Wall clock time and date at job start Mon Mar 30 2020 02:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47806 * 2 1 4 4 C 1.50706 * 109.47116 * 119.99679 * 2 1 3 5 5 H 1.08005 * 119.99742 * 119.99178 * 4 2 1 6 6 C 1.37874 * 120.00057 * 300.00343 * 4 2 1 7 7 N 1.31512 * 119.99886 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00080 * 179.97438 * 6 4 2 9 9 H 1.48493 * 109.47152 * 89.99431 * 8 6 4 10 10 H 1.48501 * 109.46844 * 209.99889 * 8 6 4 11 11 H 1.48501 * 109.46811 * 329.99282 * 8 6 4 12 12 N 1.46900 * 109.47324 * 239.99474 * 2 1 3 13 13 C 1.46903 * 111.00041 * 145.68900 * 12 2 1 14 14 C 1.53001 * 108.85286 * 54.22653 * 13 12 2 15 15 C 1.54067 * 108.87745 * 295.66491 * 13 12 2 16 16 C 1.54000 * 112.85419 * 197.40952 * 15 13 12 17 17 C 1.50478 * 112.54698 * 318.44312 * 16 15 13 18 18 C 1.54241 * 108.52802 * 94.06901 * 17 16 15 19 19 C 1.45541 * 112.40244 * 280.02006 * 18 17 16 20 20 C 1.50472 * 108.87532 * 172.78531 * 13 12 2 21 21 H 1.08998 * 109.47606 * 186.33448 * 1 2 3 22 22 H 1.09001 * 109.46958 * 306.34358 * 1 2 3 23 23 H 1.09004 * 109.47173 * 66.33492 * 1 2 3 24 24 H 0.96999 * 119.99889 * 180.02562 * 7 6 4 25 25 H 1.00900 * 111.00455 * 269.64328 * 12 2 1 26 26 H 1.09005 * 109.47152 * 46.03185 * 14 13 12 27 27 H 1.08998 * 109.47289 * 166.02858 * 14 13 12 28 28 H 1.08997 * 109.46784 * 286.02865 * 14 13 12 29 29 H 1.08997 * 108.81413 * 318.37022 * 15 13 12 30 30 H 1.08998 * 108.81161 * 76.64464 * 15 13 12 31 31 H 1.08999 * 108.91356 * 197.60829 * 16 15 13 32 32 H 1.08991 * 108.71400 * 79.13811 * 16 15 13 33 33 H 1.08999 * 109.62854 * 334.35562 * 17 16 15 34 34 H 1.09005 * 109.62204 * 213.78256 * 17 16 15 35 35 H 1.09001 * 108.89524 * 159.26566 * 18 17 16 36 36 H 1.08998 * 108.89165 * 40.77694 * 18 17 16 37 37 H 1.09001 * 108.89294 * 301.18460 * 19 18 17 38 38 H 1.09000 * 108.89395 * 182.69539 * 19 18 17 39 39 H 1.08999 * 109.63265 * 334.64388 * 20 13 12 40 40 H 1.09001 * 109.63473 * 95.22531 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6531 -1.5886 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3212 -1.1202 4.0080 9 1 3.6295 -0.5458 4.4124 10 1 1.3429 -0.9491 5.1120 11 1 2.4856 -2.5661 3.7121 12 7 2.0196 -0.6926 -1.1994 13 6 3.2632 -0.0825 -1.6887 14 6 4.2788 -0.0447 -0.5451 15 6 2.9665 1.3604 -2.1400 16 6 4.0665 1.9413 -3.0479 17 6 5.4508 1.5901 -2.5741 18 6 5.9126 0.3162 -3.3109 19 6 5.3558 -0.8950 -2.7269 20 6 3.8157 -0.9300 -2.8026 21 1 -0.3634 -1.0213 0.1134 22 1 -0.3633 0.6090 0.8278 23 1 -0.3634 0.4125 -0.9413 24 1 0.7094 1.1618 3.4843 25 1 2.1457 -1.6778 -1.0219 26 1 4.2926 -1.0102 -0.0393 27 1 5.2695 0.1697 -0.9458 28 1 3.9978 0.7334 0.1647 29 1 2.0203 1.3721 -2.6808 30 1 2.8719 1.9924 -1.2569 31 1 3.9671 3.0264 -3.0733 32 1 3.9295 1.5514 -4.0564 33 1 5.4345 1.4061 -1.4999 34 1 6.1333 2.4102 -2.7976 35 1 7.0004 0.2598 -3.2705 36 1 5.6029 0.3799 -4.3540 37 1 5.6593 -0.9547 -1.6817 38 1 5.7551 -1.7589 -3.2583 39 1 3.4667 -1.9564 -2.6895 40 1 3.4871 -0.5323 -3.7629 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306783912.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:47 Heat of formation + Delta-G solvation = -8.376536 kcal Electronic energy + Delta-G solvation = -17166.001688 eV Core-core repulsion = 14787.213821 eV Total energy + Delta-G solvation = -2378.787867 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.16799 -37.24266 -34.59605 -33.24232 -32.17206 -28.92301 -28.71096 -27.04089 -25.82302 -23.80606 -21.88557 -20.80389 -19.01830 -18.46488 -17.21639 -16.82449 -16.16363 -15.67163 -15.00205 -14.92129 -14.67717 -13.95504 -13.77826 -13.50229 -13.38013 -13.25432 -12.98441 -12.88898 -12.69592 -12.54634 -12.22422 -12.12082 -12.03299 -11.66105 -11.23411 -11.16955 -11.03749 -10.95145 -10.75223 -10.51250 -10.44568 -8.94090 -8.03987 -6.20569 1.36584 1.38603 1.47196 2.41023 3.18707 3.62794 3.85965 3.95734 4.22880 4.25673 4.36990 4.45305 4.51566 4.58351 4.78298 4.83916 4.91439 4.94399 5.06596 5.10602 5.17095 5.21879 5.23828 5.31324 5.35220 5.39654 5.45870 5.48208 5.51718 5.57135 5.61009 5.72555 5.75430 5.84285 6.09833 6.23519 6.49559 6.92279 7.11120 7.48516 8.95703 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.033710 B = 0.008563 C = 0.007947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.404370 B = 3269.077554 C = 3522.579012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.215 3.785 3 H 0.009 0.991 4 C -0.534 4.534 5 H 0.051 0.949 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.945 3.055 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.270 1.270 12 N -0.686 5.686 13 C 0.123 3.877 14 C -0.177 4.177 15 C -0.097 4.097 16 C -0.105 4.105 17 C -0.143 4.143 18 C -0.109 4.109 19 C -0.135 4.135 20 C -0.097 4.097 21 H 0.021 0.979 22 H 0.050 0.950 23 H 0.023 0.977 24 H 0.259 0.741 25 H 0.327 0.673 26 H 0.035 0.965 27 H 0.101 0.899 28 H 0.022 0.978 29 H 0.049 0.951 30 H 0.027 0.973 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.335 -0.790 -10.880 14.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.106 3.894 3 H 0.027 0.973 4 C -0.573 4.573 5 H 0.069 0.931 6 C -0.184 4.184 7 N -0.557 5.557 8 Si 0.772 3.228 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.194 1.194 12 N -0.315 5.315 13 C 0.032 3.968 14 C -0.235 4.235 15 C -0.135 4.135 16 C -0.143 4.143 17 C -0.180 4.180 18 C -0.146 4.146 19 C -0.173 4.173 20 C -0.135 4.135 21 H 0.040 0.960 22 H 0.069 0.931 23 H 0.042 0.958 24 H 0.068 0.932 25 H 0.144 0.856 26 H 0.054 0.946 27 H 0.119 0.881 28 H 0.041 0.959 29 H 0.068 0.932 30 H 0.046 0.954 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.825 -0.321 -11.185 14.251 hybrid contribution 0.316 -0.527 2.101 2.189 sum 9.141 -0.848 -9.083 12.915 Atomic orbital electron populations 1.21561 0.98661 0.98807 0.98222 1.18897 0.91596 0.93215 0.85695 0.97307 1.22053 1.30575 1.12147 0.92540 0.93083 1.25640 0.95402 0.95718 1.01634 1.70030 1.37822 1.24163 1.23698 0.85751 0.77955 0.79230 0.79870 1.20530 1.21144 1.19441 1.61071 1.29817 1.06273 1.34369 1.20526 0.88208 0.94044 0.94018 1.23284 1.01423 1.00356 0.98436 1.21909 0.98671 0.94636 0.98318 1.21228 0.94155 0.99907 0.99020 1.21815 0.96129 0.98282 1.01753 1.20423 1.00564 0.93803 0.99831 1.20778 0.94728 0.98972 1.02775 1.21329 0.95537 0.98837 0.97764 0.95991 0.93089 0.95808 0.93185 0.85559 0.94558 0.88094 0.95909 0.93185 0.95406 0.92266 0.91189 0.90970 0.90950 0.91226 0.91568 0.90960 0.91231 0.92226 0.91256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.83 9.20 71.98 0.66 -5.16 16 2 C 0.21 10.89 1.89 44.17 0.08 10.97 16 3 H 0.01 0.51 5.34 -2.39 -0.01 0.50 16 4 C -0.53 -28.86 6.77 25.60 0.17 -28.69 16 5 H 0.05 2.73 6.79 -2.91 -0.02 2.71 16 6 C 0.02 0.84 5.30 84.65 0.45 1.28 16 7 N -0.92 -53.50 11.39 21.45 0.24 -53.26 16 8 Si 0.95 44.03 29.54 68.60 2.03 46.06 16 9 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 10 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 11 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 12 N -0.69 -29.11 5.89 -454.34 -2.68 -31.79 16 13 C 0.12 4.40 0.69 3.07 0.00 4.40 16 14 C -0.18 -6.69 4.97 71.98 0.36 -6.34 16 15 C -0.10 -3.43 4.31 31.29 0.13 -3.29 16 16 C -0.11 -2.78 5.31 30.12 0.16 -2.62 16 17 C -0.14 -3.41 5.56 30.20 0.17 -3.24 16 18 C -0.11 -2.24 5.21 28.74 0.15 -2.09 16 19 C -0.14 -3.18 5.14 28.74 0.15 -3.03 16 20 C -0.10 -2.76 5.16 30.20 0.16 -2.60 16 21 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 22 H 0.05 2.84 6.27 -2.39 -0.01 2.82 16 23 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 24 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 25 H 0.33 13.82 7.73 -89.69 -0.69 13.12 16 26 H 0.04 1.45 6.98 -2.38 -0.02 1.44 16 27 H 0.10 3.15 2.67 -2.39 -0.01 3.15 16 28 H 0.02 1.01 6.52 -2.39 -0.02 0.99 16 29 H 0.05 1.84 8.12 -2.39 -0.02 1.82 16 30 H 0.03 1.13 6.38 -2.39 -0.02 1.12 16 31 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.07 1.65 6.63 -2.39 -0.02 1.64 16 33 H 0.07 2.03 4.25 -2.39 -0.01 2.02 16 34 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 35 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.07 1.25 7.47 -2.39 -0.02 1.23 16 37 H 0.07 1.88 4.83 -2.39 -0.01 1.86 16 38 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.06 1.72 7.58 -2.39 -0.02 1.71 16 40 H 0.07 1.87 6.97 -2.39 -0.02 1.85 16 Total: -1.00 -58.74 279.36 2.57 -56.18 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: 0.33 Total: 23.23 kcal Atomic # 6 Polarization: -43.07 SS G_CDS: 2.64 Total: -40.42 kcal Atomic # 7 Polarization: -82.61 SS G_CDS: -2.43 Total: -85.05 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -58.74 2.57 -56.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306783912.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.799 kcal (2) G-P(sol) polarization free energy of solvation -58.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds