Wall clock time and date at job start Mon Mar 30 2020 03:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99696 * 2 1 4 4 H 1.48501 * 109.46739 * 269.99468 * 3 2 1 5 5 H 1.48495 * 109.47222 * 29.99945 * 3 2 1 6 6 H 1.48497 * 109.46846 * 149.99994 * 3 2 1 7 7 C 1.37875 * 120.00189 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99790 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00252 * 180.02562 * 7 2 1 10 10 C 1.50693 * 109.47483 * 180.02562 * 9 7 2 11 11 C 1.38154 * 119.92231 * 89.99535 * 10 9 7 12 12 C 1.39044 * 120.07880 * 180.02562 * 11 10 9 13 13 S 1.76199 * 120.03728 * 179.97438 * 12 11 10 14 14 C 1.38814 * 119.92482 * 0.25878 * 12 11 10 15 15 C 1.38820 * 119.83851 * 359.49121 * 14 12 11 16 16 S 1.76198 * 120.04198 * 180.25114 * 15 14 12 17 17 C 1.38153 * 119.92164 * 270.02344 * 10 9 7 18 18 H 0.97004 * 120.00032 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.47262 * 59.99515 * 9 7 2 20 20 H 1.09003 * 109.46929 * 300.00370 * 9 7 2 21 21 H 1.07997 * 119.95785 * 0.04558 * 11 10 9 22 22 H 1.34496 * 103.00166 * 89.99943 * 13 12 11 23 23 H 1.07992 * 120.08351 * 179.72564 * 14 12 11 24 24 H 1.34500 * 103.00077 * 270.25578 * 16 15 14 25 25 H 1.07999 * 119.95676 * 359.97438 * 17 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0139 -2.6147 0.0010 11 6 4.2440 -3.2642 -1.1964 12 6 4.7071 -4.5753 -1.2004 13 16 4.9995 -5.4028 -2.7282 14 6 4.9330 -5.2335 0.0008 15 6 4.7057 -4.5760 1.2021 16 16 4.9970 -5.4042 2.7298 17 6 4.2427 -3.2649 1.1983 18 1 -0.4850 0.8401 -0.0004 19 1 3.8745 -0.6799 0.8911 20 1 3.8752 -0.6803 -0.8888 21 1 4.0643 -2.7529 -2.1306 22 1 6.2854 -5.1085 -2.9904 23 1 5.2884 -6.2533 0.0007 24 1 3.8113 -5.9828 2.9912 25 1 4.0617 -2.7541 2.1325 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306641730.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:27 Heat of formation + Delta-G solvation = 5.337638 kcal Electronic energy + Delta-G solvation = -10912.112080 eV Core-core repulsion = 8914.206700 eV Total energy + Delta-G solvation = -1997.905380 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 226.018 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.24461 -35.50088 -33.50431 -32.15502 -29.59496 -25.09347 -24.13965 -22.47972 -19.15560 -18.99609 -18.27619 -17.46103 -16.62317 -16.43871 -15.98535 -15.23630 -14.90573 -14.23903 -13.94147 -13.62718 -13.23516 -12.82217 -12.62632 -12.34432 -12.06326 -11.77668 -11.61676 -11.33569 -10.79743 -9.93483 -9.67504 -9.26528 -9.12108 -8.30815 -6.37187 -0.23755 0.08695 0.55048 0.71933 1.38508 1.40186 1.51353 1.72546 1.85700 2.35162 2.62385 3.04273 3.82520 4.07330 4.14535 4.35060 4.37117 4.77176 4.98654 5.02778 5.11300 5.15951 5.51601 5.67425 5.69874 6.22373 6.69146 7.26967 8.85616 Molecular weight = 226.02amu Principal moments of inertia in cm(-1) A = 0.024529 B = 0.008142 C = 0.006644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.242142 B = 3438.124204 C = 4213.593845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.011 3.989 3 Si 0.949 3.051 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.241 1.241 7 C -0.524 4.524 8 H 0.028 0.972 9 C 0.021 3.979 10 C -0.069 4.069 11 C -0.056 4.056 12 C -0.120 4.120 13 S -0.122 6.122 14 C -0.039 4.039 15 C -0.122 4.122 16 S -0.114 6.114 17 C -0.055 4.055 18 H 0.268 0.732 19 H 0.039 0.961 20 H 0.038 0.962 21 H 0.137 0.863 22 H 0.089 0.911 23 H 0.163 0.837 24 H 0.081 0.919 25 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.942 -8.505 0.001 15.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.187 4.187 3 Si 0.772 3.228 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.165 1.165 7 C -0.561 4.561 8 H 0.046 0.954 9 C -0.016 4.016 10 C -0.072 4.072 11 C -0.076 4.076 12 C -0.234 4.234 13 S 0.035 5.965 14 C -0.062 4.062 15 C -0.235 4.235 16 S 0.043 5.957 17 C -0.076 4.076 18 H 0.077 0.923 19 H 0.058 0.942 20 H 0.056 0.944 21 H 0.155 0.845 22 H 0.053 0.947 23 H 0.180 0.820 24 H 0.045 0.955 25 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 13.106 -9.285 0.003 16.062 hybrid contribution -0.769 1.651 -0.017 1.821 sum 12.337 -7.634 -0.014 14.508 Atomic orbital electron populations 1.70055 1.08426 1.28360 1.52010 1.25963 0.95537 1.03392 0.93798 0.85676 0.79657 0.78071 0.79421 1.18950 1.21105 1.16468 1.21125 0.90694 0.93033 1.51287 0.95399 1.18688 0.94339 0.90154 0.98445 1.20205 0.96335 0.97847 0.92833 1.21786 0.93877 0.93280 0.98677 1.21254 1.09165 0.96860 0.96078 1.85894 1.18137 1.67947 1.24564 1.22102 0.94537 1.00038 0.89503 1.21272 1.09218 0.96870 0.96161 1.85640 1.20249 1.65308 1.24506 1.21783 0.93561 0.93558 0.98689 0.92315 0.94241 0.94417 0.84530 0.94683 0.81972 0.95485 0.84569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.30 13.96 21.45 0.30 -58.00 15 2 C 0.01 0.59 5.47 84.65 0.46 1.06 15 3 Si 0.95 42.16 27.47 68.60 1.88 44.04 15 4 H -0.26 -11.27 7.11 99.48 0.71 -10.56 15 5 H -0.29 -12.58 7.11 99.48 0.71 -11.88 15 6 H -0.24 -9.76 6.54 99.48 0.65 -9.11 15 7 C -0.52 -29.17 9.65 25.60 0.25 -28.92 15 8 H 0.03 1.75 7.98 -2.91 -0.02 1.73 15 9 C 0.02 0.95 4.17 29.10 0.12 1.07 15 10 C -0.07 -2.67 5.06 -19.91 -0.10 -2.77 15 11 C -0.06 -1.95 9.44 22.44 0.21 -1.74 15 12 C -0.12 -3.63 6.11 22.60 0.14 -3.49 15 13 S -0.12 -3.09 25.77 -56.49 -1.46 -4.55 15 14 C -0.04 -1.09 9.53 22.55 0.21 -0.87 15 15 C -0.12 -3.68 6.11 22.60 0.14 -3.55 15 16 S -0.11 -2.89 25.77 -56.49 -1.46 -4.35 15 17 C -0.06 -1.95 9.44 22.44 0.21 -1.74 15 18 H 0.27 15.33 8.31 -92.71 -0.77 14.56 15 19 H 0.04 1.69 7.14 -2.39 -0.02 1.67 15 20 H 0.04 1.59 7.51 -2.39 -0.02 1.57 15 21 H 0.14 4.67 8.06 -2.91 -0.02 4.64 15 22 H 0.09 1.92 9.07 73.35 0.67 2.58 15 23 H 0.16 3.65 8.06 -2.91 -0.02 3.63 15 24 H 0.08 1.98 9.07 73.35 0.67 2.64 15 25 H 0.14 4.67 8.06 -2.91 -0.02 4.65 15 Total: -1.00 -61.09 251.97 3.41 -57.68 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: 2.50 Total: 6.13 kcal Atomic # 6 Polarization: -42.60 SS G_CDS: 1.65 Total: -40.96 kcal Atomic # 7 Polarization: -58.30 SS G_CDS: 0.30 Total: -58.00 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 1.88 Total: 44.04 kcal Atomic # 16 Polarization: -5.98 SS G_CDS: -2.91 Total: -8.89 kcal Total: -61.09 3.41 -57.68 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306641730.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.014 kcal (2) G-P(sol) polarization free energy of solvation -61.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.677 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds