Wall clock time and date at job start Mon Mar 30 2020 02:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47423 * 2 1 4 4 C 1.50699 * 109.47251 * 239.99984 * 2 1 3 5 5 H 1.07997 * 119.99709 * 245.20789 * 4 2 1 6 6 C 1.37875 * 120.00136 * 65.20263 * 4 2 1 7 7 N 1.31514 * 120.00350 * 195.87498 * 6 4 2 8 8 Si 1.86805 * 119.99838 * 15.87462 * 6 4 2 9 9 H 1.48503 * 109.47180 * 94.99737 * 8 6 4 10 10 H 1.48494 * 109.47036 * 214.99540 * 8 6 4 11 11 H 1.48502 * 109.47030 * 334.99629 * 8 6 4 12 12 N 1.46899 * 109.47103 * 119.99689 * 2 1 3 13 13 C 1.46896 * 111.00399 * 255.76411 * 12 2 1 14 14 C 1.53003 * 108.85201 * 58.19673 * 13 12 2 15 15 C 1.54074 * 108.87688 * 299.73462 * 13 12 2 16 16 C 1.54061 * 112.82022 * 197.49864 * 15 13 12 17 17 C 1.50477 * 112.49920 * 318.29312 * 16 15 13 18 18 C 1.54236 * 108.51730 * 94.14739 * 17 16 15 19 19 C 1.45539 * 112.41273 * 280.00231 * 18 17 16 20 20 C 1.50475 * 108.88230 * 176.76090 * 13 12 2 21 21 H 1.09005 * 109.46644 * 302.76836 * 1 2 3 22 22 H 1.09003 * 109.47159 * 62.76418 * 1 2 3 23 23 H 1.08993 * 109.47261 * 182.76995 * 1 2 3 24 24 H 0.96994 * 120.00250 * 179.97438 * 7 6 4 25 25 H 1.00903 * 110.99764 * 131.81053 * 12 2 1 26 26 H 1.09001 * 109.46881 * 166.65973 * 14 13 12 27 27 H 1.08990 * 109.47385 * 286.66455 * 14 13 12 28 28 H 1.09003 * 109.46748 * 46.66634 * 14 13 12 29 29 H 1.09001 * 108.81079 * 76.64267 * 15 13 12 30 30 H 1.08994 * 108.81841 * 318.36968 * 15 13 12 31 31 H 1.08999 * 108.88396 * 197.51138 * 16 15 13 32 32 H 1.09000 * 108.87310 * 79.06459 * 16 15 13 33 33 H 1.09003 * 109.62896 * 213.86259 * 17 16 15 34 34 H 1.09003 * 109.62816 * 334.43993 * 17 16 15 35 35 H 1.09002 * 108.89424 * 40.75925 * 18 17 16 36 36 H 1.09007 * 108.89365 * 159.24454 * 18 17 16 37 37 H 1.08995 * 108.89710 * 182.69108 * 19 18 17 38 38 H 1.08993 * 108.89562 * 301.18687 * 19 18 17 39 39 H 1.08997 * 109.62986 * 95.20577 * 20 13 12 40 40 H 1.09012 * 109.78189 * 334.72807 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5821 -1.6349 -1.1335 6 6 1.7900 -0.1802 -2.4799 7 7 1.9406 -0.9271 -3.5518 8 14 1.2477 1.5993 -2.6501 9 1 2.4335 2.4558 -2.9063 10 1 0.2956 1.7203 -3.7833 11 1 0.5829 2.0363 -1.3962 12 7 2.0196 -0.6924 1.1995 13 6 2.5131 0.2668 2.1966 14 6 1.3806 1.2295 2.5593 15 6 3.6725 1.0735 1.5811 16 6 4.5325 1.7875 2.6413 17 6 3.7031 2.4106 3.7313 18 6 3.6013 1.4110 4.9015 19 6 2.6003 0.3810 4.6660 20 6 2.9274 -0.4852 3.4324 21 1 -0.3633 0.5563 0.8642 22 1 -0.3634 0.4703 -0.9138 23 1 -0.3633 -1.0264 0.0497 24 1 1.7698 -0.5541 -4.4307 25 1 2.7323 -1.3663 0.9624 26 1 1.6511 1.7874 3.4558 27 1 1.2158 1.9236 1.7352 28 1 0.4680 0.6632 2.7453 29 1 3.2598 1.8200 0.9025 30 1 4.3081 0.3964 1.0107 31 1 5.1178 2.5674 2.1540 32 1 5.2149 1.0640 3.0874 33 1 4.1796 3.3289 4.0745 34 1 2.7058 2.6322 3.3512 35 1 4.5712 0.9345 5.0441 36 1 3.3407 1.9554 5.8092 37 1 2.5425 -0.2624 5.5438 38 1 1.6318 0.8579 4.5157 39 1 3.9985 -0.6841 3.3981 40 1 2.3818 -1.4271 3.4914 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306783909.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:46 Heat of formation + Delta-G solvation = -6.225016 kcal Electronic energy + Delta-G solvation = -17149.155571 eV Core-core repulsion = 14770.461000 eV Total energy + Delta-G solvation = -2378.694571 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.23608 -37.33624 -34.68361 -33.24423 -32.60766 -29.59181 -28.73216 -26.97510 -25.81581 -23.74725 -21.79993 -20.78348 -19.44193 -18.77530 -17.22532 -16.94631 -16.20804 -15.53568 -15.21345 -14.80970 -14.74570 -14.55587 -13.90652 -13.77364 -13.66124 -13.28964 -13.04063 -12.98816 -12.79887 -12.67814 -12.14328 -12.00395 -11.88520 -11.64961 -11.43806 -11.18299 -11.09100 -11.04443 -10.92789 -10.55490 -10.50205 -8.99637 -8.34891 -6.32780 1.28505 1.32403 1.42990 2.31282 3.00428 3.55666 3.79097 3.87069 4.12313 4.20944 4.28962 4.40178 4.47462 4.55907 4.65270 4.68501 4.82396 4.87175 4.94292 4.97422 5.01096 5.04217 5.15376 5.19755 5.28000 5.32124 5.36215 5.42656 5.44686 5.47993 5.50127 5.56891 5.68590 5.75317 5.81382 6.08069 6.52379 6.73819 6.93877 7.32830 8.82023 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.039053 B = 0.008449 C = 0.008110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.800766 B = 3313.286519 C = 3451.614497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.191 3.809 3 H 0.014 0.986 4 C -0.535 4.535 5 H 0.034 0.966 6 C 0.021 3.979 7 N -0.940 5.940 8 Si 0.925 3.075 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.232 1.232 12 N -0.677 5.677 13 C 0.116 3.884 14 C -0.162 4.162 15 C -0.139 4.139 16 C -0.106 4.106 17 C -0.140 4.140 18 C -0.112 4.112 19 C -0.130 4.130 20 C -0.099 4.099 21 H 0.052 0.948 22 H 0.029 0.971 23 H 0.037 0.963 24 H 0.265 0.735 25 H 0.329 0.671 26 H 0.115 0.885 27 H 0.031 0.969 28 H 0.056 0.944 29 H 0.038 0.962 30 H 0.035 0.965 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.058 0.942 36 H 0.074 0.926 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.057 0.943 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.928 7.975 17.477 19.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.081 3.919 3 H 0.031 0.969 4 C -0.574 4.574 5 H 0.052 0.948 6 C -0.177 4.177 7 N -0.580 5.580 8 Si 0.749 3.251 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.155 1.155 12 N -0.306 5.306 13 C 0.025 3.975 14 C -0.218 4.218 15 C -0.178 4.178 16 C -0.145 4.145 17 C -0.176 4.176 18 C -0.149 4.149 19 C -0.168 4.168 20 C -0.137 4.137 21 H 0.071 0.929 22 H 0.048 0.952 23 H 0.057 0.943 24 H 0.074 0.926 25 H 0.146 0.854 26 H 0.133 0.867 27 H 0.050 0.950 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.077 0.923 36 H 0.092 0.908 37 H 0.086 0.914 38 H 0.101 0.899 39 H 0.076 0.924 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.271 7.900 17.575 19.311 hybrid contribution 0.822 0.434 -1.731 1.965 sum 2.094 8.334 15.844 18.025 Atomic orbital electron populations 1.22049 0.97763 0.99985 0.98742 1.19296 0.92399 0.93050 0.87166 0.96874 1.21630 1.35619 1.08556 0.91560 0.94775 1.25733 0.94925 1.01657 0.95388 1.70123 1.51250 1.37540 0.99065 0.86161 0.78605 0.81047 0.79263 1.20444 1.20972 1.15461 1.61035 1.40486 1.16560 1.12562 1.20733 0.92794 0.91631 0.92370 1.22868 0.98127 0.98662 1.02175 1.22675 0.97721 0.99101 0.98315 1.21231 0.97844 0.99165 0.96215 1.21809 1.01699 0.98594 0.95545 1.20455 0.99701 0.96604 0.98130 1.20732 1.01189 0.97838 0.96992 1.21310 1.00591 0.98594 0.93243 0.92934 0.95200 0.94343 0.92597 0.85382 0.86744 0.94978 0.92523 0.94303 0.94598 0.92760 0.91875 0.90892 0.89986 0.92312 0.90777 0.91354 0.89905 0.92395 0.91745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.67 8.67 71.98 0.62 -5.05 16 2 C 0.19 8.95 1.27 44.17 0.06 9.00 16 3 H 0.01 0.64 3.52 -2.39 -0.01 0.64 16 4 C -0.54 -30.77 9.00 25.60 0.23 -30.54 16 5 H 0.03 2.17 7.66 -2.91 -0.02 2.15 16 6 C 0.02 1.26 5.34 84.65 0.45 1.71 16 7 N -0.94 -59.23 13.96 21.45 0.30 -58.93 16 8 Si 0.93 44.45 25.81 68.60 1.77 46.22 16 9 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 10 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 11 H -0.23 -10.22 5.52 99.48 0.55 -9.67 16 12 N -0.68 -27.60 5.81 -454.34 -2.64 -30.24 16 13 C 0.12 3.72 0.66 3.08 0.00 3.73 16 14 C -0.16 -4.76 4.88 71.98 0.35 -4.41 16 15 C -0.14 -4.61 4.24 31.32 0.13 -4.47 16 16 C -0.11 -2.66 5.31 30.14 0.16 -2.50 16 17 C -0.14 -2.84 5.57 30.20 0.17 -2.67 16 18 C -0.11 -1.98 5.21 28.73 0.15 -1.83 16 19 C -0.13 -2.62 5.14 28.74 0.15 -2.47 16 20 C -0.10 -2.64 5.13 30.20 0.15 -2.49 16 21 H 0.05 2.03 6.14 -2.38 -0.01 2.01 16 22 H 0.03 1.35 5.10 -2.39 -0.01 1.33 16 23 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 24 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 25 H 0.33 14.25 7.84 -89.69 -0.70 13.54 16 26 H 0.11 2.64 2.67 -2.39 -0.01 2.64 16 27 H 0.03 1.04 6.56 -2.39 -0.02 1.02 16 28 H 0.06 1.71 7.34 -2.39 -0.02 1.69 16 29 H 0.04 1.43 6.30 -2.39 -0.02 1.42 16 30 H 0.04 1.34 8.08 -2.39 -0.02 1.32 16 31 H 0.05 1.31 8.14 -2.39 -0.02 1.30 16 32 H 0.06 1.49 6.63 -2.39 -0.02 1.48 16 33 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.08 1.79 4.24 -2.39 -0.01 1.78 16 35 H 0.06 1.03 7.47 -2.39 -0.02 1.02 16 36 H 0.07 1.05 8.14 -2.38 -0.02 1.04 16 37 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.08 1.67 4.85 -2.39 -0.01 1.66 16 39 H 0.06 1.51 6.98 -2.39 -0.02 1.49 16 40 H 0.06 1.82 7.95 -2.38 -0.02 1.81 16 Total: -1.00 -63.66 274.07 2.23 -61.43 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: 0.17 Total: 23.51 kcal Atomic # 6 Polarization: -44.62 SS G_CDS: 2.63 Total: -41.99 kcal Atomic # 7 Polarization: -86.83 SS G_CDS: -2.34 Total: -89.17 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.77 Total: 46.22 kcal Total: -63.66 2.23 -61.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306783909.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.203 kcal (2) G-P(sol) polarization free energy of solvation -63.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds