Wall clock time and date at job start Mon Mar 30 2020 02:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47453 * 2 1 4 4 C 1.53006 * 109.46690 * 120.00189 * 2 1 3 5 5 H 1.08990 * 109.47041 * 303.93796 * 4 2 1 6 6 C 1.53000 * 109.47189 * 63.94501 * 4 2 1 7 7 N 1.46903 * 109.46811 * 183.94288 * 4 2 1 8 8 C 1.46854 * 111.00020 * 295.13631 * 7 4 2 9 9 C 1.53035 * 109.52316 * 174.16253 * 8 7 4 10 10 C 1.53120 * 109.27960 * 59.17438 * 9 8 7 11 11 C 1.50695 * 109.52467 * 182.44007 * 10 9 8 12 12 H 1.07997 * 120.00081 * 119.68319 * 11 10 9 13 13 C 1.37886 * 119.99779 * 299.68854 * 11 10 9 14 14 N 1.31509 * 120.00405 * 359.97438 * 13 11 10 15 15 Si 1.86808 * 119.99511 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.47121 * 59.99905 * 15 13 11 17 17 H 1.48501 * 109.46659 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.46916 * 299.99689 * 15 13 11 19 19 C 1.53113 * 109.16407 * 302.34866 * 10 9 8 20 20 C 1.46843 * 110.99743 * 170.92482 * 7 4 2 21 21 H 1.09005 * 109.47321 * 294.31369 * 1 2 3 22 22 H 1.09001 * 109.46853 * 54.30641 * 1 2 3 23 23 H 1.09002 * 109.47732 * 174.30734 * 1 2 3 24 24 H 1.09003 * 109.46998 * 239.99392 * 2 1 3 25 25 H 1.08997 * 109.46948 * 179.97438 * 3 2 1 26 26 H 1.08997 * 109.47024 * 299.99494 * 3 2 1 27 27 H 1.08997 * 109.47131 * 60.00285 * 3 2 1 28 28 H 1.09004 * 109.47171 * 59.99664 * 6 4 2 29 29 H 1.08997 * 109.47201 * 179.97438 * 6 4 2 30 30 H 1.08996 * 109.46842 * 299.99412 * 6 4 2 31 31 H 1.08995 * 109.45857 * 294.17603 * 8 7 4 32 32 H 1.08999 * 109.46241 * 54.14387 * 8 7 4 33 33 H 1.09001 * 109.50164 * 299.23849 * 9 8 7 34 34 H 1.09000 * 109.50065 * 179.11938 * 9 8 7 35 35 H 1.09006 * 109.52169 * 62.25476 * 10 9 8 36 36 H 0.96996 * 120.00076 * 180.02562 * 14 13 11 37 37 H 1.09003 * 109.50204 * 297.71209 * 19 10 9 38 38 H 1.09001 * 109.50826 * 177.59517 * 19 10 9 39 39 H 1.08996 * 109.46509 * 305.85543 * 20 7 4 40 40 H 1.09001 * 109.46214 * 65.82989 * 20 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.6201 -0.2499 2.1378 6 6 1.6125 -2.1896 1.2006 7 7 3.5058 -0.6394 1.2979 8 6 4.1111 -1.3655 0.1740 9 6 5.6244 -1.1382 0.1738 10 6 6.2100 -1.6321 1.4996 11 6 7.6912 -1.3563 1.5298 12 1 8.1063 -0.7190 2.2966 13 6 8.5165 -1.9176 0.5785 14 7 8.0112 -2.6940 -0.3549 15 14 10.3525 -1.5751 0.6156 16 1 10.9182 -2.0472 1.9049 17 1 11.0123 -2.2911 -0.5057 18 1 10.5866 -0.1152 0.4773 19 6 5.5286 -0.8950 2.6558 20 6 4.0179 -1.1294 2.5840 21 1 -0.3634 0.4231 0.9365 22 1 -0.3633 0.5996 -0.8346 23 1 -0.3634 -1.0226 -0.1019 24 1 1.8933 -0.5139 -0.8900 25 1 3.1300 1.4423 0.0005 26 1 1.6768 1.9562 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 2.0324 -2.6610 0.3120 29 1 1.9761 -2.7036 2.0903 30 1 0.5248 -2.2504 1.1646 31 1 3.9038 -2.4307 0.2761 32 1 3.6890 -1.0017 -0.7628 33 1 5.8326 -0.0745 0.0580 34 1 6.0752 -1.6898 -0.6512 35 1 6.0361 -2.7037 1.5979 36 1 8.5918 -3.0891 -1.0239 37 1 5.7353 0.1725 2.5789 38 1 5.9108 -1.2729 3.6040 39 1 3.5283 -0.5941 3.3975 40 1 3.8112 -2.1957 2.6747 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307723790.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:54 Heat of formation + Delta-G solvation = -23.106248 kcal Electronic energy + Delta-G solvation = -16706.815830 eV Core-core repulsion = 14327.389235 eV Total energy + Delta-G solvation = -2379.426596 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.06950 -35.84672 -33.16875 -31.15015 -29.77540 -28.85620 -26.80666 -25.37672 -23.23227 -22.21524 -21.28296 -19.18178 -18.14854 -16.34774 -15.60404 -14.65867 -14.46309 -14.12298 -13.95991 -13.53446 -12.87890 -12.82483 -12.48736 -12.19704 -12.05113 -11.84998 -11.68921 -11.33916 -11.26990 -10.90878 -10.71413 -10.61714 -10.54808 -10.37260 -10.16091 -10.05101 -9.80842 -9.33490 -8.88892 -8.62756 -8.23966 -7.57000 -5.92573 -3.97701 3.35672 3.39976 3.42994 4.47341 4.50558 4.92179 5.15501 5.36582 5.38689 5.47880 5.61134 5.65560 5.81292 5.83872 5.90247 6.01870 6.04959 6.07790 6.11918 6.16970 6.29591 6.32245 6.41748 6.45868 6.58997 6.71564 6.72107 6.76022 6.94024 7.15750 7.25720 7.52747 7.71009 7.82263 7.91808 8.11770 8.22818 8.54119 9.05899 9.66308 11.13534 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.046886 B = 0.006559 C = 0.006416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.052250 B = 4267.953369 C = 4362.849855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 C -0.136 4.136 4 C 0.084 3.916 5 H 0.072 0.928 6 C -0.187 4.187 7 N -0.525 5.525 8 C 0.054 3.946 9 C -0.103 4.103 10 C 0.049 3.951 11 C -0.510 4.510 12 H 0.053 0.947 13 C 0.061 3.939 14 N -0.893 5.893 15 Si 0.889 3.111 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.278 1.278 19 C -0.106 4.106 20 C 0.060 3.940 21 H 0.051 0.949 22 H 0.051 0.949 23 H 0.052 0.948 24 H 0.068 0.932 25 H 0.073 0.927 26 H 0.040 0.960 27 H 0.046 0.954 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.024 0.976 32 H 0.056 0.944 33 H 0.041 0.959 34 H 0.090 0.910 35 H 0.019 0.981 36 H 0.259 0.741 37 H 0.055 0.945 38 H 0.047 0.953 39 H 0.054 0.946 40 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.762 3.547 1.108 13.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.107 4.107 3 C -0.193 4.193 4 C -0.025 4.025 5 H 0.090 0.910 6 C -0.246 4.246 7 N -0.249 5.249 8 C -0.073 4.073 9 C -0.142 4.142 10 C 0.030 3.970 11 C -0.548 4.548 12 H 0.071 0.929 13 C -0.140 4.140 14 N -0.532 5.532 15 Si 0.717 3.283 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.203 1.203 19 C -0.144 4.144 20 C -0.068 4.068 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.071 0.929 24 H 0.087 0.913 25 H 0.092 0.908 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.042 0.958 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.108 0.892 35 H 0.037 0.963 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -12.553 3.934 0.911 13.187 hybrid contribution 0.750 -0.797 0.055 1.096 sum -11.804 3.136 0.966 12.251 Atomic orbital electron populations 1.21873 0.95842 1.01247 1.01364 1.21131 0.94462 0.97116 0.97973 1.21681 1.02929 0.94720 0.99979 1.21724 0.89214 0.93693 0.97858 0.91001 1.22507 1.01074 0.98747 1.02250 1.62208 1.03260 1.56207 1.03258 1.22308 0.98077 0.94763 0.92173 1.21650 0.89592 1.00311 1.02615 1.18665 0.93858 0.94568 0.89892 1.21188 0.92176 1.29203 1.12245 0.92882 1.24964 0.98370 0.95095 0.95559 1.69868 1.34939 1.32487 1.15908 0.86709 0.85785 0.78373 0.77412 1.20415 1.21403 1.20326 1.21673 0.91754 1.01076 0.99874 1.22104 0.97540 0.96786 0.90389 0.92972 0.92953 0.92925 0.91316 0.90848 0.94080 0.93488 0.92177 0.92796 0.92664 0.95767 0.92581 0.93997 0.89180 0.96310 0.93109 0.92588 0.93422 0.92757 0.95776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 8.78 37.16 0.33 -1.24 16 2 C -0.09 -1.16 2.15 -90.62 -0.20 -1.35 16 3 C -0.14 -1.82 8.99 37.16 0.33 -1.48 16 4 C 0.08 1.22 1.90 -67.71 -0.13 1.09 16 5 H 0.07 1.01 8.00 -51.93 -0.42 0.60 16 6 C -0.19 -2.58 8.20 37.16 0.30 -2.28 16 7 N -0.53 -9.30 3.68 -226.69 -0.83 -10.13 16 8 C 0.05 1.06 4.56 -3.83 -0.02 1.05 16 9 C -0.10 -2.47 5.12 -26.65 -0.14 -2.60 16 10 C 0.05 1.23 2.16 -91.65 -0.20 1.03 16 11 C -0.51 -14.19 8.56 -34.44 -0.29 -14.49 16 12 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 13 C 0.06 1.70 5.31 -17.82 -0.09 1.61 16 14 N -0.89 -25.71 11.37 55.43 0.63 -25.08 16 15 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 C -0.11 -2.27 5.32 -26.65 -0.14 -2.41 16 20 C 0.06 1.09 5.11 -3.83 -0.02 1.07 16 21 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 23 H 0.05 0.54 6.82 -51.93 -0.35 0.18 16 24 H 0.07 0.97 6.59 -51.93 -0.34 0.63 16 25 H 0.07 1.15 7.50 -51.93 -0.39 0.76 16 26 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.89 6.47 -51.93 -0.34 0.55 16 29 H 0.05 0.77 6.78 -51.93 -0.35 0.42 16 30 H 0.05 0.65 6.66 -51.93 -0.35 0.30 16 31 H 0.02 0.49 6.58 -51.93 -0.34 0.15 16 32 H 0.06 1.04 6.26 -51.93 -0.32 0.71 16 33 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.09 2.39 6.18 -51.93 -0.32 2.07 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.05 0.89 8.03 -51.93 -0.42 0.47 16 40 H 0.02 0.45 6.84 -51.93 -0.36 0.09 16 LS Contribution 295.97 15.07 4.46 4.46 Total: -1.00 -27.73 295.97 -8.24 -35.97 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -7.22 Total: -1.73 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: -0.26 Total: -20.00 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: -0.20 Total: -35.22 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -27.73 -8.24 -35.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307723790.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.865 kcal (2) G-P(sol) polarization free energy of solvation -27.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds