Wall clock time and date at job start Mon Mar 30 2020 03:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 119.99549 * 2 1 4 4 H 1.48497 * 109.47207 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47249 * 300.00101 * 3 2 1 6 6 H 1.48497 * 109.47216 * 60.00008 * 3 2 1 7 7 C 1.37875 * 120.00460 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99842 * 180.02562 * 7 2 1 9 9 C 1.50692 * 119.99924 * 0.02562 * 7 2 1 10 10 C 1.50701 * 109.47133 * 179.97438 * 9 7 2 11 11 C 1.38817 * 120.07978 * 90.00027 * 10 9 7 12 12 S 1.76207 * 120.03948 * 359.95382 * 11 10 9 13 13 C 1.39047 * 119.92135 * 180.23308 * 11 10 9 14 14 C 1.38144 * 120.07847 * 359.50673 * 13 11 10 15 15 C 1.38151 * 120.15885 * 0.47154 * 14 13 11 16 16 C 1.38818 * 120.08317 * 269.97777 * 10 9 7 17 17 S 1.76203 * 120.03600 * 359.97438 * 16 10 9 18 18 H 0.97001 * 120.00754 * 359.97438 * 1 2 3 19 19 H 1.08999 * 109.47411 * 59.99979 * 9 7 2 20 20 H 1.08999 * 109.47483 * 299.99929 * 9 7 2 21 21 H 1.34505 * 102.99714 * 90.00129 * 12 11 10 22 22 H 1.08002 * 119.96012 * 179.72454 * 13 11 10 23 23 H 1.08002 * 119.92039 * 180.25541 * 14 13 11 24 24 H 1.07998 * 119.95909 * 179.76147 * 15 14 13 25 25 H 1.34501 * 102.99665 * 90.00364 * 17 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8902 2.3966 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2306 -3.6444 0.0005 11 6 2.6827 -4.1733 1.2018 12 16 2.1132 -3.5053 2.7296 13 6 3.5901 -5.2269 1.1979 14 6 4.0338 -5.7541 0.0006 15 6 3.5856 -5.2307 -1.1968 16 6 2.6824 -4.1736 -1.2007 17 16 2.1110 -3.5072 -2.7284 18 1 -0.4851 0.8400 0.0004 19 1 0.6249 -2.5571 -0.8896 20 1 0.6242 -2.5567 0.8903 21 1 1.0187 -4.2416 2.9924 22 1 3.9457 -5.6358 2.1321 23 1 4.7354 -6.5752 0.0006 24 1 3.9376 -5.6428 -2.1309 25 1 3.0087 -2.5408 -2.9916 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306719469.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:24 Heat of formation + Delta-G solvation = 25.342972 kcal Electronic energy + Delta-G solvation = -11246.107861 eV Core-core repulsion = 9249.069977 eV Total energy + Delta-G solvation = -1997.037884 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 226.018 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.71832 -33.57177 -31.42127 -30.68791 -27.13532 -23.46224 -22.66373 -20.74993 -17.88565 -16.76750 -16.22153 -15.71248 -15.15312 -14.72637 -14.29299 -13.70834 -12.74549 -12.73892 -12.03762 -11.64593 -11.42092 -11.08548 -10.81479 -10.56198 -10.50204 -9.92067 -9.69950 -9.48013 -8.48368 -8.38040 -8.10240 -7.41941 -7.15989 -5.98824 -4.00040 1.19891 1.67190 2.24407 2.34734 3.27890 3.31532 3.39333 3.42721 3.47203 4.11694 4.48981 5.15220 5.36842 5.37095 5.52189 5.82945 5.90154 6.28271 6.54156 6.65361 6.74572 7.15194 7.61447 7.79048 7.94963 8.32290 8.99980 9.60705 11.12124 Molecular weight = 226.02amu Principal moments of inertia in cm(-1) A = 0.023901 B = 0.011742 C = 0.008945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.224303 B = 2384.000462 C = 3129.404307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.066 3.934 3 Si 0.889 3.111 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.282 1.282 7 C -0.494 4.494 8 H 0.049 0.951 9 C 0.033 3.967 10 C 0.053 3.947 11 C -0.126 4.126 12 S -0.106 6.106 13 C -0.050 4.050 14 C -0.166 4.166 15 C -0.049 4.049 16 C -0.123 4.123 17 S -0.125 6.125 18 H 0.261 0.739 19 H 0.055 0.945 20 H 0.045 0.955 21 H 0.058 0.942 22 H 0.128 0.872 23 H 0.125 0.875 24 H 0.129 0.871 25 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.828 -9.887 -0.086 11.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.136 4.136 3 Si 0.717 3.283 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.207 1.207 7 C -0.532 4.532 8 H 0.067 0.933 9 C -0.005 4.005 10 C 0.048 3.952 11 C -0.240 4.240 12 S 0.052 5.948 13 C -0.071 4.071 14 C -0.188 4.188 15 C -0.070 4.070 16 C -0.236 4.236 17 S 0.033 5.967 18 H 0.070 0.930 19 H 0.073 0.927 20 H 0.063 0.937 21 H 0.022 0.978 22 H 0.146 0.854 23 H 0.143 0.857 24 H 0.147 0.853 25 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 5.068 -9.058 -0.084 10.379 hybrid contribution 1.123 0.353 0.050 1.178 sum 6.190 -8.705 -0.033 10.681 Atomic orbital electron populations 1.69944 1.05829 1.26486 1.50454 1.24847 0.94783 0.98689 0.95285 0.86586 0.80047 0.84046 0.77666 1.19970 1.21085 1.20747 1.20693 0.92282 0.89257 1.50959 0.93285 1.18832 0.92812 0.88556 1.00279 1.21560 0.91632 0.92138 0.89919 1.21210 1.05202 1.01973 0.95611 1.85963 1.34732 1.51597 1.22530 1.21671 0.93893 0.93174 0.98342 1.20953 1.03408 1.02382 0.92018 1.21664 0.93241 0.93793 0.98326 1.21154 1.05053 1.01886 0.95554 1.85361 1.43963 1.44808 1.22616 0.92963 0.92703 0.93688 0.97756 0.85365 0.85684 0.85342 0.95751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.98 13.29 55.43 0.74 -25.25 15 2 C 0.07 1.84 5.46 -17.82 -0.10 1.74 15 3 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 15 4 H -0.27 -6.66 7.11 56.52 0.40 -6.25 15 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 15 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15 7 C -0.49 -13.57 9.09 -34.44 -0.31 -13.89 15 8 H 0.05 1.37 7.74 -52.49 -0.41 0.97 15 9 C 0.03 0.83 4.22 -29.04 -0.12 0.70 15 10 C 0.05 1.14 5.11 -104.19 -0.53 0.61 15 11 C -0.13 -2.45 6.11 -39.07 -0.24 -2.69 15 12 S -0.11 -2.03 23.98 -107.50 -2.58 -4.61 15 13 C -0.05 -0.78 9.79 -39.32 -0.38 -1.16 15 14 C -0.17 -2.34 10.03 -39.65 -0.40 -2.74 15 15 C -0.05 -0.77 9.79 -39.32 -0.38 -1.15 15 16 C -0.12 -2.37 6.11 -39.07 -0.24 -2.61 15 17 S -0.13 -2.38 23.98 -107.50 -2.58 -4.96 15 18 H 0.26 7.22 8.31 -40.82 -0.34 6.88 15 19 H 0.05 1.47 6.78 -51.93 -0.35 1.12 15 20 H 0.05 1.21 6.79 -51.93 -0.35 0.85 15 21 H 0.06 1.03 9.07 97.61 0.89 1.91 15 22 H 0.13 1.65 8.06 -52.49 -0.42 1.22 15 23 H 0.13 1.32 8.06 -52.49 -0.42 0.90 15 24 H 0.13 1.64 8.06 -52.49 -0.42 1.22 15 25 H 0.08 1.51 9.07 97.61 0.89 2.40 15 LS Contribution 249.74 15.07 3.76 3.76 Total: -1.00 -29.11 249.74 -8.13 -37.24 By element: Atomic # 1 Polarization: -1.91 SS G_CDS: 0.26 Total: -1.65 kcal Atomic # 6 Polarization: -18.48 SS G_CDS: -2.71 Total: -21.19 kcal Atomic # 7 Polarization: -25.98 SS G_CDS: 0.74 Total: -25.25 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: -4.41 SS G_CDS: -5.16 Total: -9.57 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -29.11 -8.13 -37.24 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306719469.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.586 kcal (2) G-P(sol) polarization free energy of solvation -29.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds