Wall clock time and date at job start Mon Mar 30 2020 03:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99696 * 2 1 4 4 H 1.48501 * 109.46739 * 269.99468 * 3 2 1 5 5 H 1.48495 * 109.47222 * 29.99945 * 3 2 1 6 6 H 1.48497 * 109.46846 * 149.99994 * 3 2 1 7 7 C 1.37875 * 120.00189 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99790 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00252 * 180.02562 * 7 2 1 10 10 C 1.50693 * 109.47483 * 180.02562 * 9 7 2 11 11 C 1.38154 * 119.92231 * 89.99535 * 10 9 7 12 12 C 1.39044 * 120.07880 * 180.02562 * 11 10 9 13 13 S 1.76199 * 120.03728 * 179.97438 * 12 11 10 14 14 C 1.38814 * 119.92482 * 0.25878 * 12 11 10 15 15 C 1.38820 * 119.83851 * 359.49121 * 14 12 11 16 16 S 1.76198 * 120.04198 * 180.25114 * 15 14 12 17 17 C 1.38153 * 119.92164 * 270.02344 * 10 9 7 18 18 H 0.97004 * 120.00032 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.47262 * 59.99515 * 9 7 2 20 20 H 1.09003 * 109.46929 * 300.00370 * 9 7 2 21 21 H 1.07997 * 119.95785 * 0.04558 * 11 10 9 22 22 H 1.34496 * 103.00166 * 89.99943 * 13 12 11 23 23 H 1.07992 * 120.08351 * 179.72564 * 14 12 11 24 24 H 1.34500 * 103.00077 * 270.25578 * 16 15 14 25 25 H 1.07999 * 119.95676 * 359.97438 * 17 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0139 -2.6147 0.0010 11 6 4.2440 -3.2642 -1.1964 12 6 4.7071 -4.5753 -1.2004 13 16 4.9995 -5.4028 -2.7282 14 6 4.9330 -5.2335 0.0008 15 6 4.7057 -4.5760 1.2021 16 16 4.9970 -5.4042 2.7298 17 6 4.2427 -3.2649 1.1983 18 1 -0.4850 0.8401 -0.0004 19 1 3.8745 -0.6799 0.8911 20 1 3.8752 -0.6803 -0.8888 21 1 4.0643 -2.7529 -2.1306 22 1 6.2854 -5.1085 -2.9904 23 1 5.2884 -6.2533 0.0007 24 1 3.8113 -5.9828 2.9912 25 1 4.0617 -2.7541 2.1325 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306641730.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:27 Heat of formation + Delta-G solvation = 21.048044 kcal Electronic energy + Delta-G solvation = -10911.430826 eV Core-core repulsion = 8914.206700 eV Total energy + Delta-G solvation = -1997.224126 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 226.018 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.89807 -33.65763 -31.71405 -30.84512 -27.85883 -23.32900 -22.82394 -20.96498 -17.90406 -17.17740 -16.88977 -16.19022 -15.25672 -14.92465 -14.30182 -14.00322 -13.16090 -12.74057 -12.32330 -11.90335 -11.78623 -11.47364 -11.19567 -10.66832 -10.42833 -10.18971 -10.01201 -9.51924 -8.69431 -8.65513 -8.23998 -8.16771 -8.02547 -6.17339 -4.18485 1.04150 1.34578 1.75242 1.92471 2.87470 2.94500 3.22024 3.30626 3.31629 3.95115 4.32363 5.13091 5.14572 5.39714 5.47256 5.69002 5.76245 6.14899 6.37426 6.51417 6.60145 6.82078 7.08371 7.23948 7.55181 8.36269 8.86055 9.41679 10.95304 Molecular weight = 226.02amu Principal moments of inertia in cm(-1) A = 0.024529 B = 0.008142 C = 0.006644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.242142 B = 3438.124204 C = 4213.593845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.072 3.928 3 Si 0.877 3.123 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.520 4.520 8 H 0.074 0.926 9 C 0.016 3.984 10 C -0.041 4.041 11 C -0.046 4.046 12 C -0.116 4.116 13 S -0.132 6.132 14 C -0.049 4.049 15 C -0.115 4.115 16 S -0.138 6.138 17 C -0.046 4.046 18 H 0.266 0.734 19 H 0.033 0.967 20 H 0.028 0.972 21 H 0.137 0.863 22 H 0.070 0.930 23 H 0.136 0.864 24 H 0.076 0.924 25 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.807 -8.072 0.039 13.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.704 3.296 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.188 1.188 7 C -0.558 4.558 8 H 0.092 0.908 9 C -0.022 4.022 10 C -0.045 4.045 11 C -0.067 4.067 12 C -0.230 4.230 13 S 0.025 5.975 14 C -0.072 4.072 15 C -0.229 4.229 16 S 0.019 5.981 17 C -0.066 4.066 18 H 0.076 0.924 19 H 0.051 0.949 20 H 0.046 0.954 21 H 0.155 0.845 22 H 0.034 0.966 23 H 0.154 0.846 24 H 0.041 0.959 25 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 10.950 -8.836 0.042 14.070 hybrid contribution -0.103 1.684 -0.019 1.688 sum 10.847 -7.151 0.022 12.992 Atomic orbital electron populations 1.69891 1.06303 1.27187 1.49979 1.24982 0.94737 0.99058 0.94218 0.86813 0.80411 0.83605 0.78762 1.20024 1.21108 1.18850 1.20877 0.87959 0.94801 1.52173 0.90803 1.18844 0.97719 0.87640 0.97955 1.20398 0.94023 0.98733 0.91359 1.21734 0.93421 0.92245 0.99254 1.21102 1.09930 0.97498 0.94453 1.85920 1.16734 1.68880 1.25967 1.21748 0.96126 0.99145 0.90192 1.21095 1.10014 0.97345 0.94441 1.85730 1.20381 1.66002 1.26020 1.21729 0.93090 0.92532 0.99258 0.92417 0.94865 0.95366 0.84498 0.96572 0.84644 0.95936 0.84504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.69 13.96 55.43 0.77 -25.92 15 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 15 3 Si 0.88 20.52 27.47 -169.99 -4.67 15.85 15 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 15 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 15 6 H -0.26 -5.86 6.54 56.52 0.37 -5.49 15 7 C -0.52 -14.10 9.65 -34.44 -0.33 -14.43 15 8 H 0.07 2.21 7.98 -52.49 -0.42 1.79 15 9 C 0.02 0.35 4.17 -29.04 -0.12 0.23 15 10 C -0.04 -0.81 5.06 -104.69 -0.53 -1.34 15 11 C -0.05 -0.82 9.44 -39.31 -0.37 -1.19 15 12 C -0.12 -1.86 6.11 -39.07 -0.24 -2.10 15 13 S -0.13 -1.83 25.77 -107.50 -2.77 -4.60 15 14 C -0.05 -0.74 9.53 -39.15 -0.37 -1.11 15 15 C -0.12 -1.84 6.11 -39.07 -0.24 -2.08 15 16 S -0.14 -1.91 25.77 -107.50 -2.77 -4.68 15 17 C -0.05 -0.81 9.44 -39.31 -0.37 -1.18 15 18 H 0.27 7.40 8.31 -40.82 -0.34 7.06 15 19 H 0.03 0.73 7.14 -51.93 -0.37 0.36 15 20 H 0.03 0.61 7.51 -51.93 -0.39 0.22 15 21 H 0.14 2.35 8.06 -52.49 -0.42 1.93 15 22 H 0.07 0.86 9.07 97.61 0.89 1.75 15 23 H 0.14 1.77 8.06 -52.49 -0.42 1.34 15 24 H 0.08 1.02 9.07 97.61 0.89 1.90 15 25 H 0.14 2.36 8.06 -52.49 -0.42 1.93 15 LS Contribution 251.97 15.07 3.80 3.80 Total: -1.00 -28.06 251.97 -8.16 -36.22 By element: Atomic # 1 Polarization: 0.46 SS G_CDS: 0.16 Total: 0.62 kcal Atomic # 6 Polarization: -18.61 SS G_CDS: -2.67 Total: -21.28 kcal Atomic # 7 Polarization: -26.69 SS G_CDS: 0.77 Total: -25.92 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.67 Total: 15.85 kcal Atomic # 16 Polarization: -3.74 SS G_CDS: -5.54 Total: -9.28 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -28.06 -8.16 -36.22 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306641730.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.270 kcal (2) G-P(sol) polarization free energy of solvation -28.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds