Wall clock time and date at job start Mon Mar 30 2020 02:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46742 * 2 1 4 4 C 1.53001 * 109.46952 * 119.99886 * 2 1 3 5 5 H 1.08997 * 109.46778 * 180.17291 * 4 2 1 6 6 C 1.53008 * 109.47196 * 300.17113 * 4 2 1 7 7 N 1.46901 * 109.47092 * 60.16777 * 4 2 1 8 8 C 1.46849 * 110.99222 * 59.91743 * 7 4 2 9 9 C 1.53039 * 109.52071 * 185.79554 * 8 7 4 10 10 C 1.53112 * 109.31455 * 300.88520 * 9 8 7 11 11 C 1.53126 * 109.16200 * 57.63208 * 10 9 8 12 12 H 1.08993 * 109.50089 * 62.28579 * 11 10 9 13 13 C 1.50697 * 109.50167 * 182.36883 * 11 10 9 14 14 H 1.08002 * 120.00147 * 119.99945 * 13 11 10 15 15 C 1.37882 * 120.00215 * 299.99537 * 13 11 10 16 16 N 1.31516 * 119.99699 * 0.02562 * 15 13 11 17 17 Si 1.86797 * 120.00242 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47046 * 90.00322 * 17 15 13 19 19 H 1.48499 * 109.47176 * 210.00375 * 17 15 13 20 20 H 1.48502 * 109.46818 * 330.00175 * 17 15 13 21 21 C 1.46850 * 110.99739 * 184.16609 * 7 4 2 22 22 H 1.09000 * 109.46978 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47268 * 300.00147 * 1 2 3 24 24 H 1.09000 * 109.46982 * 60.00240 * 1 2 3 25 25 H 1.08993 * 109.47259 * 239.99783 * 2 1 3 26 26 H 1.09002 * 109.46618 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47186 * 299.99635 * 3 2 1 28 28 H 1.09003 * 109.47359 * 59.99908 * 3 2 1 29 29 H 1.08996 * 109.46809 * 180.02562 * 6 4 2 30 30 H 1.09005 * 109.46893 * 300.00114 * 6 4 2 31 31 H 1.08998 * 109.47171 * 59.99829 * 6 4 2 32 32 H 1.09000 * 109.42687 * 65.80516 * 8 7 4 33 33 H 1.08994 * 109.49793 * 305.83787 * 8 7 4 34 34 H 1.08999 * 109.50139 * 180.92117 * 9 8 7 35 35 H 1.09000 * 109.49991 * 60.84472 * 9 8 7 36 36 H 1.08996 * 109.52457 * 177.54003 * 10 9 8 37 37 H 1.09010 * 109.52177 * 297.72911 * 10 9 8 38 38 H 0.96991 * 119.99845 * 179.97438 * 16 15 13 39 39 H 1.09002 * 109.46072 * 54.14947 * 21 7 4 40 40 H 1.08997 * 109.46230 * 294.17741 * 21 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1300 -0.7185 1.2508 6 6 1.5264 -0.0024 2.4986 7 7 1.5536 -2.1074 1.2473 8 6 2.0263 -2.8290 0.0589 9 6 1.3858 -4.2183 0.0158 10 6 1.7587 -4.9875 1.2860 11 6 1.2974 -4.1909 2.5097 12 1 0.2124 -4.0891 2.4898 13 6 1.7121 -4.9130 3.7657 14 1 2.3674 -4.4296 4.4752 15 6 1.2550 -6.1909 4.0092 16 7 0.4575 -6.7797 3.1450 17 14 1.7685 -7.0857 5.5663 18 1 0.7923 -6.7977 6.6476 19 1 1.8043 -8.5477 5.3082 20 1 3.1174 -6.6232 5.9810 21 6 1.9414 -2.8029 2.4811 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 3.1300 1.4425 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.8901 -0.5160 3.3885 30 1 1.8873 1.0262 2.5000 31 1 0.4365 -0.0050 2.4970 32 1 3.1107 -2.9304 0.1038 33 1 1.7505 -2.2739 -0.8376 34 1 1.7494 -4.7597 -0.8575 35 1 0.3021 -4.1175 -0.0437 36 1 1.2687 -5.9611 1.2793 37 1 2.8396 -5.1229 1.3258 38 1 0.1362 -7.6787 3.3160 39 1 1.6038 -2.2280 3.3435 40 1 3.0260 -2.9050 2.5149 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306565436.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:57 Heat of formation + Delta-G solvation = -19.531091 kcal Electronic energy + Delta-G solvation = -16730.369716 eV Core-core repulsion = 14351.098151 eV Total energy + Delta-G solvation = -2379.271565 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.96550 -35.96394 -32.99687 -31.52212 -29.86367 -28.40955 -26.93589 -25.02726 -24.06726 -21.90168 -21.11729 -18.67284 -18.41116 -16.40297 -15.63829 -15.05907 -14.58101 -14.22993 -13.45434 -13.18910 -13.07515 -12.78165 -12.57213 -12.34964 -12.10980 -11.86276 -11.60213 -11.36371 -10.98588 -10.91073 -10.74954 -10.70717 -10.60334 -10.25518 -10.23325 -9.85608 -9.76589 -9.35953 -8.91821 -8.62338 -8.25665 -7.52414 -5.93525 -3.99446 3.32961 3.39557 3.42595 4.41080 4.57954 4.99848 5.07443 5.36018 5.37405 5.60134 5.67143 5.69911 5.77449 5.85269 5.89772 5.99344 6.09655 6.11412 6.13418 6.19840 6.32519 6.42377 6.43065 6.49705 6.60461 6.64283 6.73391 6.80111 6.83984 7.07317 7.28786 7.48041 7.77415 7.81446 7.94673 8.14886 8.23276 8.53895 9.04896 9.64576 11.12408 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.043617 B = 0.006972 C = 0.006418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.797114 B = 4015.309408 C = 4361.596386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.090 4.090 3 C -0.147 4.147 4 C 0.085 3.915 5 H 0.028 0.972 6 C -0.150 4.150 7 N -0.530 5.530 8 C 0.061 3.939 9 C -0.116 4.116 10 C -0.110 4.110 11 C 0.055 3.945 12 H 0.033 0.967 13 C -0.513 4.513 14 H 0.052 0.948 15 C 0.063 3.937 16 N -0.889 5.889 17 Si 0.889 3.111 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.276 1.276 21 C 0.065 3.935 22 H 0.070 0.930 23 H 0.053 0.947 24 H 0.039 0.961 25 H 0.066 0.934 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.019 0.981 33 H 0.060 0.940 34 H 0.044 0.956 35 H 0.059 0.941 36 H 0.090 0.910 37 H 0.028 0.972 38 H 0.259 0.741 39 H 0.064 0.936 40 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.948 11.672 -6.016 13.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.109 4.109 3 C -0.205 4.205 4 C -0.024 4.024 5 H 0.046 0.954 6 C -0.207 4.207 7 N -0.255 5.255 8 C -0.067 4.067 9 C -0.154 4.154 10 C -0.149 4.149 11 C 0.036 3.964 12 H 0.051 0.949 13 C -0.552 4.552 14 H 0.070 0.930 15 C -0.138 4.138 16 N -0.528 5.528 17 Si 0.717 3.283 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.201 1.201 21 C -0.062 4.062 22 H 0.089 0.911 23 H 0.072 0.928 24 H 0.058 0.942 25 H 0.085 0.915 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.037 0.963 33 H 0.079 0.921 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.108 0.892 37 H 0.047 0.953 38 H 0.069 0.931 39 H 0.082 0.918 40 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 1.346 11.512 -6.055 13.076 hybrid contribution 1.270 -0.609 0.856 1.648 sum 2.616 10.902 -5.199 12.359 Atomic orbital electron populations 1.21747 0.94587 1.02908 1.00247 1.21158 0.96923 0.95065 0.97757 1.21897 1.00506 0.96525 1.01546 1.21563 0.95950 0.89815 0.95064 0.95390 1.22003 1.02314 0.98993 0.97361 1.62019 1.59805 1.00426 1.03270 1.22064 0.96337 0.95522 0.92817 1.21665 1.00464 0.94161 0.99141 1.21648 0.98672 1.01617 0.92915 1.18654 0.96352 0.88065 0.93287 0.94854 1.21165 1.29344 0.99667 1.05034 0.92952 1.24931 0.95028 0.97456 0.96429 1.69893 1.33652 1.14130 1.35102 0.86644 0.78927 0.78898 0.83800 1.20725 1.21303 1.20062 1.22365 0.96788 0.97315 0.89735 0.91104 0.92839 0.94189 0.91547 0.93235 0.93038 0.92389 0.92303 0.92861 0.91542 0.96299 0.92129 0.93759 0.92181 0.89202 0.95324 0.93118 0.91800 0.96717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.68 37.16 0.32 -1.49 16 2 C -0.09 -1.19 2.39 -90.62 -0.22 -1.40 16 3 C -0.15 -1.60 8.84 37.16 0.33 -1.27 16 4 C 0.08 1.31 1.90 -67.71 -0.13 1.18 16 5 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 6 C -0.15 -2.15 8.13 37.16 0.30 -1.85 16 7 N -0.53 -9.85 3.77 -226.68 -0.85 -10.70 16 8 C 0.06 1.09 5.22 -3.83 -0.02 1.07 16 9 C -0.12 -2.33 6.09 -26.65 -0.16 -2.49 16 10 C -0.11 -2.67 5.03 -26.61 -0.13 -2.80 16 11 C 0.06 1.40 2.26 -91.69 -0.21 1.19 16 12 H 0.03 0.94 8.14 -51.93 -0.42 0.51 16 13 C -0.51 -14.25 8.57 -34.44 -0.29 -14.54 16 14 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 15 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 16 N -0.89 -25.63 11.35 55.43 0.63 -25.00 16 17 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 C 0.06 1.40 4.36 -3.83 -0.02 1.38 16 22 H 0.07 1.08 7.61 -51.93 -0.40 0.69 16 23 H 0.05 0.69 6.43 -51.93 -0.33 0.35 16 24 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.07 0.89 6.27 -51.93 -0.33 0.57 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.61 6.43 -51.93 -0.33 0.27 16 29 H 0.06 0.91 6.22 -51.93 -0.32 0.59 16 30 H 0.05 0.64 6.43 -51.93 -0.33 0.31 16 31 H 0.07 0.98 6.43 -51.93 -0.33 0.64 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.97 6.00 -51.93 -0.31 0.65 16 34 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.09 2.42 6.15 -51.93 -0.32 2.10 16 37 H 0.03 0.69 8.14 -51.92 -0.42 0.27 16 38 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 39 H 0.06 1.36 5.90 -51.93 -0.31 1.06 16 40 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 LS Contribution 294.09 15.07 4.43 4.43 Total: -1.00 -27.87 294.09 -8.22 -36.09 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -7.09 Total: -1.90 kcal Atomic # 6 Polarization: -19.03 SS G_CDS: -0.32 Total: -19.36 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: -0.22 Total: -35.70 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -27.87 -8.22 -36.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306565436.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.555 kcal (2) G-P(sol) polarization free energy of solvation -27.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds