Wall clock time and date at job start Mon Mar 30 2020 02:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46742 * 2 1 4 4 C 1.53001 * 109.46952 * 119.99886 * 2 1 3 5 5 H 1.08997 * 109.46778 * 180.17291 * 4 2 1 6 6 C 1.53008 * 109.47196 * 300.17113 * 4 2 1 7 7 N 1.46901 * 109.47092 * 60.16777 * 4 2 1 8 8 C 1.46849 * 110.99222 * 59.91743 * 7 4 2 9 9 C 1.53039 * 109.52071 * 185.79554 * 8 7 4 10 10 C 1.53112 * 109.31455 * 300.88520 * 9 8 7 11 11 C 1.53126 * 109.16200 * 57.63208 * 10 9 8 12 12 H 1.08993 * 109.50089 * 62.28579 * 11 10 9 13 13 C 1.50697 * 109.50167 * 182.36883 * 11 10 9 14 14 H 1.08002 * 120.00147 * 119.99945 * 13 11 10 15 15 C 1.37882 * 120.00215 * 299.99537 * 13 11 10 16 16 N 1.31516 * 119.99699 * 0.02562 * 15 13 11 17 17 Si 1.86797 * 120.00242 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47046 * 90.00322 * 17 15 13 19 19 H 1.48499 * 109.47176 * 210.00375 * 17 15 13 20 20 H 1.48502 * 109.46818 * 330.00175 * 17 15 13 21 21 C 1.46850 * 110.99739 * 184.16609 * 7 4 2 22 22 H 1.09000 * 109.46978 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47268 * 300.00147 * 1 2 3 24 24 H 1.09000 * 109.46982 * 60.00240 * 1 2 3 25 25 H 1.08993 * 109.47259 * 239.99783 * 2 1 3 26 26 H 1.09002 * 109.46618 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47186 * 299.99635 * 3 2 1 28 28 H 1.09003 * 109.47359 * 59.99908 * 3 2 1 29 29 H 1.08996 * 109.46809 * 180.02562 * 6 4 2 30 30 H 1.09005 * 109.46893 * 300.00114 * 6 4 2 31 31 H 1.08998 * 109.47171 * 59.99829 * 6 4 2 32 32 H 1.09000 * 109.42687 * 65.80516 * 8 7 4 33 33 H 1.08994 * 109.49793 * 305.83787 * 8 7 4 34 34 H 1.08999 * 109.50139 * 180.92117 * 9 8 7 35 35 H 1.09000 * 109.49991 * 60.84472 * 9 8 7 36 36 H 1.08996 * 109.52457 * 177.54003 * 10 9 8 37 37 H 1.09010 * 109.52177 * 297.72911 * 10 9 8 38 38 H 0.96991 * 119.99845 * 179.97438 * 16 15 13 39 39 H 1.09002 * 109.46072 * 54.14947 * 21 7 4 40 40 H 1.08997 * 109.46230 * 294.17741 * 21 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 3.1300 -0.7185 1.2508 6 6 1.5264 -0.0024 2.4986 7 7 1.5536 -2.1074 1.2473 8 6 2.0263 -2.8290 0.0589 9 6 1.3858 -4.2183 0.0158 10 6 1.7587 -4.9875 1.2860 11 6 1.2974 -4.1909 2.5097 12 1 0.2124 -4.0891 2.4898 13 6 1.7121 -4.9130 3.7657 14 1 2.3674 -4.4296 4.4752 15 6 1.2550 -6.1909 4.0092 16 7 0.4575 -6.7797 3.1450 17 14 1.7685 -7.0857 5.5663 18 1 0.7923 -6.7977 6.6476 19 1 1.8043 -8.5477 5.3082 20 1 3.1174 -6.6232 5.9810 21 6 1.9414 -2.8029 2.4811 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8899 26 1 3.1300 1.4425 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.8901 -0.5160 3.3885 30 1 1.8873 1.0262 2.5000 31 1 0.4365 -0.0050 2.4970 32 1 3.1107 -2.9304 0.1038 33 1 1.7505 -2.2739 -0.8376 34 1 1.7494 -4.7597 -0.8575 35 1 0.3021 -4.1175 -0.0437 36 1 1.2687 -5.9611 1.2793 37 1 2.8396 -5.1229 1.3258 38 1 0.1362 -7.6787 3.3160 39 1 1.6038 -2.2280 3.3435 40 1 3.0260 -2.9050 2.5149 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306565436.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:56 Heat of formation + Delta-G solvation = -34.799245 kcal Electronic energy + Delta-G solvation = -16731.031793 eV Core-core repulsion = 14351.098151 eV Total energy + Delta-G solvation = -2379.933642 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.41975 -37.44686 -34.87535 -33.03940 -31.73470 -29.74990 -27.88149 -26.97759 -25.55901 -23.44323 -22.77674 -20.42924 -19.68926 -18.36761 -17.19074 -16.46867 -16.28414 -15.71557 -14.91859 -14.80656 -14.48890 -14.35657 -14.05738 -13.82193 -13.61649 -13.10584 -12.87687 -12.77460 -12.72470 -12.56796 -12.42309 -12.11729 -11.82733 -11.76095 -11.74136 -11.55917 -11.21849 -11.14788 -10.74253 -10.58548 -10.34898 -9.03889 -8.07648 -6.21910 1.40860 1.41001 1.51407 2.42705 3.10736 3.19032 3.87994 4.00232 4.20011 4.30070 4.31440 4.47381 4.55978 4.58604 4.62702 4.67709 4.76908 4.90726 4.92334 4.94240 4.96516 5.09006 5.12282 5.14528 5.20760 5.24978 5.34455 5.36519 5.40916 5.53460 5.59794 5.63874 5.68113 5.99405 6.15512 6.24727 6.47105 6.49717 6.91149 7.45873 8.96982 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.043617 B = 0.006972 C = 0.006418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.797114 B = 4015.309408 C = 4361.596386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.086 4.086 3 C -0.142 4.142 4 C 0.082 3.918 5 H 0.027 0.973 6 C -0.146 4.146 7 N -0.537 5.537 8 C 0.065 3.935 9 C -0.109 4.109 10 C -0.104 4.104 11 C 0.053 3.947 12 H -0.004 1.004 13 C -0.536 4.536 14 H 0.049 0.951 15 C 0.014 3.986 16 N -0.916 5.916 17 Si 0.954 3.046 18 H -0.275 1.275 19 H -0.283 1.283 20 H -0.269 1.269 21 C 0.080 3.920 22 H 0.044 0.956 23 H 0.054 0.946 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.054 0.946 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.042 0.958 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.018 0.982 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.050 0.950 36 H 0.057 0.943 37 H 0.019 0.981 38 H 0.260 0.740 39 H 0.062 0.938 40 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.634 13.275 -6.578 15.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.105 4.105 3 C -0.200 4.200 4 C -0.026 4.026 5 H 0.045 0.955 6 C -0.203 4.203 7 N -0.261 5.261 8 C -0.063 4.063 9 C -0.147 4.147 10 C -0.142 4.142 11 C 0.035 3.965 12 H 0.014 0.986 13 C -0.575 4.575 14 H 0.067 0.933 15 C -0.185 4.185 16 N -0.555 5.555 17 Si 0.780 3.220 18 H -0.201 1.201 19 H -0.208 1.208 20 H -0.194 1.194 21 C -0.047 4.047 22 H 0.064 0.936 23 H 0.073 0.927 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.061 0.939 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.037 0.963 33 H 0.108 0.892 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.038 0.962 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges 2.035 13.133 -6.623 14.848 hybrid contribution 1.028 -1.095 1.015 1.812 sum 3.063 12.037 -5.608 13.628 Atomic orbital electron populations 1.21707 0.94658 1.01536 1.01284 1.21142 0.96757 0.96384 0.96168 1.21853 1.00822 0.94687 1.02603 1.21727 0.95929 0.87976 0.97012 0.95548 1.21983 1.01962 1.00272 0.96120 1.61982 1.60210 1.01885 1.02062 1.22053 0.96010 0.94521 0.93695 1.21574 1.00140 0.95319 0.97692 1.21463 0.97447 1.00536 0.94772 1.18576 0.94228 0.90480 0.93250 0.98556 1.21529 1.29534 1.00363 1.06075 0.93257 1.25721 0.94994 0.98236 0.99516 1.70037 1.34406 1.14371 1.36707 0.85620 0.78769 0.77641 0.80000 1.20065 1.20809 1.19410 1.22016 0.95568 0.95553 0.91583 0.93641 0.92732 0.92277 0.91485 0.92738 0.91491 0.91883 0.93934 0.90103 0.92035 0.96328 0.89171 0.91456 0.93080 0.92414 0.96244 0.93071 0.91920 0.97636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.24 8.68 71.98 0.62 -2.61 16 2 C -0.09 -2.01 2.39 -10.79 -0.03 -2.03 16 3 C -0.14 -2.56 8.84 71.98 0.64 -1.92 16 4 C 0.08 2.38 1.90 44.92 0.09 2.46 16 5 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 6 C -0.15 -3.98 8.13 71.98 0.59 -3.39 16 7 N -0.54 -19.60 3.77 -871.09 -3.28 -22.88 16 8 C 0.06 2.25 5.22 86.33 0.45 2.70 16 9 C -0.11 -4.34 6.09 30.64 0.19 -4.15 16 10 C -0.10 -5.16 5.03 30.67 0.15 -5.00 16 11 C 0.05 2.81 2.26 -11.49 -0.03 2.78 16 12 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 13 C -0.54 -30.58 8.57 25.60 0.22 -30.36 16 14 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 15 C 0.01 0.79 5.30 84.66 0.45 1.24 16 16 N -0.92 -54.24 11.35 21.45 0.24 -53.99 16 17 Si 0.95 44.51 29.54 68.60 2.03 46.54 16 18 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 19 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 20 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 21 C 0.08 3.53 4.36 86.33 0.38 3.90 16 22 H 0.04 1.32 7.61 -2.39 -0.02 1.30 16 23 H 0.05 1.29 6.43 -2.39 -0.02 1.27 16 24 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.07 1.57 6.27 -2.39 -0.01 1.56 16 26 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.06 1.08 6.43 -2.39 -0.02 1.06 16 29 H 0.04 1.28 6.22 -2.39 -0.01 1.27 16 30 H 0.08 1.74 6.43 -2.38 -0.02 1.72 16 31 H 0.06 1.73 6.43 -2.39 -0.02 1.71 16 32 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.09 2.63 6.00 -2.39 -0.01 2.62 16 34 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.06 3.22 6.15 -2.39 -0.01 3.21 16 37 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 38 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 39 H 0.06 2.73 5.90 -2.39 -0.01 2.71 16 40 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 Total: -1.00 -61.01 294.09 3.69 -57.33 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: 0.98 Total: 9.40 kcal Atomic # 6 Polarization: -40.10 SS G_CDS: 3.72 Total: -36.39 kcal Atomic # 7 Polarization: -73.84 SS G_CDS: -3.04 Total: -76.88 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -61.01 3.69 -57.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306565436.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.529 kcal (2) G-P(sol) polarization free energy of solvation -61.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds