Wall clock time and date at job start Mon Mar 30 2020 02:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47050 * 2 1 4 4 C 1.53008 * 109.47007 * 119.99655 * 2 1 3 5 5 H 1.08995 * 109.47303 * 294.93969 * 4 2 1 6 6 C 1.53004 * 109.46897 * 174.93753 * 4 2 1 7 7 N 1.46900 * 109.46928 * 54.94206 * 4 2 1 8 8 C 1.46842 * 111.00285 * 60.57685 * 7 4 2 9 9 C 1.53035 * 109.52475 * 185.83968 * 8 7 4 10 10 C 1.53117 * 109.27573 * 300.81864 * 9 8 7 11 11 C 1.53117 * 109.16172 * 57.65702 * 10 9 8 12 12 H 1.09005 * 109.50721 * 62.28414 * 11 10 9 13 13 C 1.50700 * 109.50516 * 182.36258 * 11 10 9 14 14 H 1.08002 * 119.99780 * 119.92225 * 13 11 10 15 15 C 1.37876 * 119.99861 * 299.91863 * 13 11 10 16 16 N 1.31516 * 120.00344 * 0.02562 * 15 13 11 17 17 Si 1.86802 * 119.99741 * 179.97438 * 15 13 11 18 18 H 1.48493 * 109.47247 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47046 * 120.00299 * 17 15 13 20 20 H 1.48505 * 109.47124 * 239.99995 * 17 15 13 21 21 C 1.46924 * 110.98588 * 184.80572 * 7 4 2 22 22 H 1.08998 * 109.47112 * 64.56252 * 1 2 3 23 23 H 1.09002 * 109.47028 * 184.55766 * 1 2 3 24 24 H 1.09001 * 109.47354 * 304.55467 * 1 2 3 25 25 H 1.08996 * 109.47804 * 239.99575 * 2 1 3 26 26 H 1.09003 * 109.47156 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.46904 * 299.99749 * 3 2 1 28 28 H 1.08996 * 109.47067 * 59.99965 * 3 2 1 29 29 H 1.09003 * 109.46847 * 60.00727 * 6 4 2 30 30 H 1.08997 * 109.46951 * 179.97438 * 6 4 2 31 31 H 1.08995 * 109.47320 * 300.00205 * 6 4 2 32 32 H 1.09003 * 109.46147 * 65.82325 * 8 7 4 33 33 H 1.09002 * 109.45398 * 305.85253 * 8 7 4 34 34 H 1.09003 * 109.50528 * 180.88191 * 9 8 7 35 35 H 1.08995 * 109.53354 * 60.78188 * 9 8 7 36 36 H 1.09001 * 109.52670 * 297.74590 * 10 9 8 37 37 H 1.09003 * 109.52113 * 177.55902 * 10 9 8 38 38 H 0.96995 * 120.00516 * 179.97438 * 16 15 13 39 39 H 1.09005 * 109.52016 * 54.15828 * 21 7 4 40 40 H 1.09003 * 109.45356 * 294.16339 * 21 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 1 1.7526 -0.1577 2.1370 6 6 3.5647 -0.8324 1.1873 7 7 1.4531 -2.0664 1.3120 8 6 1.8312 -2.8609 0.1363 9 6 1.0881 -4.1985 0.1624 10 6 1.4467 -4.9509 1.4468 11 6 1.0875 -4.0820 2.6552 12 1 0.0128 -3.9001 2.6662 13 6 1.4905 -4.7911 3.9224 14 1 2.2044 -4.3353 4.5926 15 6 0.9479 -6.0216 4.2263 16 7 0.0790 -6.5769 3.4100 17 14 1.4481 -6.9009 5.7967 18 1 2.4328 -6.0712 6.5364 19 1 0.2491 -7.1193 6.6451 20 1 2.0596 -8.2109 5.4573 21 6 1.8305 -2.7477 2.5578 22 1 -0.3633 0.4414 -0.9280 23 1 -0.3633 -1.0244 0.0817 24 1 -0.3634 0.5829 0.8464 25 1 1.8934 -0.5139 -0.8899 26 1 3.1300 1.4426 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8899 29 1 4.0002 0.1658 1.1409 30 1 3.9281 -1.3457 2.0775 31 1 3.8521 -1.3959 0.2997 32 1 2.9059 -3.0421 0.1508 33 1 1.5669 -2.3162 -0.7701 34 1 1.3808 -4.7943 -0.7022 35 1 0.0135 -4.0190 0.1336 36 1 2.5153 -5.1654 1.4571 37 1 0.8864 -5.8849 1.4903 38 1 -0.3025 -7.4427 3.6236 39 1 1.5657 -2.1216 3.4100 40 1 2.9053 -2.9294 2.5610 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306565438.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:00 Heat of formation + Delta-G solvation = -22.353361 kcal Electronic energy + Delta-G solvation = -16747.730086 eV Core-core repulsion = 14368.336138 eV Total energy + Delta-G solvation = -2379.393948 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.07349 -35.80879 -33.01118 -31.52216 -29.78157 -28.78895 -26.64560 -24.91825 -23.97671 -21.71345 -21.53870 -19.12490 -18.16861 -16.43174 -15.40878 -14.71984 -14.31505 -14.16877 -13.94577 -13.63010 -13.04211 -12.71498 -12.42972 -12.10584 -12.00963 -11.93015 -11.63780 -11.58651 -11.11343 -10.91918 -10.73502 -10.69408 -10.60235 -10.43940 -10.04560 -9.95647 -9.75601 -9.40533 -8.92152 -8.63945 -8.26219 -7.48795 -5.93798 -3.99686 3.31802 3.39828 3.43565 4.42305 4.61040 4.93274 5.15658 5.35927 5.38600 5.50591 5.64064 5.67009 5.75034 5.86656 5.93684 5.98937 6.04038 6.07181 6.14287 6.19231 6.27020 6.35505 6.44464 6.52560 6.59972 6.62667 6.74513 6.81133 6.84475 7.05311 7.28732 7.47797 7.77154 7.81225 7.94554 8.14683 8.23034 8.53575 9.04921 9.64471 11.12167 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.043878 B = 0.006874 C = 0.006515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.977640 B = 4072.163186 C = 4296.699981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.088 4.088 3 C -0.146 4.146 4 C 0.084 3.916 5 H 0.075 0.925 6 C -0.187 4.187 7 N -0.528 5.528 8 C 0.059 3.941 9 C -0.117 4.117 10 C -0.110 4.110 11 C 0.054 3.946 12 H 0.033 0.967 13 C -0.512 4.512 14 H 0.053 0.947 15 C 0.062 3.938 16 N -0.889 5.889 17 Si 0.889 3.111 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.285 1.285 21 C 0.067 3.933 22 H 0.039 0.961 23 H 0.074 0.926 24 H 0.048 0.952 25 H 0.066 0.934 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.024 0.976 33 H 0.059 0.941 34 H 0.043 0.957 35 H 0.059 0.941 36 H 0.028 0.972 37 H 0.089 0.911 38 H 0.258 0.742 39 H 0.056 0.944 40 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.359 10.875 -7.025 13.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.107 4.107 3 C -0.204 4.204 4 C -0.025 4.025 5 H 0.094 0.906 6 C -0.246 4.246 7 N -0.252 5.252 8 C -0.069 4.069 9 C -0.155 4.155 10 C -0.148 4.148 11 C 0.036 3.964 12 H 0.051 0.949 13 C -0.551 4.551 14 H 0.071 0.929 15 C -0.139 4.139 16 N -0.528 5.528 17 Si 0.717 3.283 18 H -0.199 1.199 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.060 4.060 22 H 0.058 0.942 23 H 0.093 0.907 24 H 0.067 0.933 25 H 0.084 0.916 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.042 0.958 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.047 0.953 37 H 0.108 0.892 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 2.733 10.757 -7.033 13.140 hybrid contribution 1.247 -0.643 0.873 1.653 sum 3.980 10.113 -6.160 12.493 Atomic orbital electron populations 1.21713 0.94581 1.03272 0.99973 1.21155 0.96682 0.95053 0.97823 1.21882 1.00735 0.96413 1.01388 1.21720 0.91382 0.91520 0.97916 0.90647 1.22508 0.98447 1.01471 1.02139 1.62238 1.58368 1.01346 1.03200 1.22073 0.97056 0.94864 0.92921 1.21677 1.00116 0.94608 0.99135 1.21637 0.99052 1.01398 0.92690 1.18664 0.96033 0.88471 0.93273 0.94867 1.21204 1.25031 1.03307 1.05588 0.92892 1.24932 0.94989 0.97364 0.96580 1.69903 1.29580 1.17049 1.36251 0.86593 0.78357 0.79603 0.83762 1.19900 1.21064 1.21131 1.22305 0.97349 0.97284 0.89026 0.94161 0.90711 0.93296 0.91611 0.92872 0.93050 0.92827 0.92704 0.92366 0.92687 0.95809 0.92248 0.93804 0.92230 0.95325 0.89245 0.93172 0.92581 0.96151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.06 37.16 0.34 -1.50 16 2 C -0.09 -1.14 1.99 -90.61 -0.18 -1.32 16 3 C -0.15 -1.58 8.95 37.16 0.33 -1.24 16 4 C 0.08 1.27 1.93 -67.71 -0.13 1.14 16 5 H 0.08 1.17 8.08 -51.93 -0.42 0.75 16 6 C -0.19 -2.65 8.26 37.16 0.31 -2.34 16 7 N -0.53 -9.67 3.59 -226.62 -0.81 -10.48 16 8 C 0.06 1.04 4.55 -3.84 -0.02 1.02 16 9 C -0.12 -2.33 6.09 -26.65 -0.16 -2.49 16 10 C -0.11 -2.63 5.03 -26.61 -0.13 -2.76 16 11 C 0.05 1.37 2.26 -91.69 -0.21 1.17 16 12 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 13 C -0.51 -14.20 8.56 -34.44 -0.29 -14.49 16 14 H 0.05 1.45 7.74 -52.49 -0.41 1.05 16 15 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 16 N -0.89 -25.61 11.35 55.43 0.63 -24.99 16 17 Si 0.89 21.45 29.54 -169.99 -5.02 16.42 16 18 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 C 0.07 1.44 4.25 -3.79 -0.02 1.43 16 22 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.07 1.16 7.24 -51.93 -0.38 0.78 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 0.87 6.57 -51.93 -0.34 0.53 16 26 H 0.05 0.54 6.57 -51.93 -0.34 0.20 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.66 6.57 -51.93 -0.34 0.32 16 30 H 0.06 0.90 6.65 -51.93 -0.35 0.55 16 31 H 0.05 0.78 6.53 -51.93 -0.34 0.44 16 32 H 0.02 0.43 6.62 -51.93 -0.34 0.08 16 33 H 0.06 0.94 6.13 -51.93 -0.32 0.62 16 34 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.09 2.40 6.15 -51.93 -0.32 2.08 16 38 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.06 1.20 8.08 -51.93 -0.42 0.79 16 40 H 0.02 0.44 6.72 -51.93 -0.35 0.09 16 LS Contribution 295.14 15.07 4.45 4.45 Total: -1.00 -27.70 295.14 -8.20 -35.90 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: -7.18 Total: -1.54 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: -0.26 Total: -19.77 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: -0.19 Total: -35.47 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.70 -8.20 -35.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306565438.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.546 kcal (2) G-P(sol) polarization free energy of solvation -27.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds