Wall clock time and date at job start Mon Mar 30 2020 03:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47474 * 270.00343 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.50699 * 109.46817 * 179.97438 * 9 7 2 11 11 C 1.38171 * 119.96116 * 264.72486 * 10 9 7 12 12 C 1.38126 * 120.16138 * 179.76768 * 11 10 9 13 13 C 1.39072 * 120.07768 * 0.50911 * 12 11 10 14 14 S 1.76197 * 120.04068 * 179.72430 * 13 12 11 15 15 C 1.38793 * 119.91925 * 359.74626 * 13 12 11 16 16 C 1.38837 * 119.84254 * 359.97438 * 15 13 12 17 17 S 1.76204 * 120.04152 * 180.02562 * 16 15 13 18 18 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 19 19 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 20 20 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 21 21 H 1.07998 * 119.92118 * 0.02562 * 11 10 9 22 22 H 1.08003 * 119.96645 * 180.25461 * 12 11 10 23 23 H 1.34497 * 103.00034 * 270.02267 * 14 13 12 24 24 H 1.07998 * 120.08094 * 180.02562 * 15 13 12 25 25 H 1.34503 * 102.99992 * 269.97873 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 6 2.2303 -3.6446 -0.0027 11 6 2.5951 -4.2395 -1.1952 12 6 3.4960 -5.2865 -1.2014 13 6 4.0312 -5.7526 -0.0054 14 16 5.1748 -7.0930 -0.0138 15 6 3.6631 -5.1608 1.1948 16 6 2.7617 -4.1049 1.1967 17 16 2.2912 -3.3493 2.7174 18 1 -0.4849 0.8400 0.0004 19 1 0.6240 -2.5575 0.8880 20 1 0.6247 -2.5562 -0.8920 21 1 2.1780 -3.8823 -2.1252 22 1 3.7820 -5.7465 -2.1358 23 1 4.3783 -8.1709 0.0981 24 1 4.0774 -5.5204 2.1251 25 1 1.2172 -4.0670 3.0923 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306814114.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:28 Heat of formation + Delta-G solvation = 7.201361 kcal Electronic energy + Delta-G solvation = -11029.319573 eV Core-core repulsion = 9031.495010 eV Total energy + Delta-G solvation = -1997.824563 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 226.018 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.16957 -35.49020 -33.20753 -32.10289 -29.05353 -25.42366 -23.95333 -22.36807 -19.60837 -18.49191 -18.07321 -17.17448 -16.58859 -16.49904 -15.90024 -14.85073 -14.63325 -14.36666 -13.97485 -13.44686 -13.11646 -12.73149 -12.55017 -12.31587 -12.02654 -11.64581 -11.52961 -11.31248 -10.52251 -9.93491 -9.63068 -9.16136 -8.81730 -8.13543 -6.21808 -0.12911 0.10981 0.61211 0.86340 1.44786 1.46380 1.57255 1.74309 1.98021 2.45513 2.71545 3.20960 3.88746 4.07757 4.22049 4.38155 4.56063 4.84446 5.11249 5.12851 5.29654 5.38328 5.75072 5.79316 5.81165 6.21400 6.85915 7.44337 8.97288 Molecular weight = 226.02amu Principal moments of inertia in cm(-1) A = 0.037321 B = 0.007582 C = 0.007057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.076858 B = 3692.129166 C = 3966.782084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.012 3.988 3 Si 0.956 3.044 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.502 4.502 8 H 0.051 0.949 9 C 0.051 3.949 10 C 0.005 3.995 11 C -0.145 4.145 12 C -0.036 4.036 13 C -0.146 4.146 14 S -0.112 6.112 15 C -0.022 4.022 16 C -0.134 4.134 17 S -0.125 6.125 18 H 0.263 0.737 19 H 0.022 0.978 20 H 0.009 0.991 21 H 0.138 0.862 22 H 0.164 0.836 23 H 0.080 0.920 24 H 0.156 0.844 25 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.327 -11.797 -0.056 13.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.186 4.186 3 Si 0.781 3.219 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.540 4.540 8 H 0.069 0.931 9 C 0.013 3.987 10 C 0.002 3.998 11 C -0.166 4.166 12 C -0.056 4.056 13 C -0.259 4.259 14 S 0.045 5.955 15 C -0.045 4.045 16 C -0.248 4.248 17 S 0.032 5.968 18 H 0.072 0.928 19 H 0.040 0.960 20 H 0.027 0.973 21 H 0.156 0.844 22 H 0.182 0.818 23 H 0.044 0.956 24 H 0.173 0.827 25 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 7.881 -11.703 0.720 14.128 hybrid contribution -1.984 0.106 -0.477 2.043 sum 5.897 -11.597 0.243 13.012 Atomic orbital electron populations 1.70054 1.07456 1.27622 1.51884 1.25704 0.95576 1.02444 0.94876 0.85576 0.78781 0.79156 0.78362 1.19831 1.20886 1.19198 1.21029 0.92612 0.90365 1.49972 0.93082 1.18323 0.92886 0.90590 0.96855 1.21100 0.93252 0.92521 0.92893 1.21289 1.00113 0.97498 0.97747 1.21971 0.91663 0.93686 0.98272 1.21221 1.05992 1.03269 0.95437 1.85818 1.11681 1.00054 1.97933 1.22125 0.92058 0.91613 0.98708 1.21248 1.05783 1.02526 0.95256 1.86023 1.39104 1.49273 1.22387 0.92814 0.96012 0.97294 0.84374 0.81831 0.95554 0.82683 0.96803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.72 13.29 21.45 0.28 -54.43 15 2 C 0.01 0.67 5.46 84.66 0.46 1.13 15 3 Si 0.96 43.94 29.54 68.60 2.03 45.97 15 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 15 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 15 6 H -0.27 -12.02 7.11 99.48 0.71 -11.32 15 7 C -0.50 -27.56 9.08 25.60 0.23 -27.32 15 8 H 0.05 2.81 7.74 -2.91 -0.02 2.79 15 9 C 0.05 2.58 4.56 29.10 0.13 2.71 15 10 C 0.01 0.21 5.09 -19.69 -0.10 0.11 15 11 C -0.15 -5.02 9.66 22.23 0.21 -4.81 15 12 C -0.04 -0.99 9.79 22.44 0.22 -0.77 15 13 C -0.15 -4.08 6.11 22.60 0.14 -3.94 15 14 S -0.11 -2.49 25.77 -56.49 -1.46 -3.94 15 15 C -0.02 -0.68 9.53 22.55 0.21 -0.46 15 16 C -0.13 -5.11 6.11 22.60 0.14 -4.97 15 17 S -0.13 -4.86 24.06 -56.49 -1.36 -6.21 15 18 H 0.26 14.65 8.31 -92.71 -0.77 13.88 15 19 H 0.02 1.18 7.01 -2.39 -0.02 1.17 15 20 H 0.01 0.47 8.05 -2.39 -0.02 0.45 15 21 H 0.14 4.52 8.06 -2.91 -0.02 4.49 15 22 H 0.16 3.43 8.06 -2.91 -0.02 3.40 15 23 H 0.08 1.57 9.07 73.35 0.67 2.24 15 24 H 0.16 4.10 8.06 -2.91 -0.02 4.08 15 25 H 0.07 2.41 9.07 73.35 0.67 3.08 15 Total: -1.00 -59.87 252.79 3.70 -56.17 By element: Atomic # 1 Polarization: -1.76 SS G_CDS: 2.55 Total: 0.79 kcal Atomic # 6 Polarization: -39.98 SS G_CDS: 1.65 Total: -38.33 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: 0.28 Total: -54.43 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Atomic # 16 Polarization: -7.34 SS G_CDS: -2.81 Total: -10.16 kcal Total: -59.87 3.70 -56.17 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306814114.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.367 kcal (2) G-P(sol) polarization free energy of solvation -59.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds