Wall clock time and date at job start Mon Mar 30 2020 03:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47474 * 270.00343 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.50699 * 109.46817 * 179.97438 * 9 7 2 11 11 C 1.38171 * 119.96116 * 264.72486 * 10 9 7 12 12 C 1.38126 * 120.16138 * 179.76768 * 11 10 9 13 13 C 1.39072 * 120.07768 * 0.50911 * 12 11 10 14 14 S 1.76197 * 120.04068 * 179.72430 * 13 12 11 15 15 C 1.38793 * 119.91925 * 359.74626 * 13 12 11 16 16 C 1.38837 * 119.84254 * 359.97438 * 15 13 12 17 17 S 1.76204 * 120.04152 * 180.02562 * 16 15 13 18 18 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 19 19 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 20 20 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 21 21 H 1.07998 * 119.92118 * 0.02562 * 11 10 9 22 22 H 1.08003 * 119.96645 * 180.25461 * 12 11 10 23 23 H 1.34497 * 103.00034 * 270.02267 * 14 13 12 24 24 H 1.07998 * 120.08094 * 180.02562 * 15 13 12 25 25 H 1.34503 * 102.99992 * 269.97873 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 6 2.2303 -3.6446 -0.0027 11 6 2.5951 -4.2395 -1.1952 12 6 3.4960 -5.2865 -1.2014 13 6 4.0312 -5.7526 -0.0054 14 16 5.1748 -7.0930 -0.0138 15 6 3.6631 -5.1608 1.1948 16 6 2.7617 -4.1049 1.1967 17 16 2.2912 -3.3493 2.7174 18 1 -0.4849 0.8400 0.0004 19 1 0.6240 -2.5575 0.8880 20 1 0.6247 -2.5562 -0.8920 21 1 2.1780 -3.8823 -2.1252 22 1 3.7820 -5.7465 -2.1358 23 1 4.3783 -8.1709 0.0981 24 1 4.0774 -5.5204 2.1251 25 1 1.2172 -4.0670 3.0923 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306814114.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:29 Heat of formation + Delta-G solvation = 22.070697 kcal Electronic energy + Delta-G solvation = -11028.674790 eV Core-core repulsion = 9031.495010 eV Total energy + Delta-G solvation = -1997.179780 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 226.018 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.77571 -33.59950 -31.45339 -30.76036 -27.25398 -23.56926 -22.60139 -20.79844 -18.33672 -16.86625 -16.29159 -15.82160 -15.16271 -14.83768 -14.30779 -13.44747 -13.19619 -12.82491 -12.25124 -11.71268 -11.38876 -11.06288 -10.92652 -10.57594 -10.47298 -10.19747 -9.65983 -9.51093 -8.58424 -8.41732 -8.15941 -8.12579 -7.28654 -6.03919 -4.05710 1.21082 1.41955 1.84981 2.27542 2.87878 3.33252 3.35403 3.39894 3.45287 4.06141 4.48022 5.18377 5.28691 5.34930 5.66076 5.75171 5.97398 6.15911 6.43662 6.68612 6.74425 7.14559 7.44624 7.61969 7.90481 8.25522 8.95475 9.56808 11.06984 Molecular weight = 226.02amu Principal moments of inertia in cm(-1) A = 0.037321 B = 0.007582 C = 0.007057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.076858 B = 3692.129166 C = 3966.782084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.062 3.938 3 Si 0.895 3.105 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.495 4.495 8 H 0.057 0.943 9 C 0.040 3.960 10 C 0.038 3.962 11 C -0.140 4.140 12 C -0.048 4.048 13 C -0.147 4.147 14 S -0.135 6.135 15 C -0.024 4.024 16 C -0.125 4.125 17 S -0.099 6.099 18 H 0.262 0.738 19 H 0.045 0.955 20 H 0.030 0.970 21 H 0.133 0.867 22 H 0.129 0.871 23 H 0.064 0.936 24 H 0.135 0.865 25 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.507 -10.509 0.423 11.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.139 4.139 3 Si 0.723 3.277 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.534 4.534 8 H 0.076 0.924 9 C 0.003 3.997 10 C 0.036 3.964 11 C -0.162 4.162 12 C -0.069 4.069 13 C -0.261 4.261 14 S 0.022 5.978 15 C -0.048 4.048 16 C -0.238 4.238 17 S 0.059 5.941 18 H 0.071 0.929 19 H 0.063 0.937 20 H 0.048 0.952 21 H 0.151 0.849 22 H 0.147 0.853 23 H 0.028 0.972 24 H 0.153 0.847 25 H 0.019 0.981 Dipole moment (debyes) X Y Z Total from point charges 6.052 -10.408 1.200 12.100 hybrid contribution -1.462 -0.128 -0.615 1.592 sum 4.590 -10.536 0.585 11.508 Atomic orbital electron populations 1.69941 1.06034 1.26813 1.50614 1.24912 0.94827 0.99083 0.95079 0.86528 0.80020 0.83108 0.78043 1.20750 1.21188 1.19591 1.20781 0.92826 0.88951 1.50810 0.92426 1.18640 0.92560 0.89344 0.99107 1.21403 0.92084 0.92065 0.90893 1.21205 0.99488 0.96884 0.98618 1.21642 0.93354 0.95119 0.96772 1.20914 1.06578 1.02704 0.95890 1.85835 1.12993 1.00934 1.98034 1.21921 0.92987 0.92635 0.97222 1.21209 1.04795 1.01491 0.96353 1.86051 1.38412 1.47837 1.21824 0.92875 0.93673 0.95171 0.84888 0.85280 0.97153 0.84726 0.98114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.73 13.29 55.43 0.74 -24.99 15 2 C 0.06 1.71 5.46 -17.82 -0.10 1.62 15 3 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 15 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 15 6 H -0.27 -6.40 7.11 56.52 0.40 -6.00 15 7 C -0.50 -13.33 9.08 -34.44 -0.31 -13.64 15 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 15 9 C 0.04 0.99 4.56 -29.03 -0.13 0.86 15 10 C 0.04 0.79 5.09 -104.35 -0.53 0.26 15 11 C -0.14 -2.50 9.66 -39.65 -0.38 -2.88 15 12 C -0.05 -0.74 9.79 -39.31 -0.38 -1.13 15 13 C -0.15 -2.29 6.11 -39.07 -0.24 -2.53 15 14 S -0.13 -1.78 25.77 -107.50 -2.77 -4.55 15 15 C -0.02 -0.40 9.53 -39.15 -0.37 -0.77 15 16 C -0.12 -2.40 6.11 -39.07 -0.24 -2.64 15 17 S -0.10 -1.90 24.06 -107.50 -2.59 -4.48 15 18 H 0.26 7.15 8.31 -40.82 -0.34 6.81 15 19 H 0.05 1.17 7.01 -51.93 -0.36 0.81 15 20 H 0.03 0.77 8.05 -51.93 -0.42 0.35 15 21 H 0.13 2.21 8.06 -52.49 -0.42 1.78 15 22 H 0.13 1.64 8.06 -52.48 -0.42 1.21 15 23 H 0.06 0.77 9.07 97.61 0.89 1.66 15 24 H 0.13 1.96 8.06 -52.49 -0.42 1.53 15 25 H 0.05 0.96 9.07 97.61 0.89 1.85 15 LS Contribution 252.79 15.07 3.81 3.81 Total: -1.00 -27.84 252.79 -8.34 -36.19 By element: Atomic # 1 Polarization: -1.56 SS G_CDS: 0.18 Total: -1.38 kcal Atomic # 6 Polarization: -18.16 SS G_CDS: -2.69 Total: -20.85 kcal Atomic # 7 Polarization: -25.73 SS G_CDS: 0.74 Total: -24.99 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -5.36 Total: -9.03 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -27.84 -8.34 -36.19 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306814114.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.259 kcal (2) G-P(sol) polarization free energy of solvation -27.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds