Wall clock time and date at job start Mon Mar 30 2020 02:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46983 * 2 1 4 4 C 1.50698 * 109.47182 * 119.99767 * 2 1 3 5 5 H 1.08001 * 120.00054 * 84.59849 * 4 2 1 6 6 C 1.37878 * 119.99979 * 264.59811 * 4 2 1 7 7 N 1.31515 * 120.00032 * 178.92068 * 6 4 2 8 8 Si 1.86801 * 120.00016 * 358.92461 * 6 4 2 9 9 H 1.48501 * 109.46980 * 266.27838 * 8 6 4 10 10 H 1.48501 * 109.47570 * 146.27910 * 8 6 4 11 11 H 1.48500 * 109.47383 * 26.27198 * 8 6 4 12 12 N 1.46899 * 109.47072 * 239.99716 * 2 1 3 13 13 C 1.48693 * 110.99934 * 196.26480 * 12 2 1 14 14 C 1.57061 * 105.04148 * 171.00741 * 13 12 2 15 15 C 1.54550 * 105.29233 * 130.95481 * 14 13 12 16 16 C 1.54623 * 116.68350 * 302.19125 * 15 14 13 17 17 C 1.57120 * 105.21948 * 302.28698 * 16 15 14 18 18 C 1.54613 * 105.22360 * 130.69342 * 17 16 15 19 19 C 1.54547 * 116.69198 * 302.27531 * 18 17 16 20 20 C 1.48698 * 110.99856 * 61.48556 * 12 2 1 21 21 H 1.08999 * 109.46874 * 173.36284 * 1 2 3 22 22 H 1.09004 * 109.47069 * 293.36041 * 1 2 3 23 23 H 1.09000 * 109.47084 * 53.36072 * 1 2 3 24 24 H 0.97006 * 119.99794 * 180.02562 * 7 6 4 25 25 H 1.08999 * 110.32068 * 289.88415 * 13 12 2 26 26 H 1.08999 * 110.31718 * 52.12851 * 13 12 2 27 27 H 1.08993 * 110.27376 * 12.01093 * 14 13 12 28 28 H 1.09008 * 110.39367 * 249.95700 * 14 13 12 29 29 H 1.09009 * 108.00608 * 180.37731 * 15 14 13 30 30 H 1.08998 * 108.01036 * 64.01380 * 15 14 13 31 31 H 1.09003 * 110.28529 * 183.35947 * 16 15 14 32 32 H 1.09005 * 110.40789 * 61.27879 * 16 15 14 33 33 H 1.09006 * 110.28772 * 11.77188 * 17 16 15 34 34 H 1.08997 * 110.41716 * 249.68853 * 17 16 15 35 35 H 1.09000 * 108.01053 * 180.45696 * 18 17 16 36 36 H 1.08998 * 108.00771 * 64.09472 * 18 17 16 37 37 H 1.09000 * 110.27396 * 183.24156 * 19 18 17 38 38 H 1.09002 * 110.39665 * 61.19281 * 19 18 17 39 39 H 1.08998 * 110.31785 * 191.31104 * 20 12 2 40 40 H 1.08995 * 110.32370 * 313.55530 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.1294 -1.7860 1.2313 6 6 2.3682 0.0130 2.3552 7 7 2.7864 -0.6086 3.4362 8 14 2.2290 1.8757 2.3438 9 1 3.5391 2.4677 1.9719 10 1 1.8367 2.3512 3.6949 11 1 1.2006 2.2893 1.3556 12 7 2.0197 -0.6926 -1.1994 13 6 3.4537 -1.0583 -1.0554 14 6 3.7645 -1.9819 -2.2872 15 6 5.0603 -1.4119 -2.9073 16 6 5.0237 0.0679 -3.3542 17 6 3.8465 0.1566 -4.3910 18 6 2.9956 1.3649 -3.9366 19 6 2.4316 1.3153 -2.4986 20 6 1.5725 0.0022 -2.4357 21 1 -0.3633 -1.0208 -0.1188 22 1 -0.3633 0.4075 0.9435 23 1 -0.3633 0.6133 -0.8246 24 1 3.0223 -0.0997 4.2276 25 1 4.0772 -0.1648 -1.0854 26 1 3.6139 -1.6023 -0.1245 27 1 2.9488 -1.9363 -3.0086 28 1 3.9224 -3.0099 -1.9609 29 1 5.3142 -2.0200 -3.7756 30 1 5.8611 -1.5235 -2.1763 31 1 5.9661 0.3430 -3.8279 32 1 4.8264 0.7177 -2.5016 33 1 3.2508 -0.7560 -4.3655 34 1 4.2359 0.3248 -5.3950 35 1 2.1559 1.4635 -4.6246 36 1 3.6083 2.2618 -4.0275 37 1 1.8046 2.1864 -2.3085 38 1 3.2440 1.2702 -1.7732 39 1 1.7661 -0.6192 -3.3101 40 1 0.5122 0.2463 -2.3704 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307068108.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:56 Heat of formation + Delta-G solvation = 2.525172 kcal Electronic energy + Delta-G solvation = -17149.711318 eV Core-core repulsion = 14771.396184 eV Total energy + Delta-G solvation = -2378.315134 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.36241 -35.23727 -33.10840 -32.33977 -30.20909 -27.20953 -26.87325 -25.12786 -23.62024 -22.34616 -20.15087 -19.08783 -18.43653 -17.01951 -15.82519 -15.29033 -14.54624 -13.98159 -13.67260 -13.50691 -12.97325 -12.58841 -12.50783 -12.38875 -12.20283 -11.61379 -11.54495 -11.27012 -11.02080 -10.76728 -10.59936 -10.57360 -10.40091 -10.33696 -10.15636 -9.85110 -9.75213 -9.60732 -9.37628 -8.93367 -8.53821 -6.81338 -6.05337 -4.02349 3.26757 3.36663 3.39813 4.42747 4.75904 4.93476 5.09032 5.18311 5.32205 5.42781 5.44863 5.51021 5.68468 5.72368 5.88079 6.00360 6.04190 6.11184 6.17293 6.22815 6.23886 6.42490 6.42862 6.48080 6.52438 6.55488 6.62657 6.68607 6.78515 6.80876 6.97868 7.00232 7.28278 7.47269 7.70255 8.19193 8.39158 8.78240 9.04453 9.59732 11.07650 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.029186 B = 0.009784 C = 0.009136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.142899 B = 2861.231246 C = 3064.203930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.184 3.816 3 H 0.001 0.999 4 C -0.499 4.499 5 H 0.080 0.920 6 C 0.070 3.930 7 N -0.900 5.900 8 Si 0.869 3.131 9 H -0.280 1.280 10 H -0.289 1.289 11 H -0.263 1.263 12 N -0.579 5.579 13 C 0.090 3.910 14 C -0.122 4.122 15 C -0.122 4.122 16 C -0.123 4.123 17 C -0.122 4.122 18 C -0.117 4.117 19 C -0.160 4.160 20 C 0.069 3.931 21 H 0.050 0.950 22 H 0.044 0.956 23 H 0.019 0.981 24 H 0.262 0.738 25 H 0.028 0.972 26 H 0.097 0.903 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.043 0.957 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.057 0.943 35 H 0.046 0.954 36 H 0.043 0.957 37 H 0.057 0.943 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.709 2.350 -13.703 14.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.078 3.922 3 H 0.019 0.981 4 C -0.538 4.538 5 H 0.098 0.902 6 C -0.132 4.132 7 N -0.539 5.539 8 Si 0.697 3.303 9 H -0.206 1.206 10 H -0.215 1.215 11 H -0.188 1.188 12 N -0.305 5.305 13 C -0.036 4.036 14 C -0.160 4.160 15 C -0.160 4.160 16 C -0.161 4.161 17 C -0.159 4.159 18 C -0.155 4.155 19 C -0.199 4.199 20 C -0.058 4.058 21 H 0.069 0.931 22 H 0.063 0.937 23 H 0.038 0.962 24 H 0.072 0.928 25 H 0.046 0.954 26 H 0.115 0.885 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.076 0.924 38 H 0.092 0.908 39 H 0.088 0.912 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.585 1.984 -13.544 13.780 hybrid contribution 0.384 1.903 0.177 1.950 sum 1.969 3.887 -13.368 14.060 Atomic orbital electron populations 1.21982 0.98585 1.00056 0.98368 1.19572 0.91614 0.92413 0.88632 0.98142 1.20983 1.42436 0.95733 0.94638 0.90225 1.24992 0.94793 0.97797 0.95571 1.69900 1.45361 1.35564 1.03044 0.86961 0.78841 0.87155 0.77317 1.20647 1.21497 1.18761 1.60381 1.16941 1.51468 1.01674 1.23082 0.86145 0.96567 0.97846 1.22816 0.96130 0.98693 0.98326 1.22142 0.98801 0.95513 0.99521 1.22761 0.97429 0.96910 0.98964 1.22754 0.96932 0.98739 0.97447 1.22080 0.98638 0.97789 0.97002 1.23392 1.00533 0.99948 0.95994 1.23311 0.97932 0.91442 0.93122 0.93063 0.93739 0.96191 0.92783 0.95434 0.88496 0.91153 0.91928 0.93787 0.93231 0.92431 0.90885 0.90779 0.92379 0.93490 0.93841 0.92437 0.90829 0.91220 0.91156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 8.84 37.16 0.33 -2.53 16 2 C 0.18 4.31 1.61 -68.86 -0.11 4.20 16 3 H 0.00 0.02 4.24 -51.93 -0.22 -0.20 16 4 C -0.50 -13.66 7.13 -34.44 -0.25 -13.91 16 5 H 0.08 2.40 7.56 -52.49 -0.40 2.01 16 6 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 7 N -0.90 -27.16 13.96 55.43 0.77 -26.38 16 8 Si 0.87 21.56 27.12 -169.99 -4.61 16.95 16 9 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 10 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 11 H -0.26 -6.29 6.56 56.52 0.37 -5.92 16 12 N -0.58 -11.75 3.98 -219.59 -0.87 -12.62 16 13 C 0.09 1.77 4.92 -0.63 0.00 1.77 16 14 C -0.12 -1.94 5.92 -23.72 -0.14 -2.08 16 15 C -0.12 -1.69 4.84 -25.06 -0.12 -1.81 16 16 C -0.12 -1.65 5.82 -23.64 -0.14 -1.79 16 17 C -0.12 -1.51 5.83 -23.65 -0.14 -1.65 16 18 C -0.12 -1.55 4.84 -25.07 -0.12 -1.67 16 19 C -0.16 -2.58 4.93 -23.72 -0.12 -2.70 16 20 C 0.07 1.17 5.47 -0.63 0.00 1.17 16 21 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 22 H 0.04 0.99 8.10 -51.93 -0.42 0.57 16 23 H 0.02 0.37 6.52 -51.93 -0.34 0.03 16 24 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 25 H 0.03 0.55 4.45 -51.93 -0.23 0.32 16 26 H 0.10 2.23 6.18 -51.93 -0.32 1.91 16 27 H 0.07 1.09 4.57 -51.93 -0.24 0.86 16 28 H 0.06 0.98 8.14 -51.92 -0.42 0.55 16 29 H 0.04 0.55 8.14 -51.92 -0.42 0.12 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.07 1.11 4.55 -51.93 -0.24 0.88 16 33 H 0.07 0.95 4.53 -51.93 -0.24 0.72 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.07 1.35 4.26 -51.93 -0.22 1.13 16 39 H 0.07 1.07 4.45 -51.93 -0.23 0.84 16 40 H 0.07 1.19 6.01 -51.93 -0.31 0.87 16 LS Contribution 278.47 15.07 4.20 4.20 Total: -1.00 -28.37 278.47 -7.79 -36.16 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -6.37 Total: 0.79 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: -0.91 Total: -19.10 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: -0.10 Total: -39.00 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.61 Total: 16.95 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -28.37 -7.79 -36.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307068108.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.689 kcal (2) G-P(sol) polarization free energy of solvation -28.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds