Wall clock time and date at job start Mon Mar 30 2020 02:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47050 * 2 1 4 4 C 1.53008 * 109.47007 * 119.99655 * 2 1 3 5 5 H 1.08995 * 109.47303 * 294.93969 * 4 2 1 6 6 C 1.53004 * 109.46897 * 174.93753 * 4 2 1 7 7 N 1.46900 * 109.46928 * 54.94206 * 4 2 1 8 8 C 1.46842 * 111.00285 * 60.57685 * 7 4 2 9 9 C 1.53035 * 109.52475 * 185.83968 * 8 7 4 10 10 C 1.53117 * 109.27573 * 300.81864 * 9 8 7 11 11 C 1.53117 * 109.16172 * 57.65702 * 10 9 8 12 12 H 1.09005 * 109.50721 * 62.28414 * 11 10 9 13 13 C 1.50700 * 109.50516 * 182.36258 * 11 10 9 14 14 H 1.08002 * 119.99780 * 119.92225 * 13 11 10 15 15 C 1.37876 * 119.99861 * 299.91863 * 13 11 10 16 16 N 1.31516 * 120.00344 * 0.02562 * 15 13 11 17 17 Si 1.86802 * 119.99741 * 179.97438 * 15 13 11 18 18 H 1.48493 * 109.47247 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47046 * 120.00299 * 17 15 13 20 20 H 1.48505 * 109.47124 * 239.99995 * 17 15 13 21 21 C 1.46924 * 110.98588 * 184.80572 * 7 4 2 22 22 H 1.08998 * 109.47112 * 64.56252 * 1 2 3 23 23 H 1.09002 * 109.47028 * 184.55766 * 1 2 3 24 24 H 1.09001 * 109.47354 * 304.55467 * 1 2 3 25 25 H 1.08996 * 109.47804 * 239.99575 * 2 1 3 26 26 H 1.09003 * 109.47156 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.46904 * 299.99749 * 3 2 1 28 28 H 1.08996 * 109.47067 * 59.99965 * 3 2 1 29 29 H 1.09003 * 109.46847 * 60.00727 * 6 4 2 30 30 H 1.08997 * 109.46951 * 179.97438 * 6 4 2 31 31 H 1.08995 * 109.47320 * 300.00205 * 6 4 2 32 32 H 1.09003 * 109.46147 * 65.82325 * 8 7 4 33 33 H 1.09002 * 109.45398 * 305.85253 * 8 7 4 34 34 H 1.09003 * 109.50528 * 180.88191 * 9 8 7 35 35 H 1.08995 * 109.53354 * 60.78188 * 9 8 7 36 36 H 1.09001 * 109.52670 * 297.74590 * 10 9 8 37 37 H 1.09003 * 109.52113 * 177.55902 * 10 9 8 38 38 H 0.96995 * 120.00516 * 179.97438 * 16 15 13 39 39 H 1.09005 * 109.52016 * 54.15828 * 21 7 4 40 40 H 1.09003 * 109.45356 * 294.16339 * 21 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 1 1.7526 -0.1577 2.1370 6 6 3.5647 -0.8324 1.1873 7 7 1.4531 -2.0664 1.3120 8 6 1.8312 -2.8609 0.1363 9 6 1.0881 -4.1985 0.1624 10 6 1.4467 -4.9509 1.4468 11 6 1.0875 -4.0820 2.6552 12 1 0.0128 -3.9001 2.6662 13 6 1.4905 -4.7911 3.9224 14 1 2.2044 -4.3353 4.5926 15 6 0.9479 -6.0216 4.2263 16 7 0.0790 -6.5769 3.4100 17 14 1.4481 -6.9009 5.7967 18 1 2.4328 -6.0712 6.5364 19 1 0.2491 -7.1193 6.6451 20 1 2.0596 -8.2109 5.4573 21 6 1.8305 -2.7477 2.5578 22 1 -0.3633 0.4414 -0.9280 23 1 -0.3633 -1.0244 0.0817 24 1 -0.3634 0.5829 0.8464 25 1 1.8934 -0.5139 -0.8899 26 1 3.1300 1.4426 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8899 29 1 4.0002 0.1658 1.1409 30 1 3.9281 -1.3457 2.0775 31 1 3.8521 -1.3959 0.2997 32 1 2.9059 -3.0421 0.1508 33 1 1.5669 -2.3162 -0.7701 34 1 1.3808 -4.7943 -0.7022 35 1 0.0135 -4.0190 0.1336 36 1 2.5153 -5.1654 1.4571 37 1 0.8864 -5.8849 1.4903 38 1 -0.3025 -7.4427 3.6236 39 1 1.5657 -2.1216 3.4100 40 1 2.9053 -2.9294 2.5610 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306565438.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:00 Heat of formation + Delta-G solvation = -37.380776 kcal Electronic energy + Delta-G solvation = -16748.381724 eV Core-core repulsion = 14368.336138 eV Total energy + Delta-G solvation = -2380.045586 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.51569 -37.30580 -34.82794 -33.06368 -31.63233 -30.07530 -27.66648 -26.90661 -25.38998 -23.34833 -23.03112 -20.63092 -19.69963 -18.41319 -17.01071 -16.44312 -15.77865 -15.52611 -15.20607 -15.00700 -14.71772 -14.49362 -13.89979 -13.61312 -13.35322 -13.14297 -12.91296 -12.83417 -12.76276 -12.66067 -12.49903 -12.25667 -11.87839 -11.68365 -11.64899 -11.44707 -11.38293 -11.21173 -10.70191 -10.63209 -10.35989 -8.96593 -8.07745 -6.21957 1.39487 1.41016 1.52478 2.42659 3.16261 3.19028 3.83136 4.10281 4.19578 4.30397 4.32261 4.47375 4.48805 4.57488 4.67295 4.68958 4.76709 4.87856 4.93035 4.94676 4.98631 5.09364 5.10270 5.14105 5.19073 5.23699 5.28210 5.41095 5.44462 5.54300 5.57244 5.64380 5.68731 6.00272 6.16086 6.25553 6.48829 6.50567 6.91521 7.45962 8.97043 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.043878 B = 0.006874 C = 0.006515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.977640 B = 4072.163186 C = 4296.699981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.083 4.083 3 C -0.141 4.141 4 C 0.081 3.919 5 H 0.070 0.930 6 C -0.181 4.181 7 N -0.536 5.536 8 C 0.065 3.935 9 C -0.111 4.111 10 C -0.102 4.102 11 C 0.052 3.948 12 H -0.005 1.005 13 C -0.535 4.535 14 H 0.049 0.951 15 C 0.014 3.986 16 N -0.916 5.916 17 Si 0.954 3.046 18 H -0.268 1.268 19 H -0.280 1.280 20 H -0.280 1.280 21 C 0.084 3.916 22 H 0.058 0.942 23 H 0.048 0.952 24 H 0.046 0.954 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.065 0.935 28 H 0.054 0.946 29 H 0.079 0.921 30 H 0.039 0.961 31 H 0.056 0.944 32 H 0.026 0.974 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.049 0.951 36 H 0.020 0.980 37 H 0.056 0.944 38 H 0.260 0.740 39 H 0.049 0.951 40 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.397 12.285 -7.845 15.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.102 4.102 3 C -0.199 4.199 4 C -0.027 4.027 5 H 0.088 0.912 6 C -0.239 4.239 7 N -0.260 5.260 8 C -0.062 4.062 9 C -0.149 4.149 10 C -0.141 4.141 11 C 0.034 3.966 12 H 0.013 0.987 13 C -0.574 4.574 14 H 0.067 0.933 15 C -0.185 4.185 16 N -0.556 5.556 17 Si 0.780 3.220 18 H -0.192 1.192 19 H -0.206 1.206 20 H -0.205 1.205 21 C -0.044 4.044 22 H 0.077 0.923 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.084 0.916 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.058 0.942 31 H 0.075 0.925 32 H 0.044 0.956 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.039 0.961 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 3.777 12.184 -7.861 14.984 hybrid contribution 0.883 -1.064 1.120 1.779 sum 4.660 11.120 -6.741 13.814 Atomic orbital electron populations 1.21678 0.94997 1.01738 1.00916 1.21131 0.96249 0.96371 0.96417 1.21838 1.01249 0.94607 1.02217 1.21840 0.92198 0.89522 0.99158 0.91199 1.22440 0.97418 1.02786 1.01288 1.62164 1.59181 1.02617 1.01993 1.22038 0.96732 0.93801 0.93657 1.21594 0.99841 0.95866 0.97603 1.21440 0.97768 1.00289 0.94557 1.18588 0.94041 0.90756 0.93251 0.98713 1.21561 1.25164 1.03950 1.06685 0.93254 1.25720 0.94950 0.98111 0.99718 1.70044 1.30360 1.17343 1.37830 0.85571 0.78142 0.78411 0.79913 1.19241 1.20579 1.20548 1.21934 0.96282 0.95475 0.90714 0.92264 0.93274 0.93529 0.91211 0.92008 0.91564 0.92735 0.90190 0.94183 0.92505 0.95557 0.89417 0.91519 0.93252 0.96116 0.92546 0.93086 0.93259 0.96536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.34 9.06 71.98 0.65 -2.69 16 2 C -0.08 -1.91 1.99 -10.79 -0.02 -1.93 16 3 C -0.14 -2.53 8.95 71.98 0.64 -1.89 16 4 C 0.08 2.31 1.93 44.92 0.09 2.40 16 5 H 0.07 2.08 8.08 -2.39 -0.02 2.06 16 6 C -0.18 -4.70 8.26 71.98 0.59 -4.10 16 7 N -0.54 -19.30 3.59 -870.89 -3.13 -22.43 16 8 C 0.07 2.21 4.55 86.33 0.39 2.60 16 9 C -0.11 -4.38 6.09 30.65 0.19 -4.19 16 10 C -0.10 -5.04 5.03 30.67 0.15 -4.89 16 11 C 0.05 2.75 2.26 -11.49 -0.03 2.72 16 12 H -0.01 -0.32 8.14 -2.38 -0.02 -0.34 16 13 C -0.53 -30.46 8.56 25.60 0.22 -30.24 16 14 H 0.05 2.77 7.74 -2.91 -0.02 2.74 16 15 C 0.01 0.77 5.30 84.65 0.45 1.22 16 16 N -0.92 -54.28 11.35 21.45 0.24 -54.04 16 17 Si 0.95 44.53 29.54 68.60 2.03 46.56 16 18 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 20 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 21 C 0.08 3.64 4.25 86.31 0.37 4.01 16 22 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.05 1.46 7.24 -2.39 -0.02 1.44 16 24 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.07 1.58 6.57 -2.39 -0.02 1.56 16 26 H 0.06 1.01 6.57 -2.39 -0.02 1.00 16 27 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.08 1.67 6.57 -2.39 -0.02 1.66 16 30 H 0.04 1.18 6.65 -2.39 -0.02 1.16 16 31 H 0.06 1.46 6.53 -2.39 -0.02 1.44 16 32 H 0.03 0.89 6.62 -2.39 -0.02 0.88 16 33 H 0.09 2.52 6.13 -2.39 -0.01 2.50 16 34 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.06 3.14 6.15 -2.39 -0.01 3.13 16 38 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 39 H 0.05 2.17 8.08 -2.38 -0.02 2.15 16 40 H 0.02 0.73 6.72 -2.39 -0.02 0.71 16 Total: -1.00 -60.80 295.14 3.82 -56.98 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: 0.98 Total: 9.90 kcal Atomic # 6 Polarization: -40.68 SS G_CDS: 3.70 Total: -36.98 kcal Atomic # 7 Polarization: -73.58 SS G_CDS: -2.89 Total: -76.47 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -60.80 3.82 -56.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306565438.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.603 kcal (2) G-P(sol) polarization free energy of solvation -60.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds