Wall clock time and date at job start Mon Mar 30 2020 02:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47423 * 2 1 4 4 C 1.50699 * 109.47251 * 239.99984 * 2 1 3 5 5 H 1.07997 * 119.99709 * 245.20789 * 4 2 1 6 6 C 1.37875 * 120.00136 * 65.20263 * 4 2 1 7 7 N 1.31514 * 120.00350 * 195.87498 * 6 4 2 8 8 Si 1.86805 * 119.99838 * 15.87462 * 6 4 2 9 9 H 1.48503 * 109.47180 * 94.99737 * 8 6 4 10 10 H 1.48494 * 109.47036 * 214.99540 * 8 6 4 11 11 H 1.48502 * 109.47030 * 334.99629 * 8 6 4 12 12 N 1.46899 * 109.47103 * 119.99689 * 2 1 3 13 13 C 1.46896 * 111.00399 * 255.76411 * 12 2 1 14 14 C 1.53003 * 108.85201 * 58.19673 * 13 12 2 15 15 C 1.54074 * 108.87688 * 299.73462 * 13 12 2 16 16 C 1.54061 * 112.82022 * 197.49864 * 15 13 12 17 17 C 1.50477 * 112.49920 * 318.29312 * 16 15 13 18 18 C 1.54236 * 108.51730 * 94.14739 * 17 16 15 19 19 C 1.45539 * 112.41273 * 280.00231 * 18 17 16 20 20 C 1.50475 * 108.88230 * 176.76090 * 13 12 2 21 21 H 1.09005 * 109.46644 * 302.76836 * 1 2 3 22 22 H 1.09003 * 109.47159 * 62.76418 * 1 2 3 23 23 H 1.08993 * 109.47261 * 182.76995 * 1 2 3 24 24 H 0.96994 * 120.00250 * 179.97438 * 7 6 4 25 25 H 1.00903 * 110.99764 * 131.81053 * 12 2 1 26 26 H 1.09001 * 109.46881 * 166.65973 * 14 13 12 27 27 H 1.08990 * 109.47385 * 286.66455 * 14 13 12 28 28 H 1.09003 * 109.46748 * 46.66634 * 14 13 12 29 29 H 1.09001 * 108.81079 * 76.64267 * 15 13 12 30 30 H 1.08994 * 108.81841 * 318.36968 * 15 13 12 31 31 H 1.08999 * 108.88396 * 197.51138 * 16 15 13 32 32 H 1.09000 * 108.87310 * 79.06459 * 16 15 13 33 33 H 1.09003 * 109.62896 * 213.86259 * 17 16 15 34 34 H 1.09003 * 109.62816 * 334.43993 * 17 16 15 35 35 H 1.09002 * 108.89424 * 40.75925 * 18 17 16 36 36 H 1.09007 * 108.89365 * 159.24454 * 18 17 16 37 37 H 1.08995 * 108.89710 * 182.69108 * 19 18 17 38 38 H 1.08993 * 108.89562 * 301.18687 * 19 18 17 39 39 H 1.08997 * 109.62986 * 95.20577 * 20 13 12 40 40 H 1.09012 * 109.78189 * 334.72807 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5821 -1.6349 -1.1335 6 6 1.7900 -0.1802 -2.4799 7 7 1.9406 -0.9271 -3.5518 8 14 1.2477 1.5993 -2.6501 9 1 2.4335 2.4558 -2.9063 10 1 0.2956 1.7203 -3.7833 11 1 0.5829 2.0363 -1.3962 12 7 2.0196 -0.6924 1.1995 13 6 2.5131 0.2668 2.1966 14 6 1.3806 1.2295 2.5593 15 6 3.6725 1.0735 1.5811 16 6 4.5325 1.7875 2.6413 17 6 3.7031 2.4106 3.7313 18 6 3.6013 1.4110 4.9015 19 6 2.6003 0.3810 4.6660 20 6 2.9274 -0.4852 3.4324 21 1 -0.3633 0.5563 0.8642 22 1 -0.3634 0.4703 -0.9138 23 1 -0.3633 -1.0264 0.0497 24 1 1.7698 -0.5541 -4.4307 25 1 2.7323 -1.3663 0.9624 26 1 1.6511 1.7874 3.4558 27 1 1.2158 1.9236 1.7352 28 1 0.4680 0.6632 2.7453 29 1 3.2598 1.8200 0.9025 30 1 4.3081 0.3964 1.0107 31 1 5.1178 2.5674 2.1540 32 1 5.2149 1.0640 3.0874 33 1 4.1796 3.3289 4.0745 34 1 2.7058 2.6322 3.3512 35 1 4.5712 0.9345 5.0441 36 1 3.3407 1.9554 5.8092 37 1 2.5425 -0.2624 5.5438 38 1 1.6318 0.8579 4.5157 39 1 3.9985 -0.6841 3.3981 40 1 2.3818 -1.4271 3.4914 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306783909.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:46 Heat of formation + Delta-G solvation = 12.450837 kcal Electronic energy + Delta-G solvation = -17148.345725 eV Core-core repulsion = 14770.461000 eV Total energy + Delta-G solvation = -2377.884725 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.00959 -35.78592 -32.79482 -32.13844 -30.86812 -28.11239 -27.39112 -24.93228 -24.61335 -22.55080 -20.19977 -19.55570 -17.89114 -17.02824 -15.79830 -15.36025 -14.74704 -14.14940 -13.80385 -13.53184 -13.10604 -12.81074 -12.70454 -12.34012 -12.09487 -11.87868 -11.76623 -11.42280 -11.15620 -10.91489 -10.68304 -10.51771 -10.30304 -10.19290 -10.06866 -10.02810 -9.73158 -9.55346 -9.33436 -9.05019 -8.38236 -7.33259 -6.11347 -4.05102 3.26972 3.36896 3.40196 4.41952 4.81965 4.88875 5.01840 5.20570 5.25234 5.38788 5.43899 5.52707 5.57558 5.63496 5.88434 5.89434 6.02423 6.14646 6.18394 6.25313 6.28243 6.34998 6.38418 6.46882 6.53418 6.59743 6.63188 6.67895 6.78646 6.81092 6.89196 7.03726 7.08909 7.56717 7.69035 8.09093 8.43765 8.68804 8.98969 9.56100 11.01950 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.039053 B = 0.008449 C = 0.008110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.800766 B = 3313.286519 C = 3451.614497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.182 3.818 3 H 0.013 0.987 4 C -0.532 4.532 5 H 0.073 0.927 6 C 0.077 3.923 7 N -0.892 5.892 8 Si 0.864 3.136 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.254 1.254 12 N -0.674 5.674 13 C 0.119 3.881 14 C -0.165 4.165 15 C -0.141 4.141 16 C -0.112 4.112 17 C -0.141 4.141 18 C -0.112 4.112 19 C -0.136 4.136 20 C -0.102 4.102 21 H 0.024 0.976 22 H 0.037 0.963 23 H 0.047 0.953 24 H 0.263 0.737 25 H 0.337 0.663 26 H 0.083 0.917 27 H 0.048 0.952 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.089 0.911 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.082 0.918 39 H 0.056 0.944 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.235 5.930 14.856 16.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.073 3.927 3 H 0.031 0.969 4 C -0.570 4.570 5 H 0.091 0.909 6 C -0.126 4.126 7 N -0.529 5.529 8 Si 0.691 3.309 9 H -0.209 1.209 10 H -0.213 1.213 11 H -0.178 1.178 12 N -0.305 5.305 13 C 0.027 3.973 14 C -0.221 4.221 15 C -0.181 4.181 16 C -0.150 4.150 17 C -0.178 4.178 18 C -0.150 4.150 19 C -0.173 4.173 20 C -0.140 4.140 21 H 0.043 0.957 22 H 0.056 0.944 23 H 0.066 0.934 24 H 0.072 0.928 25 H 0.156 0.844 26 H 0.101 0.899 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.107 0.893 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.100 0.900 39 H 0.075 0.925 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.580 5.849 14.922 16.105 hybrid contribution 0.659 1.178 -0.931 1.640 sum 2.239 7.027 13.991 15.816 Atomic orbital electron populations 1.22113 0.98626 1.00171 0.97914 1.19475 0.91873 0.93567 0.87786 0.96897 1.21310 1.36484 1.09722 0.89449 0.90862 1.24895 0.94509 0.97351 0.95801 1.69993 1.49165 1.35405 0.98384 0.87156 0.78736 0.86660 0.78390 1.20890 1.21331 1.17786 1.61000 1.40178 1.15889 1.13395 1.20536 0.92387 0.91822 0.92547 1.22828 0.98828 0.99131 1.01345 1.22731 0.97658 0.99999 0.97701 1.21261 0.98072 0.99124 0.96557 1.21815 1.02412 0.97613 0.95913 1.20458 0.99766 0.97003 0.97768 1.20767 1.00952 0.97697 0.97900 1.21344 1.00662 0.98710 0.93278 0.95696 0.94431 0.93370 0.92755 0.84442 0.89897 0.93330 0.92121 0.92117 0.92021 0.93121 0.92620 0.92798 0.89319 0.92704 0.93029 0.93022 0.89997 0.92548 0.90918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.67 37.16 0.32 -2.64 16 2 C 0.18 4.26 1.27 -68.87 -0.09 4.17 16 3 H 0.01 0.32 3.52 -51.93 -0.18 0.14 16 4 C -0.53 -14.79 9.00 -34.44 -0.31 -15.10 16 5 H 0.07 2.20 7.66 -52.49 -0.40 1.80 16 6 C 0.08 2.22 5.34 -17.82 -0.10 2.12 16 7 N -0.89 -27.25 13.96 55.43 0.77 -26.48 16 8 Si 0.86 21.46 25.81 -169.99 -4.39 17.07 16 9 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 10 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 11 H -0.25 -5.99 5.52 56.52 0.31 -5.67 16 12 N -0.67 -13.66 5.81 -94.96 -0.55 -14.22 16 13 C 0.12 1.98 0.66 -132.30 -0.09 1.89 16 14 C -0.17 -2.61 4.88 37.16 0.18 -2.43 16 15 C -0.14 -2.39 4.24 -25.62 -0.11 -2.49 16 16 C -0.11 -1.52 5.31 -27.44 -0.15 -1.67 16 17 C -0.14 -1.69 5.57 -27.34 -0.15 -1.84 16 18 C -0.11 -1.24 5.21 -29.60 -0.15 -1.40 16 19 C -0.14 -1.62 5.14 -29.60 -0.15 -1.77 16 20 C -0.10 -1.45 5.13 -27.34 -0.14 -1.59 16 21 H 0.02 0.50 6.14 -51.93 -0.32 0.18 16 22 H 0.04 0.88 5.10 -51.93 -0.26 0.61 16 23 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 24 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 25 H 0.34 7.04 7.84 -39.29 -0.31 6.73 16 26 H 0.08 1.10 2.67 -51.93 -0.14 0.96 16 27 H 0.05 0.84 6.56 -51.93 -0.34 0.50 16 28 H 0.06 0.99 7.34 -51.93 -0.38 0.61 16 29 H 0.06 1.13 6.30 -51.93 -0.33 0.81 16 30 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.72 6.63 -51.93 -0.34 0.38 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.09 1.13 4.24 -51.93 -0.22 0.91 16 35 H 0.05 0.60 7.47 -51.93 -0.39 0.21 16 36 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.99 4.85 -51.93 -0.25 0.74 16 39 H 0.06 0.78 6.98 -51.93 -0.36 0.42 16 40 H 0.07 1.08 7.95 -51.92 -0.41 0.67 16 LS Contribution 274.07 15.07 4.13 4.13 Total: -1.00 -28.97 274.07 -7.37 -36.33 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -6.40 Total: 5.91 kcal Atomic # 6 Polarization: -21.82 SS G_CDS: -0.93 Total: -22.75 kcal Atomic # 7 Polarization: -40.92 SS G_CDS: 0.22 Total: -40.69 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.39 Total: 17.07 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.97 -7.37 -36.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306783909.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.782 kcal (2) G-P(sol) polarization free energy of solvation -28.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds