Wall clock time and date at job start Mon Mar 30 2020 02:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 109.46577 * 2 1 4 4 C 1.50703 * 109.47348 * 240.00009 * 2 1 3 5 5 H 1.07998 * 119.99910 * 275.35014 * 4 2 1 6 6 C 1.37872 * 119.99743 * 95.34699 * 4 2 1 7 7 N 1.31516 * 119.99864 * 174.92559 * 6 4 2 8 8 Si 1.86800 * 120.00408 * 354.92501 * 6 4 2 9 9 H 1.48499 * 109.46796 * 94.87096 * 8 6 4 10 10 H 1.48495 * 109.47086 * 214.87113 * 8 6 4 11 11 H 1.48504 * 109.47060 * 334.87453 * 8 6 4 12 12 N 1.46899 * 109.46908 * 119.99778 * 2 1 3 13 13 C 1.51277 * 110.99634 * 177.58446 * 12 2 1 14 14 C 1.54234 * 105.37208 * 252.12436 * 13 12 2 15 15 C 1.54333 * 117.30995 * 301.60609 * 14 13 12 16 16 C 1.57141 * 105.23516 * 301.77238 * 15 14 13 17 17 C 1.54632 * 105.33912 * 130.43836 * 16 15 14 18 18 C 1.54560 * 116.47666 * 302.41291 * 17 16 15 19 19 C 1.56982 * 105.44566 * 302.25672 * 18 17 16 20 20 C 1.48430 * 111.00108 * 295.33398 * 12 2 1 21 21 H 1.08999 * 109.47285 * 305.24134 * 1 2 3 22 22 H 1.08999 * 109.46962 * 65.24640 * 1 2 3 23 23 H 1.09004 * 109.46625 * 185.23987 * 1 2 3 24 24 H 0.96996 * 120.00321 * 180.02562 * 7 6 4 25 25 H 1.08994 * 110.25848 * 11.08796 * 13 12 2 26 26 H 1.09005 * 110.25367 * 133.16909 * 13 12 2 27 27 H 1.09004 * 107.90511 * 63.65189 * 14 13 12 28 28 H 1.09002 * 107.90358 * 179.79251 * 14 13 12 29 29 H 1.08999 * 110.48435 * 182.73157 * 15 14 13 30 30 H 1.08999 * 110.06131 * 60.59689 * 15 14 13 31 31 H 1.08999 * 110.28918 * 11.43512 * 16 15 14 32 32 H 1.08999 * 110.28696 * 249.43063 * 16 15 14 33 33 H 1.08992 * 108.05023 * 64.17884 * 17 16 15 34 34 H 1.08999 * 108.04595 * 180.69039 * 17 16 15 35 35 H 1.09003 * 110.24306 * 61.23607 * 18 17 16 36 36 H 1.08998 * 110.24575 * 183.27311 * 18 17 16 37 37 H 1.08998 * 110.26452 * 249.26629 * 19 18 17 38 38 H 1.09000 * 110.25679 * 11.20584 * 19 18 17 39 39 H 1.08995 * 107.77161 * 59.17280 * 20 12 2 40 40 H 1.08994 * 107.77425 * 303.38821 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0325 -0.7104 -1.2305 5 1 2.1303 -1.7859 -1.2309 6 6 2.3672 0.0128 -2.3556 7 7 2.8991 -0.5948 -3.3936 8 14 2.0652 1.8555 -2.4056 9 1 3.3037 2.5710 -2.0067 10 1 1.6833 2.2573 -3.7833 11 1 0.9685 2.2031 -1.4666 12 7 2.0197 -0.6925 1.1995 13 6 3.5307 -0.7644 1.2050 14 6 3.8708 -2.2406 0.9153 15 6 3.3110 -3.3002 1.8878 16 6 3.8755 -2.9040 3.2997 17 6 2.6516 -2.9059 4.2448 18 6 1.4810 -1.9737 3.8582 19 6 2.1004 -0.5330 3.7854 20 6 1.6379 0.0427 2.4311 21 1 -0.3634 0.5930 0.8393 22 1 -0.3633 0.4303 -0.9332 23 1 -0.3633 -1.0234 0.0939 24 1 3.1349 -0.0860 -4.1851 25 1 3.9420 -0.1224 0.4260 26 1 3.9188 -0.4722 2.1808 27 1 3.5077 -2.4781 -0.0847 28 1 4.9564 -2.3388 0.9062 29 1 3.6569 -4.2953 1.6080 30 1 2.2216 -3.2647 1.8926 31 1 4.3231 -1.9109 3.2628 32 1 4.6107 -3.6369 3.6320 33 1 2.2683 -3.9248 4.2989 34 1 2.9934 -2.6231 5.2404 35 1 1.0760 -2.2596 2.8875 36 1 0.7018 -2.0112 4.6194 37 1 1.7255 0.0809 4.6043 38 1 3.1884 -0.5877 3.8230 39 1 0.5505 0.1126 2.4533 40 1 2.0306 1.0561 2.3489 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307068105.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:54 Heat of formation + Delta-G solvation = -20.920154 kcal Electronic energy + Delta-G solvation = -17120.599482 eV Core-core repulsion = 14741.267683 eV Total energy + Delta-G solvation = -2379.331800 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.55359 -36.72337 -34.56648 -34.09202 -32.19764 -28.68309 -28.31613 -26.79307 -25.12488 -22.88864 -21.93545 -20.33347 -20.24872 -18.99870 -16.99639 -16.51850 -15.99331 -15.50657 -15.16057 -14.93388 -14.67180 -14.48880 -14.28021 -13.64488 -13.45657 -13.00881 -12.85700 -12.61905 -12.53091 -12.28561 -12.14550 -12.05023 -11.86153 -11.80807 -11.43175 -11.31141 -11.17753 -10.94344 -10.83558 -10.64208 -10.50011 -8.93574 -8.25200 -6.25381 1.27918 1.32509 1.42380 2.33282 3.01865 3.34957 4.00526 4.05939 4.12320 4.33598 4.40123 4.41667 4.45845 4.56175 4.59602 4.67811 4.83137 4.88483 4.94270 4.97270 5.01191 5.03566 5.07857 5.14390 5.17449 5.24372 5.36053 5.44443 5.49217 5.51924 5.65612 5.67718 5.70093 5.73599 5.88932 6.19822 6.33086 6.76443 6.84459 7.39701 8.91203 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.034525 B = 0.009426 C = 0.008259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.810910 B = 2969.822882 C = 3389.352754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.174 3.826 3 H -0.009 1.009 4 C -0.483 4.483 5 H 0.043 0.957 6 C 0.013 3.987 7 N -0.946 5.946 8 Si 0.927 3.073 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.245 1.245 12 N -0.496 5.496 13 C 0.058 3.942 14 C -0.098 4.098 15 C -0.103 4.103 16 C -0.115 4.115 17 C -0.113 4.113 18 C -0.115 4.115 19 C -0.110 4.110 20 C 0.029 3.971 21 H 0.048 0.952 22 H 0.037 0.963 23 H 0.050 0.950 24 H 0.263 0.737 25 H 0.023 0.977 26 H 0.077 0.923 27 H 0.024 0.976 28 H 0.038 0.962 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.050 0.950 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.758 -0.129 16.085 16.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.066 3.934 3 H 0.008 0.992 4 C -0.522 4.522 5 H 0.062 0.938 6 C -0.184 4.184 7 N -0.587 5.587 8 Si 0.752 3.248 9 H -0.205 1.205 10 H -0.213 1.213 11 H -0.168 1.168 12 N -0.221 5.221 13 C -0.070 4.070 14 C -0.136 4.136 15 C -0.140 4.140 16 C -0.153 4.153 17 C -0.151 4.151 18 C -0.152 4.152 19 C -0.147 4.147 20 C -0.099 4.099 21 H 0.067 0.933 22 H 0.056 0.944 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.042 0.958 26 H 0.095 0.905 27 H 0.043 0.957 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges -0.951 -0.611 15.895 15.936 hybrid contribution 0.424 1.615 -1.128 2.015 sum -0.527 1.004 14.767 14.810 Atomic orbital electron populations 1.21844 0.96437 1.00769 0.99339 1.19762 0.93324 0.91221 0.89107 0.99169 1.21024 1.41081 0.94261 0.95805 0.93831 1.25744 0.94737 1.02262 0.95613 1.70044 1.44493 1.37912 1.06273 0.86042 0.79509 0.81512 0.77730 1.20455 1.21254 1.16804 1.65341 1.08624 1.47549 1.00536 1.23077 0.88983 0.96116 0.98787 1.21780 0.97910 0.94704 0.99241 1.22445 1.00918 0.95973 0.94661 1.22715 0.96958 1.01189 0.94389 1.22032 0.95112 0.99313 0.98623 1.22602 0.96920 0.94123 1.01589 1.22708 1.00845 0.97074 0.94092 1.22806 1.00611 0.94447 0.92071 0.93271 0.94354 0.93062 0.92836 0.95822 0.90475 0.95668 0.94337 0.92680 0.91499 0.91823 0.91072 0.93124 0.92242 0.91789 0.90983 0.89672 0.91231 0.91969 0.97873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.23 8.62 71.98 0.62 -4.61 16 2 C 0.17 8.06 1.36 44.17 0.06 8.12 16 3 H -0.01 -0.44 5.53 -2.39 -0.01 -0.46 16 4 C -0.48 -27.01 7.33 25.60 0.19 -26.82 16 5 H 0.04 2.75 6.62 -2.91 -0.02 2.73 16 6 C 0.01 0.78 5.47 84.65 0.46 1.24 16 7 N -0.95 -59.00 13.96 21.45 0.30 -58.70 16 8 Si 0.93 44.49 26.58 68.60 1.82 46.31 16 9 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 10 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 11 H -0.24 -10.89 6.22 99.48 0.62 -10.28 16 12 N -0.50 -19.65 3.61 -853.92 -3.09 -22.74 16 13 C 0.06 2.25 4.90 85.86 0.42 2.67 16 14 C -0.10 -3.79 4.99 31.46 0.16 -3.63 16 15 C -0.10 -3.23 6.02 32.50 0.20 -3.04 16 16 C -0.12 -2.84 5.82 32.61 0.19 -2.65 16 17 C -0.11 -2.49 4.87 31.68 0.15 -2.33 16 18 C -0.11 -2.76 5.93 32.52 0.19 -2.57 16 19 C -0.11 -2.67 5.84 32.42 0.19 -2.48 16 20 C 0.03 0.93 3.88 86.43 0.34 1.26 16 21 H 0.05 1.74 6.74 -2.39 -0.02 1.73 16 22 H 0.04 1.63 7.35 -2.39 -0.02 1.61 16 23 H 0.05 2.12 8.14 -2.38 -0.02 2.10 16 24 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 25 H 0.02 1.07 7.31 -2.39 -0.02 1.06 16 26 H 0.08 2.53 4.45 -2.38 -0.01 2.52 16 27 H 0.02 1.20 6.05 -2.39 -0.01 1.18 16 28 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.05 1.64 8.14 -2.39 -0.02 1.63 16 30 H 0.07 2.29 5.60 -2.39 -0.01 2.28 16 31 H 0.06 1.61 4.59 -2.39 -0.01 1.60 16 32 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.06 1.91 5.44 -2.39 -0.01 1.90 16 36 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.07 1.68 4.51 -2.39 -0.01 1.67 16 39 H 0.06 1.94 6.41 -2.39 -0.02 1.92 16 40 H 0.00 0.10 8.08 -2.39 -0.02 0.08 16 Total: -1.00 -62.34 281.74 3.12 -59.22 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: 0.91 Total: 10.73 kcal Atomic # 6 Polarization: -37.99 SS G_CDS: 3.17 Total: -34.82 kcal Atomic # 7 Polarization: -78.65 SS G_CDS: -2.79 Total: -81.44 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.82 Total: 46.31 kcal Total: -62.34 3.12 -59.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307068105.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.297 kcal (2) G-P(sol) polarization free energy of solvation -62.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds