Wall clock time and date at job start Mon Mar 30 2020 02:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47216 * 2 1 4 4 C 1.53000 * 109.47342 * 119.99862 * 2 1 3 5 5 H 1.09003 * 109.46998 * 305.04178 * 4 2 1 6 6 C 1.53007 * 109.47098 * 65.03711 * 4 2 1 7 7 N 1.46894 * 109.47522 * 185.03856 * 4 2 1 8 8 C 1.46850 * 111.00128 * 299.55035 * 7 4 2 9 9 C 1.53033 * 109.51529 * 174.15441 * 8 7 4 10 10 C 1.53122 * 109.27989 * 59.18543 * 9 8 7 11 11 C 1.53118 * 109.15669 * 302.34359 * 10 9 8 12 12 H 1.08993 * 109.50648 * 297.70931 * 11 10 9 13 13 C 1.50701 * 109.49740 * 177.59349 * 11 10 9 14 14 H 1.07998 * 120.00005 * 239.99396 * 13 11 10 15 15 C 1.37875 * 119.99943 * 60.00473 * 13 11 10 16 16 N 1.31513 * 120.00201 * 359.97438 * 15 13 11 17 17 Si 1.86808 * 119.99925 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.46935 * 89.99845 * 17 15 13 19 19 H 1.48495 * 109.47077 * 209.99766 * 17 15 13 20 20 H 1.48498 * 109.46984 * 330.00020 * 17 15 13 21 21 C 1.46849 * 110.99272 * 175.34512 * 7 4 2 22 22 H 1.09000 * 109.46598 * 300.00056 * 1 2 3 23 23 H 1.08996 * 109.46553 * 59.99929 * 1 2 3 24 24 H 1.08994 * 109.47096 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47505 * 239.99896 * 2 1 3 26 26 H 1.09003 * 109.47431 * 185.15822 * 3 2 1 27 27 H 1.08998 * 109.47454 * 305.16148 * 3 2 1 28 28 H 1.08999 * 109.47173 * 65.15802 * 3 2 1 29 29 H 1.09006 * 109.46872 * 300.00133 * 6 4 2 30 30 H 1.08995 * 109.47018 * 60.00101 * 6 4 2 31 31 H 1.08995 * 109.47046 * 180.02562 * 6 4 2 32 32 H 1.09005 * 109.46189 * 54.13880 * 8 7 4 33 33 H 1.09005 * 109.45950 * 294.16743 * 8 7 4 34 34 H 1.09005 * 109.49758 * 179.12636 * 9 8 7 35 35 H 1.09002 * 109.50508 * 299.20154 * 9 8 7 36 36 H 1.09004 * 109.51935 * 62.24692 * 10 9 8 37 37 H 1.08996 * 109.51834 * 182.37395 * 10 9 8 38 38 H 0.97003 * 120.00245 * 180.02562 * 16 15 13 39 39 H 1.09001 * 109.46938 * 65.83605 * 21 7 4 40 40 H 1.08993 * 109.46660 * 305.85955 * 21 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6049 -0.2621 2.1369 6 6 1.6361 -2.1957 1.1876 7 7 3.5040 -0.6168 1.3116 8 6 4.1264 -1.2357 0.1344 9 6 5.6352 -0.9812 0.1606 10 6 6.2255 -1.5729 1.4436 11 6 5.5264 -0.9471 2.6536 12 1 5.7132 0.1266 2.6667 13 6 6.0602 -1.5670 3.9192 14 1 5.3920 -2.0882 4.5887 15 6 7.4015 -1.4686 4.2224 16 7 8.2153 -0.8342 3.4070 17 14 8.0631 -2.2365 5.7917 18 1 8.4815 -3.6352 5.5201 19 1 9.2311 -1.4547 6.2710 20 1 7.0027 -2.2300 6.8312 21 6 4.0207 -1.2026 2.5551 22 1 -0.3632 0.5139 0.8900 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 3.1262 1.4439 -0.0924 27 1 1.6032 1.9824 -0.8401 28 1 1.7541 1.9290 0.9326 29 1 0.5498 -2.2732 1.1413 30 1 2.0712 -2.6548 0.2999 31 1 1.9991 -2.7094 2.0777 32 1 3.7007 -0.8032 -0.7711 33 1 3.9389 -2.3095 0.1467 34 1 6.0990 -1.4539 -0.7052 35 1 5.8238 0.0920 0.1337 36 1 6.0713 -2.6519 1.4516 37 1 7.2930 -1.3571 1.4866 38 1 9.1591 -0.7653 3.6202 39 1 3.8337 -2.2765 2.5560 40 1 3.5184 -0.7460 3.4079 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306565439.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:02 Heat of formation + Delta-G solvation = -22.714149 kcal Electronic energy + Delta-G solvation = -16747.883156 eV Core-core repulsion = 14368.473563 eV Total energy + Delta-G solvation = -2379.409593 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.07461 -35.81147 -33.01222 -31.52522 -29.77978 -28.78510 -26.65129 -24.91642 -23.98058 -21.71309 -21.53523 -19.12593 -18.16918 -16.43093 -15.40800 -14.71936 -14.32024 -14.16287 -13.93823 -13.63407 -13.02918 -12.71167 -12.45850 -12.12617 -12.00573 -11.92225 -11.63374 -11.58254 -11.09746 -10.90187 -10.74984 -10.69693 -10.60533 -10.44861 -10.05551 -9.95753 -9.75335 -9.40144 -8.92035 -8.64609 -8.25780 -7.48707 -5.93452 -3.99452 3.32852 3.39620 3.42726 4.42418 4.61089 4.93062 5.15219 5.36066 5.38576 5.50385 5.64379 5.67006 5.75199 5.86999 5.93885 5.98835 6.03779 6.07104 6.14632 6.18479 6.26151 6.35763 6.44615 6.52619 6.60015 6.62543 6.71867 6.81129 6.84574 7.05487 7.28906 7.47997 7.77345 7.81392 7.94831 8.14932 8.23261 8.53760 9.04885 9.64622 11.12417 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.043898 B = 0.006876 C = 0.006515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.690930 B = 4071.443770 C = 4297.061778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 C -0.134 4.134 4 C 0.084 3.916 5 H 0.075 0.925 6 C -0.187 4.187 7 N -0.528 5.528 8 C 0.059 3.941 9 C -0.118 4.118 10 C -0.110 4.110 11 C 0.055 3.945 12 H 0.033 0.967 13 C -0.513 4.513 14 H 0.052 0.948 15 C 0.063 3.937 16 N -0.889 5.889 17 Si 0.889 3.111 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.275 1.275 21 C 0.067 3.933 22 H 0.053 0.947 23 H 0.050 0.950 24 H 0.052 0.948 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.039 0.961 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.024 0.976 34 H 0.043 0.957 35 H 0.059 0.941 36 H 0.028 0.972 37 H 0.089 0.911 38 H 0.259 0.741 39 H 0.020 0.980 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.388 0.494 -7.032 13.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.107 4.107 3 C -0.192 4.192 4 C -0.025 4.025 5 H 0.094 0.906 6 C -0.246 4.246 7 N -0.251 5.251 8 C -0.069 4.069 9 C -0.155 4.155 10 C -0.148 4.148 11 C 0.036 3.964 12 H 0.051 0.949 13 C -0.552 4.552 14 H 0.071 0.929 15 C -0.138 4.138 16 N -0.528 5.528 17 Si 0.717 3.283 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.060 4.060 22 H 0.072 0.928 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.058 0.942 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.042 0.958 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.047 0.953 37 H 0.108 0.892 38 H 0.069 0.931 39 H 0.038 0.962 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.065 1.052 -7.038 13.156 hybrid contribution 0.192 -1.411 0.876 1.672 sum -10.872 -0.359 -6.163 12.502 Atomic orbital electron populations 1.21879 0.95802 1.01337 1.01395 1.21159 0.94626 0.97120 0.97840 1.21667 1.02358 0.94744 1.00388 1.21733 0.89427 0.93489 0.97861 0.90649 1.22511 1.01050 0.98880 1.02142 1.62224 1.02719 1.57010 1.03181 1.22076 0.95945 0.95988 0.92902 1.21680 0.93528 1.01195 0.99134 1.21638 1.03254 0.97173 0.92700 1.18655 0.87350 0.97133 0.93245 0.94874 1.21165 0.93321 1.34996 1.05736 0.92949 1.24929 0.97059 0.95268 0.96576 1.69895 1.04083 1.42421 1.36376 0.86647 0.78557 0.79187 0.83899 1.20828 1.21263 1.20002 1.22291 0.99160 0.95449 0.89070 0.92820 0.93041 0.92863 0.91618 0.91277 0.94184 0.93073 0.92702 0.92691 0.92361 0.92257 0.95820 0.93811 0.92233 0.95337 0.89246 0.93118 0.96163 0.92602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 8.95 37.16 0.33 -1.24 16 2 C -0.09 -1.15 1.98 -90.62 -0.18 -1.33 16 3 C -0.13 -1.78 8.89 37.16 0.33 -1.45 16 4 C 0.08 1.27 1.94 -67.71 -0.13 1.14 16 5 H 0.08 1.17 8.09 -51.93 -0.42 0.75 16 6 C -0.19 -2.65 8.26 37.16 0.31 -2.34 16 7 N -0.53 -9.68 3.78 -226.69 -0.86 -10.54 16 8 C 0.06 1.04 4.53 -3.83 -0.02 1.03 16 9 C -0.12 -2.34 6.09 -26.65 -0.16 -2.50 16 10 C -0.11 -2.63 5.02 -26.61 -0.13 -2.77 16 11 C 0.05 1.39 2.26 -91.69 -0.21 1.18 16 12 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 13 C -0.51 -14.24 8.56 -34.44 -0.29 -14.53 16 14 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 15 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 16 N -0.89 -25.62 11.35 55.43 0.63 -24.99 16 17 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 21 C 0.07 1.44 4.24 -3.83 -0.02 1.43 16 22 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.54 6.56 -51.93 -0.34 0.20 16 25 H 0.07 0.87 6.56 -51.93 -0.34 0.52 16 26 H 0.07 1.05 7.55 -51.93 -0.39 0.66 16 27 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.66 6.57 -51.93 -0.34 0.32 16 30 H 0.05 0.78 6.53 -51.93 -0.34 0.44 16 31 H 0.06 0.90 6.64 -51.93 -0.34 0.56 16 32 H 0.06 0.94 6.13 -51.93 -0.32 0.62 16 33 H 0.02 0.43 6.62 -51.93 -0.34 0.08 16 34 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.09 2.40 6.15 -51.93 -0.32 2.08 16 38 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 39 H 0.02 0.44 6.72 -51.93 -0.35 0.09 16 40 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16 LS Contribution 295.41 15.07 4.45 4.45 Total: -1.00 -27.72 295.41 -8.26 -35.97 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -7.19 Total: -1.60 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: -0.27 Total: -19.72 kcal Atomic # 7 Polarization: -35.30 SS G_CDS: -0.23 Total: -35.53 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.72 -8.26 -35.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306565439.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.260 kcal (2) G-P(sol) polarization free energy of solvation -27.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds