Wall clock time and date at job start Mon Mar 30 2020 02:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47216 * 2 1 4 4 C 1.53000 * 109.47342 * 119.99862 * 2 1 3 5 5 H 1.09003 * 109.46998 * 305.04178 * 4 2 1 6 6 C 1.53007 * 109.47098 * 65.03711 * 4 2 1 7 7 N 1.46894 * 109.47522 * 185.03856 * 4 2 1 8 8 C 1.46850 * 111.00128 * 299.55035 * 7 4 2 9 9 C 1.53033 * 109.51529 * 174.15441 * 8 7 4 10 10 C 1.53122 * 109.27989 * 59.18543 * 9 8 7 11 11 C 1.53118 * 109.15669 * 302.34359 * 10 9 8 12 12 H 1.08993 * 109.50648 * 297.70931 * 11 10 9 13 13 C 1.50701 * 109.49740 * 177.59349 * 11 10 9 14 14 H 1.07998 * 120.00005 * 239.99396 * 13 11 10 15 15 C 1.37875 * 119.99943 * 60.00473 * 13 11 10 16 16 N 1.31513 * 120.00201 * 359.97438 * 15 13 11 17 17 Si 1.86808 * 119.99925 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.46935 * 89.99845 * 17 15 13 19 19 H 1.48495 * 109.47077 * 209.99766 * 17 15 13 20 20 H 1.48498 * 109.46984 * 330.00020 * 17 15 13 21 21 C 1.46849 * 110.99272 * 175.34512 * 7 4 2 22 22 H 1.09000 * 109.46598 * 300.00056 * 1 2 3 23 23 H 1.08996 * 109.46553 * 59.99929 * 1 2 3 24 24 H 1.08994 * 109.47096 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47505 * 239.99896 * 2 1 3 26 26 H 1.09003 * 109.47431 * 185.15822 * 3 2 1 27 27 H 1.08998 * 109.47454 * 305.16148 * 3 2 1 28 28 H 1.08999 * 109.47173 * 65.15802 * 3 2 1 29 29 H 1.09006 * 109.46872 * 300.00133 * 6 4 2 30 30 H 1.08995 * 109.47018 * 60.00101 * 6 4 2 31 31 H 1.08995 * 109.47046 * 180.02562 * 6 4 2 32 32 H 1.09005 * 109.46189 * 54.13880 * 8 7 4 33 33 H 1.09005 * 109.45950 * 294.16743 * 8 7 4 34 34 H 1.09005 * 109.49758 * 179.12636 * 9 8 7 35 35 H 1.09002 * 109.50508 * 299.20154 * 9 8 7 36 36 H 1.09004 * 109.51935 * 62.24692 * 10 9 8 37 37 H 1.08996 * 109.51834 * 182.37395 * 10 9 8 38 38 H 0.97003 * 120.00245 * 180.02562 * 16 15 13 39 39 H 1.09001 * 109.46938 * 65.83605 * 21 7 4 40 40 H 1.08993 * 109.46660 * 305.85955 * 21 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6049 -0.2621 2.1369 6 6 1.6361 -2.1957 1.1876 7 7 3.5040 -0.6168 1.3116 8 6 4.1264 -1.2357 0.1344 9 6 5.6352 -0.9812 0.1606 10 6 6.2255 -1.5729 1.4436 11 6 5.5264 -0.9471 2.6536 12 1 5.7132 0.1266 2.6667 13 6 6.0602 -1.5670 3.9192 14 1 5.3920 -2.0882 4.5887 15 6 7.4015 -1.4686 4.2224 16 7 8.2153 -0.8342 3.4070 17 14 8.0631 -2.2365 5.7917 18 1 8.4815 -3.6352 5.5201 19 1 9.2311 -1.4547 6.2710 20 1 7.0027 -2.2300 6.8312 21 6 4.0207 -1.2026 2.5551 22 1 -0.3632 0.5139 0.8900 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 3.1262 1.4439 -0.0924 27 1 1.6032 1.9824 -0.8401 28 1 1.7541 1.9290 0.9326 29 1 0.5498 -2.2732 1.1413 30 1 2.0712 -2.6548 0.2999 31 1 1.9991 -2.7094 2.0777 32 1 3.7007 -0.8032 -0.7711 33 1 3.9389 -2.3095 0.1467 34 1 6.0990 -1.4539 -0.7052 35 1 5.8238 0.0920 0.1337 36 1 6.0713 -2.6519 1.4516 37 1 7.2930 -1.3571 1.4866 38 1 9.1591 -0.7653 3.6202 39 1 3.8337 -2.2765 2.5560 40 1 3.5184 -0.7460 3.4079 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306565439.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:02 Heat of formation + Delta-G solvation = -37.871482 kcal Electronic energy + Delta-G solvation = -16748.540427 eV Core-core repulsion = 14368.473563 eV Total energy + Delta-G solvation = -2380.066864 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.51860 -37.30828 -34.82960 -33.06910 -31.63209 -30.07294 -27.67039 -26.90561 -25.39532 -23.35054 -23.02881 -20.63056 -19.70438 -18.41138 -17.01197 -16.44606 -15.77734 -15.52554 -15.20312 -15.01070 -14.70918 -14.48759 -13.91783 -13.60499 -13.35435 -13.17300 -12.89626 -12.82423 -12.75350 -12.68360 -12.50627 -12.24115 -11.88241 -11.68543 -11.65075 -11.44704 -11.38487 -11.21748 -10.70308 -10.64113 -10.35501 -8.96887 -8.07470 -6.21831 1.40600 1.41063 1.51518 2.42772 3.16266 3.19186 3.82845 4.10183 4.19548 4.29584 4.32100 4.47591 4.49005 4.57792 4.67138 4.68699 4.76426 4.87875 4.92957 4.94495 4.98449 5.09135 5.10032 5.13960 5.19024 5.23316 5.27794 5.40867 5.44346 5.54212 5.57409 5.64250 5.66803 6.00282 6.16080 6.25594 6.48922 6.50548 6.91417 7.46025 8.97050 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.043898 B = 0.006876 C = 0.006515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.690930 B = 4071.443770 C = 4297.061778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.083 4.083 3 C -0.132 4.132 4 C 0.081 3.919 5 H 0.070 0.930 6 C -0.181 4.181 7 N -0.536 5.536 8 C 0.065 3.935 9 C -0.111 4.111 10 C -0.102 4.102 11 C 0.053 3.947 12 H -0.005 1.005 13 C -0.536 4.536 14 H 0.049 0.951 15 C 0.014 3.986 16 N -0.916 5.916 17 Si 0.954 3.046 18 H -0.276 1.276 19 H -0.283 1.283 20 H -0.269 1.269 21 C 0.084 3.916 22 H 0.054 0.946 23 H 0.066 0.934 24 H 0.061 0.939 25 H 0.070 0.930 26 H 0.045 0.955 27 H 0.060 0.940 28 H 0.043 0.957 29 H 0.079 0.921 30 H 0.056 0.944 31 H 0.039 0.961 32 H 0.088 0.912 33 H 0.026 0.974 34 H 0.066 0.934 35 H 0.049 0.951 36 H 0.020 0.980 37 H 0.056 0.944 38 H 0.260 0.740 39 H 0.017 0.983 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.070 -0.026 -7.847 15.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.102 4.102 3 C -0.190 4.190 4 C -0.027 4.027 5 H 0.088 0.912 6 C -0.239 4.239 7 N -0.260 5.260 8 C -0.062 4.062 9 C -0.149 4.149 10 C -0.140 4.140 11 C 0.034 3.966 12 H 0.013 0.987 13 C -0.575 4.575 14 H 0.068 0.932 15 C -0.185 4.185 16 N -0.555 5.555 17 Si 0.779 3.221 18 H -0.201 1.201 19 H -0.208 1.208 20 H -0.193 1.193 21 C -0.044 4.044 22 H 0.073 0.927 23 H 0.085 0.915 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.064 0.936 27 H 0.079 0.921 28 H 0.063 0.937 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.106 0.894 33 H 0.044 0.956 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.039 0.961 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.035 0.965 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -12.765 0.532 -7.861 15.001 hybrid contribution 0.711 -1.206 1.120 1.793 sum -12.054 -0.674 -6.741 13.827 Atomic orbital electron populations 1.21836 0.93645 1.02191 1.02234 1.21135 0.96330 0.96306 0.96429 1.21638 1.00948 0.95422 1.00943 1.21855 0.86997 0.94731 0.99115 0.91196 1.22443 1.02692 0.97524 1.01287 1.62149 1.05015 1.56813 1.01991 1.22042 0.94222 0.96331 0.93635 1.21597 0.95373 1.00326 0.97614 1.21440 1.01378 0.96659 0.94561 1.18581 0.90281 0.94494 0.93237 0.98729 1.21533 0.93818 1.35302 1.06841 0.93243 1.25720 0.97333 0.95703 0.99716 1.70040 1.04265 1.43290 1.37942 0.85625 0.77923 0.78424 0.80087 1.20125 1.20818 1.19349 1.21919 0.96510 0.95230 0.90743 0.92734 0.91528 0.92001 0.91207 0.93562 0.92140 0.93741 0.90177 0.92515 0.94178 0.89417 0.95565 0.91522 0.93258 0.96145 0.92537 0.93084 0.96532 0.93289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 8.95 71.98 0.64 -1.88 16 2 C -0.08 -1.92 1.98 -10.79 -0.02 -1.94 16 3 C -0.13 -3.25 8.89 71.98 0.64 -2.61 16 4 C 0.08 2.32 1.94 44.92 0.09 2.41 16 5 H 0.07 2.08 8.09 -2.39 -0.02 2.06 16 6 C -0.18 -4.70 8.26 71.98 0.59 -4.11 16 7 N -0.54 -19.33 3.78 -871.10 -3.29 -22.62 16 8 C 0.07 2.21 4.53 86.32 0.39 2.60 16 9 C -0.11 -4.38 6.09 30.65 0.19 -4.20 16 10 C -0.10 -5.04 5.02 30.67 0.15 -4.88 16 11 C 0.05 2.77 2.26 -11.49 -0.03 2.75 16 12 H -0.01 -0.33 8.14 -2.39 -0.02 -0.34 16 13 C -0.54 -30.55 8.56 25.60 0.22 -30.33 16 14 H 0.05 2.77 7.74 -2.91 -0.02 2.74 16 15 C 0.01 0.79 5.30 84.65 0.45 1.24 16 16 N -0.92 -54.29 11.35 21.45 0.24 -54.04 16 17 Si 0.95 44.52 29.54 68.60 2.03 46.54 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 19 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 20 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 21 C 0.08 3.65 4.24 86.33 0.37 4.01 16 22 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 23 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.06 1.01 6.56 -2.39 -0.02 0.99 16 25 H 0.07 1.58 6.56 -2.39 -0.02 1.56 16 26 H 0.05 1.34 7.55 -2.39 -0.02 1.32 16 27 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.08 1.67 6.57 -2.38 -0.02 1.66 16 30 H 0.06 1.46 6.53 -2.39 -0.02 1.44 16 31 H 0.04 1.18 6.64 -2.39 -0.02 1.16 16 32 H 0.09 2.52 6.13 -2.38 -0.01 2.51 16 33 H 0.03 0.89 6.62 -2.38 -0.02 0.88 16 34 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 35 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.06 3.15 6.15 -2.39 -0.01 3.13 16 38 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 39 H 0.02 0.73 6.72 -2.39 -0.02 0.71 16 40 H 0.05 2.16 8.08 -2.39 -0.02 2.14 16 Total: -1.00 -60.83 295.41 3.64 -57.19 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: 0.98 Total: 9.88 kcal Atomic # 6 Polarization: -40.62 SS G_CDS: 3.68 Total: -36.94 kcal Atomic # 7 Polarization: -73.62 SS G_CDS: -3.05 Total: -76.67 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Total: -60.83 3.64 -57.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306565439.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.321 kcal (2) G-P(sol) polarization free energy of solvation -60.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds