Wall clock time and date at job start Mon Mar 30 2020 03:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29384 * 1 3 3 Si 1.86807 * 119.99799 * 2 1 4 4 H 1.48492 * 109.47089 * 240.00255 * 3 2 1 5 5 H 1.48498 * 109.47181 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46706 * 120.00154 * 3 2 1 7 7 C 1.46655 * 120.00373 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00384 * 180.02562 * 7 2 1 9 9 S 1.71200 * 119.99782 * 359.97438 * 7 2 1 10 10 C 1.76197 * 100.00275 * 174.63948 * 9 7 2 11 11 C 1.39542 * 120.87392 * 350.33792 * 10 9 7 12 12 C 1.37973 * 119.05641 * 179.97438 * 11 10 9 13 13 N 1.31954 * 120.85188 * 359.74526 * 12 11 10 14 14 C 1.31919 * 121.93714 * 0.52537 * 13 12 11 15 15 C 1.38012 * 120.85036 * 359.47376 * 14 13 12 16 16 N 1.48021 * 120.47099 * 180.28015 * 15 14 13 17 17 O 1.31698 * 119.99945 * 359.97438 * 16 15 14 18 18 O 1.31696 * 119.99964 * 179.97438 * 16 15 14 19 19 H 0.97001 * 120.00243 * 359.97438 * 1 2 3 20 20 H 1.08001 * 120.47521 * 359.95221 * 11 10 9 21 21 H 1.07996 * 119.57537 * 179.97438 * 12 11 10 22 22 H 1.07997 * 119.57724 * 179.75447 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2938 0.0000 0.0000 3 14 2.2278 1.6178 0.0000 4 1 3.0815 1.6965 -1.2125 5 1 1.2628 2.7465 0.0006 6 1 3.0815 1.6964 1.2125 7 6 2.0272 -1.2700 -0.0006 8 1 3.1072 -1.2700 -0.0001 9 16 1.1712 -2.7527 -0.0006 10 6 2.5143 -3.8815 -0.1634 11 6 3.8020 -3.4258 -0.4490 12 6 4.8262 -4.3427 -0.5680 13 7 4.6008 -5.6332 -0.4104 14 6 3.3975 -6.1042 -0.1449 15 6 2.3187 -5.2540 -0.0098 16 7 0.9733 -5.7911 0.2943 17 8 0.7991 -7.0886 0.4374 18 8 -0.0496 -4.9714 0.4217 19 1 -0.4850 0.8400 0.0004 20 1 3.9942 -2.3706 -0.5755 21 1 5.8259 -3.9993 -0.7892 22 1 3.2555 -7.1683 -0.0272 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307700561.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:34 Heat of formation + Delta-G solvation = 53.332591 kcal Electronic energy + Delta-G solvation = -12790.115044 eV Core-core repulsion = 10247.997667 eV Total energy + Delta-G solvation = -2542.117377 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 226.020 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.64090 -37.33878 -33.75028 -33.22964 -32.04471 -31.08370 -26.57701 -25.78031 -23.37680 -22.01592 -19.12273 -17.71543 -17.02373 -16.76278 -15.81204 -15.32271 -14.98566 -14.42695 -13.92287 -13.28260 -13.22224 -12.12554 -11.84324 -11.72386 -11.69290 -10.80500 -10.62283 -10.37629 -10.08172 -9.77182 -9.65183 -9.24044 -9.01163 -8.78322 -7.67696 -7.41222 -4.70603 0.10719 1.50783 1.91529 2.27983 2.52378 2.71360 2.76674 2.83078 3.45535 3.98619 4.13244 4.36155 4.80330 5.14372 5.35103 5.58452 5.99198 6.05746 6.31522 6.48098 6.72643 7.13590 7.34902 7.88943 7.99722 8.29417 9.54176 Molecular weight = 226.02amu Principal moments of inertia in cm(-1) A = 0.034729 B = 0.009651 C = 0.007595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.050334 B = 2900.635755 C = 3685.829627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.096 3.904 3 Si 0.935 3.065 4 H -0.258 1.258 5 H -0.271 1.271 6 H -0.258 1.258 7 C -0.659 4.659 8 H 0.110 0.890 9 S 0.428 5.572 10 C -0.127 4.127 11 C -0.179 4.179 12 C 0.110 3.890 13 N -0.518 5.518 14 C 0.204 3.796 15 C -0.086 4.086 16 N 0.021 4.979 17 O -0.301 6.301 18 O -0.239 6.239 19 H 0.301 0.699 20 H 0.152 0.848 21 H 0.155 0.845 22 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.458 1.742 -1.161 5.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.130 4.130 3 Si 0.757 3.243 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.183 1.183 7 C -0.805 4.805 8 H 0.128 0.872 9 S 0.693 5.307 10 C -0.254 4.254 11 C -0.205 4.205 12 C -0.040 4.040 13 N -0.236 5.236 14 C 0.035 3.965 15 C -0.198 4.198 16 N 0.445 4.555 17 O -0.454 6.454 18 O -0.404 6.404 19 H 0.113 0.887 20 H 0.169 0.831 21 H 0.172 0.828 22 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 4.838 1.472 -1.198 5.197 hybrid contribution 0.853 1.690 0.025 1.894 sum 5.692 3.162 -1.173 6.616 Atomic orbital electron populations 1.68866 1.08396 1.32133 1.31310 1.26862 0.94548 1.00937 0.90691 0.85907 0.79950 0.77840 0.80601 1.18265 1.19597 1.18257 1.25789 0.99523 0.95543 1.59674 0.87199 1.83644 1.00454 0.90362 1.56251 1.22985 1.03076 0.96414 1.02975 1.22090 0.91279 1.02115 1.05060 1.22625 0.98888 0.88489 0.94045 1.67953 1.20715 1.16251 1.18641 1.22414 0.85893 0.99946 0.88265 1.20418 0.82565 0.93163 1.23700 1.49804 1.02970 1.02229 1.00516 1.96133 1.93290 0.91857 1.64083 1.96105 1.31008 1.52727 1.60587 0.88666 0.83070 0.82788 0.81606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -17.69 13.25 55.99 0.74 -16.95 14 2 C 0.10 2.08 5.68 -15.19 -0.09 1.99 14 3 Si 0.93 16.23 29.64 -169.99 -5.04 11.19 14 4 H -0.26 -4.42 7.11 56.52 0.40 -4.02 14 5 H -0.27 -4.56 7.11 56.52 0.40 -4.16 14 6 H -0.26 -4.48 7.11 56.52 0.40 -4.08 14 7 C -0.66 -14.74 9.16 34.13 0.31 -14.42 14 8 H 0.11 2.29 5.12 -52.49 -0.27 2.03 14 9 S 0.43 9.76 18.43 -107.50 -1.98 7.77 14 10 C -0.13 -2.69 6.12 -38.63 -0.24 -2.93 14 11 C -0.18 -3.30 9.23 -39.19 -0.36 -3.66 14 12 C 0.11 1.83 11.17 -17.60 -0.20 1.63 14 13 N -0.52 -9.31 10.35 -13.33 -0.14 -9.45 14 14 C 0.20 3.86 10.73 -17.60 -0.19 3.67 14 15 C -0.09 -1.84 6.93 -79.56 -0.55 -2.40 14 16 N 0.02 0.49 4.98 34.15 0.17 0.67 14 17 O -0.30 -7.19 19.18 -31.57 -0.61 -7.80 14 18 O -0.24 -5.96 16.58 -31.57 -0.52 -6.49 14 19 H 0.30 6.08 8.26 -40.82 -0.34 5.74 14 20 H 0.15 2.63 5.31 -52.49 -0.28 2.35 14 21 H 0.15 1.94 8.06 -52.49 -0.42 1.52 14 22 H 0.17 2.82 7.59 -52.49 -0.40 2.42 14 LS Contribution 227.11 15.07 3.42 3.42 Total: -1.00 -26.19 227.11 -5.76 -31.96 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: -0.50 Total: 1.79 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: -1.31 Total: -16.11 kcal Atomic # 7 Polarization: -26.51 SS G_CDS: 0.77 Total: -25.74 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -1.13 Total: -14.29 kcal Atomic # 14 Polarization: 16.23 SS G_CDS: -5.04 Total: 11.19 kcal Atomic # 16 Polarization: 9.76 SS G_CDS: -1.98 Total: 7.77 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -26.19 -5.76 -31.96 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307700561.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.289 kcal (2) G-P(sol) polarization free energy of solvation -26.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds