Wall clock time and date at job start Mon Mar 30 2020 02:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47806 * 2 1 4 4 C 1.50706 * 109.47116 * 119.99679 * 2 1 3 5 5 H 1.08005 * 119.99742 * 119.99178 * 4 2 1 6 6 C 1.37874 * 120.00057 * 300.00343 * 4 2 1 7 7 N 1.31512 * 119.99886 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00080 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47152 * 89.99431 * 8 6 4 10 10 H 1.48501 * 109.46844 * 209.99889 * 8 6 4 11 11 H 1.48501 * 109.46811 * 329.99282 * 8 6 4 12 12 N 1.46900 * 109.47324 * 239.99474 * 2 1 3 13 13 C 1.46903 * 111.00041 * 145.68900 * 12 2 1 14 14 C 1.53001 * 108.85286 * 54.22653 * 13 12 2 15 15 C 1.54067 * 108.87745 * 295.66491 * 13 12 2 16 16 C 1.54000 * 112.85419 * 197.40952 * 15 13 12 17 17 C 1.50478 * 112.54698 * 318.44312 * 16 15 13 18 18 C 1.54241 * 108.52802 * 94.06901 * 17 16 15 19 19 C 1.45541 * 112.40244 * 280.02006 * 18 17 16 20 20 C 1.50472 * 108.87532 * 172.78531 * 13 12 2 21 21 H 1.08998 * 109.47606 * 186.33448 * 1 2 3 22 22 H 1.09001 * 109.46958 * 306.34358 * 1 2 3 23 23 H 1.09004 * 109.47173 * 66.33492 * 1 2 3 24 24 H 0.96999 * 119.99889 * 180.02562 * 7 6 4 25 25 H 1.00900 * 111.00455 * 269.64328 * 12 2 1 26 26 H 1.09005 * 109.47152 * 46.03185 * 14 13 12 27 27 H 1.08998 * 109.47289 * 166.02858 * 14 13 12 28 28 H 1.08997 * 109.46784 * 286.02865 * 14 13 12 29 29 H 1.08997 * 108.81413 * 318.37022 * 15 13 12 30 30 H 1.08998 * 108.81161 * 76.64464 * 15 13 12 31 31 H 1.08999 * 108.91356 * 197.60829 * 16 15 13 32 32 H 1.08991 * 108.71400 * 79.13811 * 16 15 13 33 33 H 1.08999 * 109.62854 * 334.35562 * 17 16 15 34 34 H 1.09005 * 109.62204 * 213.78256 * 17 16 15 35 35 H 1.09001 * 108.89524 * 159.26566 * 18 17 16 36 36 H 1.08998 * 108.89165 * 40.77694 * 18 17 16 37 37 H 1.09001 * 108.89294 * 301.18460 * 19 18 17 38 38 H 1.09000 * 108.89395 * 182.69539 * 19 18 17 39 39 H 1.08999 * 109.63265 * 334.64388 * 20 13 12 40 40 H 1.09001 * 109.63473 * 95.22531 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5886 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3212 -1.1202 4.0080 9 1 3.6295 -0.5458 4.4124 10 1 1.3429 -0.9491 5.1120 11 1 2.4856 -2.5661 3.7121 12 7 2.0196 -0.6926 -1.1994 13 6 3.2632 -0.0825 -1.6887 14 6 4.2788 -0.0447 -0.5451 15 6 2.9665 1.3604 -2.1400 16 6 4.0665 1.9413 -3.0479 17 6 5.4508 1.5901 -2.5741 18 6 5.9126 0.3162 -3.3109 19 6 5.3558 -0.8950 -2.7269 20 6 3.8157 -0.9300 -2.8026 21 1 -0.3634 -1.0213 0.1134 22 1 -0.3633 0.6090 0.8278 23 1 -0.3634 0.4125 -0.9413 24 1 0.7094 1.1618 3.4843 25 1 2.1457 -1.6778 -1.0219 26 1 4.2926 -1.0102 -0.0393 27 1 5.2695 0.1697 -0.9458 28 1 3.9978 0.7334 0.1647 29 1 2.0203 1.3721 -2.6808 30 1 2.8719 1.9924 -1.2569 31 1 3.9671 3.0264 -3.0733 32 1 3.9295 1.5514 -4.0564 33 1 5.4345 1.4061 -1.4999 34 1 6.1333 2.4102 -2.7976 35 1 7.0004 0.2598 -3.2705 36 1 5.6029 0.3799 -4.3540 37 1 5.6593 -0.9547 -1.6817 38 1 5.7551 -1.7589 -3.2583 39 1 3.4667 -1.9564 -2.6895 40 1 3.4871 -0.5323 -3.7629 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306783912.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:48 Heat of formation + Delta-G solvation = 7.195481 kcal Electronic energy + Delta-G solvation = -17165.326435 eV Core-core repulsion = 14787.213821 eV Total energy + Delta-G solvation = -2378.112614 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.82365 -35.59002 -32.77145 -32.04381 -30.40433 -27.45027 -26.97828 -24.95669 -24.56814 -22.49700 -20.10214 -19.55105 -17.53789 -16.48922 -15.85736 -15.13667 -14.54345 -14.19050 -13.72183 -13.30296 -13.09581 -12.64124 -12.27166 -11.99084 -11.83561 -11.70137 -11.37697 -11.05846 -10.88170 -10.82976 -10.70401 -10.29317 -10.23287 -10.12415 -10.01761 -9.89225 -9.52893 -9.48157 -9.21070 -8.82873 -8.33822 -7.14656 -5.95373 -4.04103 3.28398 3.35931 3.38491 4.43119 4.95792 4.97533 5.20328 5.32206 5.42807 5.53826 5.64174 5.69946 5.72249 5.79356 6.03117 6.14254 6.21060 6.33527 6.34589 6.43772 6.44180 6.47533 6.59485 6.63616 6.75283 6.82123 6.91356 7.02162 7.05442 7.22300 7.30362 7.44068 7.63828 7.82432 8.15942 8.24789 8.43122 8.77701 9.08973 9.61464 11.07047 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.033710 B = 0.008563 C = 0.007947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.404370 B = 3269.077554 C = 3522.579012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.206 3.794 3 H 0.036 0.964 4 C -0.530 4.530 5 H 0.053 0.947 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.885 3.115 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.276 1.276 12 N -0.688 5.688 13 C 0.125 3.875 14 C -0.190 4.190 15 C -0.101 4.101 16 C -0.112 4.112 17 C -0.143 4.143 18 C -0.110 4.110 19 C -0.140 4.140 20 C -0.101 4.101 21 H 0.023 0.977 22 H 0.074 0.926 23 H 0.010 0.990 24 H 0.259 0.741 25 H 0.327 0.673 26 H 0.053 0.947 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.093 0.907 34 H 0.052 0.948 35 H 0.049 0.951 36 H 0.053 0.947 37 H 0.084 0.916 38 H 0.048 0.952 39 H 0.060 0.940 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.586 -0.027 -9.472 12.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.098 3.902 3 H 0.054 0.946 4 C -0.570 4.570 5 H 0.071 0.929 6 C -0.137 4.137 7 N -0.527 5.527 8 Si 0.713 3.287 9 H -0.209 1.209 10 H -0.213 1.213 11 H -0.201 1.201 12 N -0.317 5.317 13 C 0.033 3.967 14 C -0.248 4.248 15 C -0.139 4.139 16 C -0.150 4.150 17 C -0.179 4.179 18 C -0.147 4.147 19 C -0.178 4.178 20 C -0.139 4.139 21 H 0.042 0.958 22 H 0.093 0.907 23 H 0.030 0.970 24 H 0.069 0.931 25 H 0.144 0.856 26 H 0.072 0.928 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.111 0.889 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.102 0.898 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.066 0.451 -9.763 12.061 hybrid contribution 0.872 -0.792 1.702 2.070 sum 7.938 -0.340 -8.061 11.319 Atomic orbital electron populations 1.21693 0.98329 0.99513 0.98604 1.19156 0.91905 0.94445 0.84661 0.94633 1.21824 1.31065 1.12392 0.91697 0.92898 1.24914 0.95033 0.94980 0.98788 1.69901 1.36682 1.22899 1.23215 0.86713 0.78557 0.80133 0.83277 1.20874 1.21290 1.20091 1.61116 1.27722 1.06456 1.36438 1.20354 0.89681 0.93328 0.93294 1.23360 0.99314 1.02936 0.99170 1.21952 0.97527 0.95302 0.99113 1.21265 0.94830 0.99564 0.99317 1.21833 0.96402 0.96676 1.03023 1.20421 0.99405 0.95351 0.99551 1.20829 0.96576 0.97287 1.03078 1.21365 0.93888 0.99712 0.98905 0.95758 0.90703 0.97049 0.93084 0.85560 0.92836 0.91279 0.91905 0.92020 0.92132 0.93031 0.92801 0.88934 0.92954 0.93185 0.92872 0.89782 0.93326 0.92097 0.92191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.07 9.20 37.15 0.34 -2.73 16 2 C 0.21 5.08 1.89 -68.87 -0.13 4.95 16 3 H 0.04 0.96 5.34 -51.93 -0.28 0.68 16 4 C -0.53 -14.07 6.77 -34.44 -0.23 -14.30 16 5 H 0.05 1.40 6.79 -52.48 -0.36 1.04 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.25 11.39 55.43 0.63 -24.62 16 8 Si 0.88 21.25 29.54 -169.99 -5.02 16.23 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.69 -14.47 5.89 -94.96 -0.56 -15.03 16 13 C 0.13 2.25 0.69 -132.31 -0.09 2.16 16 14 C -0.19 -3.55 4.97 37.16 0.18 -3.37 16 15 C -0.10 -1.77 4.31 -25.65 -0.11 -1.88 16 16 C -0.11 -1.59 5.31 -27.47 -0.15 -1.74 16 17 C -0.14 -1.89 5.56 -27.34 -0.15 -2.05 16 18 C -0.11 -1.35 5.21 -29.60 -0.15 -1.51 16 19 C -0.14 -1.88 5.14 -29.60 -0.15 -2.03 16 20 C -0.10 -1.55 5.16 -27.35 -0.14 -1.69 16 21 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.07 2.02 6.27 -51.93 -0.33 1.70 16 23 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 24 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 25 H 0.33 6.91 7.73 -39.29 -0.30 6.61 16 26 H 0.05 1.07 6.98 -51.93 -0.36 0.71 16 27 H 0.07 1.11 2.67 -51.93 -0.14 0.97 16 28 H 0.06 1.36 6.52 -51.93 -0.34 1.03 16 29 H 0.06 1.13 8.12 -51.93 -0.42 0.71 16 30 H 0.06 1.19 6.38 -51.93 -0.33 0.86 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.72 6.63 -51.93 -0.34 0.38 16 33 H 0.09 1.36 4.25 -51.93 -0.22 1.14 16 34 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.05 0.63 7.47 -51.93 -0.39 0.24 16 37 H 0.08 1.20 4.83 -51.93 -0.25 0.95 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.94 7.58 -51.93 -0.39 0.55 16 40 H 0.06 0.90 6.97 -51.93 -0.36 0.54 16 LS Contribution 279.36 15.07 4.21 4.21 Total: -1.00 -27.05 279.36 -8.10 -35.15 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -6.49 Total: 6.56 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: -0.88 Total: -22.51 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: 0.07 Total: -39.65 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -27.05 -8.10 -35.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306783912.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.348 kcal (2) G-P(sol) polarization free energy of solvation -27.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds