Wall clock time and date at job start Mon Mar 30 2020 03:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99440 * 2 1 4 4 H 1.48497 * 109.47263 * 269.99966 * 3 2 1 5 5 H 1.48492 * 109.47282 * 30.00349 * 3 2 1 6 6 H 1.48503 * 109.46759 * 150.00164 * 3 2 1 7 7 C 1.37874 * 120.00501 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99761 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00158 * 179.97438 * 7 2 1 10 10 C 1.50700 * 109.46914 * 180.02562 * 9 7 2 11 11 C 1.38279 * 119.89719 * 270.02316 * 10 9 7 12 12 C 1.38273 * 120.20888 * 179.70381 * 11 10 9 13 13 C 1.38707 * 119.99305 * 0.55670 * 12 11 10 14 14 S 1.76199 * 120.10089 * 179.72210 * 13 12 11 15 15 C 1.39579 * 119.79482 * 359.44582 * 13 12 11 16 16 S 1.76207 * 120.10361 * 180.25722 * 15 13 12 17 17 C 1.38271 * 119.89398 * 90.00851 * 10 9 7 18 18 H 0.97001 * 120.00914 * 359.97438 * 1 2 3 19 19 H 1.09000 * 109.46827 * 60.00621 * 9 7 2 20 20 H 1.08998 * 109.47206 * 300.00651 * 9 7 2 21 21 H 1.07997 * 119.89713 * 359.97438 * 11 10 9 22 22 H 1.07998 * 120.00285 * 180.27579 * 12 11 10 23 23 H 1.34496 * 103.00166 * 269.72189 * 14 13 12 24 24 H 1.34491 * 103.00266 * 89.99786 * 16 15 13 25 25 H 1.08004 * 119.99683 * 0.03470 * 17 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.4964 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1939 -0.0011 10 6 4.0140 -2.6147 -0.0023 11 6 4.2437 -3.2655 1.1960 12 6 4.6988 -4.5711 1.2025 13 6 4.9373 -5.2283 0.0044 14 16 5.5242 -6.8896 0.0094 15 6 4.7054 -4.5713 -1.2051 16 16 4.9991 -5.4007 -2.7318 17 6 4.2434 -3.2635 -1.2015 18 1 -0.4851 0.8400 0.0004 19 1 3.8752 -0.6803 0.8889 20 1 3.8746 -0.6797 -0.8910 21 1 4.0630 -2.7538 2.1297 22 1 4.8729 -5.0777 2.1402 23 1 6.8607 -6.7384 0.0104 24 1 3.8141 -5.9800 -2.9943 25 1 4.0631 -2.7519 -2.1354 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307190629.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:21 Heat of formation + Delta-G solvation = 23.240439 kcal Electronic energy + Delta-G solvation = -10928.894308 eV Core-core repulsion = 8931.765252 eV Total energy + Delta-G solvation = -1997.129056 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 226.018 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.87132 -33.65718 -31.70777 -30.82517 -27.88220 -23.40438 -22.69004 -20.78357 -18.11177 -17.31962 -16.90487 -15.73921 -15.24859 -15.00916 -14.25982 -13.59072 -13.29243 -12.97225 -12.47681 -11.94540 -11.51484 -11.43896 -11.01543 -10.77870 -10.45759 -10.15374 -9.98205 -9.54237 -8.71228 -8.65780 -8.54934 -8.20804 -7.35469 -6.19264 -4.20751 0.98824 1.46315 1.79820 1.98117 2.93898 3.03172 3.20860 3.29412 3.30122 3.99502 4.30623 5.05802 5.14625 5.43144 5.59819 5.69968 5.86154 6.10805 6.38730 6.57287 6.65003 6.80792 7.12196 7.25657 7.52910 8.33793 8.83786 9.39451 10.93272 Molecular weight = 226.02amu Principal moments of inertia in cm(-1) A = 0.043690 B = 0.006841 C = 0.006422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.719723 B = 4091.833368 C = 4359.221439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.073 3.927 3 Si 0.878 3.122 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.264 1.264 7 C -0.520 4.520 8 H 0.074 0.926 9 C 0.011 3.989 10 C -0.007 4.007 11 C -0.105 4.105 12 C -0.076 4.076 13 C -0.095 4.095 14 S -0.129 6.129 15 C -0.066 4.066 16 S -0.134 6.134 17 C -0.079 4.079 18 H 0.266 0.734 19 H 0.034 0.966 20 H 0.029 0.971 21 H 0.133 0.867 22 H 0.133 0.867 23 H 0.076 0.924 24 H 0.085 0.915 25 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.832 -8.211 -0.208 13.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.705 3.295 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.558 4.558 8 H 0.092 0.908 9 C -0.026 4.026 10 C -0.009 4.009 11 C -0.124 4.124 12 C -0.099 4.099 13 C -0.210 4.210 14 S 0.028 5.972 15 C -0.181 4.181 16 S 0.024 5.976 17 C -0.101 4.101 18 H 0.076 0.924 19 H 0.052 0.948 20 H 0.048 0.952 21 H 0.151 0.849 22 H 0.151 0.849 23 H 0.040 0.960 24 H 0.049 0.951 25 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 11.132 -9.419 -1.018 14.617 hybrid contribution -0.247 2.116 0.734 2.253 sum 10.885 -7.303 -0.284 13.111 Atomic orbital electron populations 1.69884 1.06302 1.27232 1.49898 1.24980 0.94744 0.99073 0.94193 0.86803 0.80368 0.83554 0.78803 1.19991 1.21108 1.18862 1.20844 0.87820 0.94833 1.52309 0.90782 1.18912 0.97767 0.87857 0.98065 1.20590 0.90271 0.98290 0.91758 1.21346 0.98216 0.93984 0.98903 1.21490 0.97412 0.94373 0.96580 1.21326 1.08429 0.96337 0.94952 1.85625 1.07547 1.05557 1.98450 1.21467 1.05878 0.96784 0.94006 1.85498 1.21357 1.66283 1.24492 1.21552 0.96676 0.92522 0.99319 0.92381 0.94770 0.95244 0.84889 0.84923 0.95999 0.95116 0.84425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.56 13.96 55.43 0.77 -25.78 15 2 C 0.07 2.01 5.47 -17.82 -0.10 1.91 15 3 Si 0.88 20.41 27.47 -169.99 -4.67 15.74 15 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 15 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 15 6 H -0.26 -5.81 6.54 56.52 0.37 -5.44 15 7 C -0.52 -14.02 9.65 -34.44 -0.33 -14.36 15 8 H 0.07 2.20 7.98 -52.48 -0.42 1.78 15 9 C 0.01 0.25 4.17 -29.03 -0.12 0.13 15 10 C -0.01 -0.14 5.07 -104.59 -0.53 -0.67 15 11 C -0.10 -1.79 9.69 -39.55 -0.38 -2.17 15 12 C -0.08 -1.17 9.78 -39.40 -0.39 -1.56 15 13 C -0.10 -1.52 6.12 -38.91 -0.24 -1.76 15 14 S -0.13 -1.78 24.55 -107.50 -2.64 -4.42 15 15 C -0.07 -1.12 6.12 -38.91 -0.24 -1.36 15 16 S -0.13 -1.99 24.55 -107.50 -2.64 -4.63 15 17 C -0.08 -1.43 9.43 -39.40 -0.37 -1.81 15 18 H 0.27 7.37 8.31 -40.82 -0.34 7.03 15 19 H 0.03 0.74 7.14 -51.93 -0.37 0.37 15 20 H 0.03 0.64 7.51 -51.93 -0.39 0.25 15 21 H 0.13 2.10 8.06 -52.49 -0.42 1.67 15 22 H 0.13 1.67 8.06 -52.49 -0.42 1.25 15 23 H 0.08 0.95 9.07 97.61 0.89 1.84 15 24 H 0.08 1.22 9.07 97.61 0.89 2.11 15 25 H 0.14 2.42 8.06 -52.48 -0.42 2.00 15 LS Contribution 250.04 15.07 3.77 3.77 Total: -1.00 -28.26 250.04 -7.95 -36.21 By element: Atomic # 1 Polarization: 0.60 SS G_CDS: 0.16 Total: 0.75 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: -2.70 Total: -21.64 kcal Atomic # 7 Polarization: -26.56 SS G_CDS: 0.77 Total: -25.78 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.67 Total: 15.74 kcal Atomic # 16 Polarization: -3.77 SS G_CDS: -5.28 Total: -9.04 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -28.26 -7.95 -36.21 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307190629.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.447 kcal (2) G-P(sol) polarization free energy of solvation -28.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds