Wall clock time and date at job start Mon Mar 30 2020 02:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47453 * 2 1 4 4 C 1.53006 * 109.46690 * 120.00189 * 2 1 3 5 5 H 1.08990 * 109.47041 * 303.93796 * 4 2 1 6 6 C 1.53000 * 109.47189 * 63.94501 * 4 2 1 7 7 N 1.46903 * 109.46811 * 183.94288 * 4 2 1 8 8 C 1.46854 * 111.00020 * 295.13631 * 7 4 2 9 9 C 1.53035 * 109.52316 * 174.16253 * 8 7 4 10 10 C 1.53120 * 109.27960 * 59.17438 * 9 8 7 11 11 C 1.50695 * 109.52467 * 182.44007 * 10 9 8 12 12 H 1.07997 * 120.00081 * 119.68319 * 11 10 9 13 13 C 1.37886 * 119.99779 * 299.68854 * 11 10 9 14 14 N 1.31509 * 120.00405 * 359.97438 * 13 11 10 15 15 Si 1.86808 * 119.99511 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.47121 * 59.99905 * 15 13 11 17 17 H 1.48501 * 109.46659 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.46916 * 299.99689 * 15 13 11 19 19 C 1.53113 * 109.16407 * 302.34866 * 10 9 8 20 20 C 1.46843 * 110.99743 * 170.92482 * 7 4 2 21 21 H 1.09005 * 109.47321 * 294.31369 * 1 2 3 22 22 H 1.09001 * 109.46853 * 54.30641 * 1 2 3 23 23 H 1.09002 * 109.47732 * 174.30734 * 1 2 3 24 24 H 1.09003 * 109.46998 * 239.99392 * 2 1 3 25 25 H 1.08997 * 109.46948 * 179.97438 * 3 2 1 26 26 H 1.08997 * 109.47024 * 299.99494 * 3 2 1 27 27 H 1.08997 * 109.47131 * 60.00285 * 3 2 1 28 28 H 1.09004 * 109.47171 * 59.99664 * 6 4 2 29 29 H 1.08997 * 109.47201 * 179.97438 * 6 4 2 30 30 H 1.08996 * 109.46842 * 299.99412 * 6 4 2 31 31 H 1.08995 * 109.45857 * 294.17603 * 8 7 4 32 32 H 1.08999 * 109.46241 * 54.14387 * 8 7 4 33 33 H 1.09001 * 109.50164 * 299.23849 * 9 8 7 34 34 H 1.09000 * 109.50065 * 179.11938 * 9 8 7 35 35 H 1.09006 * 109.52169 * 62.25476 * 10 9 8 36 36 H 0.96996 * 120.00076 * 180.02562 * 14 13 11 37 37 H 1.09003 * 109.50204 * 297.71209 * 19 10 9 38 38 H 1.09001 * 109.50826 * 177.59517 * 19 10 9 39 39 H 1.08996 * 109.46509 * 305.85543 * 20 7 4 40 40 H 1.09001 * 109.46214 * 65.82989 * 20 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 1.6201 -0.2499 2.1378 6 6 1.6125 -2.1896 1.2006 7 7 3.5058 -0.6394 1.2979 8 6 4.1111 -1.3655 0.1740 9 6 5.6244 -1.1382 0.1738 10 6 6.2100 -1.6321 1.4996 11 6 7.6912 -1.3563 1.5298 12 1 8.1063 -0.7190 2.2966 13 6 8.5165 -1.9176 0.5785 14 7 8.0112 -2.6940 -0.3549 15 14 10.3525 -1.5751 0.6156 16 1 10.9182 -2.0472 1.9049 17 1 11.0123 -2.2911 -0.5057 18 1 10.5866 -0.1152 0.4773 19 6 5.5286 -0.8950 2.6558 20 6 4.0179 -1.1294 2.5840 21 1 -0.3634 0.4231 0.9365 22 1 -0.3633 0.5996 -0.8346 23 1 -0.3634 -1.0226 -0.1019 24 1 1.8933 -0.5139 -0.8900 25 1 3.1300 1.4423 0.0005 26 1 1.6768 1.9562 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 2.0324 -2.6610 0.3120 29 1 1.9761 -2.7036 2.0903 30 1 0.5248 -2.2504 1.1646 31 1 3.9038 -2.4307 0.2761 32 1 3.6890 -1.0017 -0.7628 33 1 5.8326 -0.0745 0.0580 34 1 6.0752 -1.6898 -0.6512 35 1 6.0361 -2.7037 1.5979 36 1 8.5918 -3.0891 -1.0239 37 1 5.7353 0.1725 2.5789 38 1 5.9108 -1.2729 3.6040 39 1 3.5283 -0.5941 3.3975 40 1 3.8112 -2.1957 2.6747 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307723790.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:53 Heat of formation + Delta-G solvation = -38.093376 kcal Electronic energy + Delta-G solvation = -16707.465721 eV Core-core repulsion = 14327.389235 eV Total energy + Delta-G solvation = -2380.076486 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.49542 -37.34710 -34.92024 -32.84569 -31.47022 -30.20933 -28.00056 -27.03615 -24.70142 -23.89120 -22.81500 -20.61395 -19.70537 -18.42964 -17.07465 -16.47222 -15.83258 -15.44646 -15.24858 -14.92382 -14.71420 -14.42607 -13.92138 -13.71094 -13.32955 -12.98179 -12.95549 -12.92412 -12.70996 -12.59838 -12.39354 -12.32681 -11.96572 -11.74663 -11.65626 -11.50139 -11.31717 -11.17040 -10.77064 -10.57130 -10.34462 -9.01419 -8.06949 -6.20471 1.41284 1.42802 1.50344 2.44295 3.11123 3.19887 3.82617 4.11420 4.18867 4.31430 4.35877 4.44876 4.51093 4.58156 4.65095 4.67516 4.78315 4.86873 4.91877 4.96236 5.01168 5.06995 5.11516 5.13446 5.18107 5.26524 5.27184 5.38255 5.43465 5.55787 5.60732 5.63680 5.68845 6.03066 6.07553 6.37744 6.42594 6.46930 6.91284 7.47111 8.97401 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.046886 B = 0.006559 C = 0.006416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.052250 B = 4267.953369 C = 4362.849855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.087 4.087 3 C -0.132 4.132 4 C 0.083 3.917 5 H 0.087 0.913 6 C -0.182 4.182 7 N -0.529 5.529 8 C 0.071 3.929 9 C -0.094 4.094 10 C 0.045 3.955 11 C -0.534 4.534 12 H 0.050 0.950 13 C 0.012 3.988 14 N -0.918 5.918 15 Si 0.953 3.047 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.272 1.272 19 C -0.099 4.099 20 C 0.066 3.934 21 H 0.062 0.938 22 H 0.061 0.939 23 H 0.058 0.942 24 H 0.055 0.945 25 H 0.044 0.956 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.044 0.956 29 H 0.046 0.954 30 H 0.080 0.920 31 H 0.015 0.985 32 H 0.068 0.932 33 H 0.028 0.972 34 H 0.057 0.943 35 H -0.015 1.015 36 H 0.260 0.740 37 H 0.050 0.950 38 H 0.050 0.950 39 H 0.084 0.916 40 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.213 4.389 1.664 14.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.106 4.106 3 C -0.190 4.190 4 C -0.025 4.025 5 H 0.105 0.895 6 C -0.241 4.241 7 N -0.253 5.253 8 C -0.057 4.057 9 C -0.132 4.132 10 C 0.027 3.973 11 C -0.572 4.572 12 H 0.068 0.932 13 C -0.186 4.186 14 N -0.558 5.558 15 Si 0.779 3.221 16 H -0.197 1.197 17 H -0.209 1.209 18 H -0.197 1.197 19 C -0.137 4.137 20 C -0.062 4.062 21 H 0.081 0.919 22 H 0.080 0.920 23 H 0.077 0.923 24 H 0.074 0.926 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.099 0.901 31 H 0.033 0.967 32 H 0.087 0.913 33 H 0.046 0.954 34 H 0.076 0.924 35 H 0.003 0.997 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.102 0.898 40 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -14.019 4.781 1.477 14.886 hybrid contribution 1.190 -1.055 -0.115 1.595 sum -12.829 3.726 1.361 13.428 Atomic orbital electron populations 1.21816 0.93436 1.02042 1.02402 1.21129 0.96397 0.96471 0.96576 1.21633 1.01024 0.95228 1.01080 1.21866 0.86684 0.94609 0.99315 0.89507 1.22453 1.02684 0.97760 1.01172 1.62157 1.05553 1.55511 1.02116 1.22001 0.95280 0.94545 0.93889 1.21405 0.92573 0.98510 1.00714 1.18638 0.93467 0.92985 0.92222 1.21573 0.93895 1.29385 1.12371 0.93189 1.25746 1.02824 0.94882 0.95174 1.70014 1.36360 1.33101 1.16340 0.85695 0.80433 0.78393 0.77628 1.19706 1.20919 1.19705 1.21539 0.93985 0.99915 0.98259 1.22024 0.95395 0.97133 0.91658 0.91941 0.91951 0.92277 0.92640 0.93697 0.92777 0.92641 0.93651 0.93502 0.90073 0.96680 0.91322 0.95362 0.92409 0.99681 0.93120 0.93148 0.93129 0.89812 0.96096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 8.78 71.98 0.63 -1.86 16 2 C -0.09 -2.08 2.15 -10.79 -0.02 -2.10 16 3 C -0.13 -3.27 8.99 71.98 0.65 -2.62 16 4 C 0.08 2.22 1.90 44.92 0.09 2.31 16 5 H 0.09 2.12 8.00 -2.39 -0.02 2.10 16 6 C -0.18 -4.63 8.20 71.98 0.59 -4.03 16 7 N -0.53 -18.16 3.68 -871.10 -3.20 -21.37 16 8 C 0.07 2.80 4.56 86.32 0.39 3.20 16 9 C -0.09 -4.62 5.12 30.65 0.16 -4.46 16 10 C 0.05 2.36 2.16 -11.46 -0.02 2.34 16 11 C -0.53 -30.46 8.56 25.60 0.22 -30.24 16 12 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 13 C 0.01 0.68 5.31 84.66 0.45 1.13 16 14 N -0.92 -54.37 11.37 21.45 0.24 -54.13 16 15 Si 0.95 44.63 29.54 68.60 2.03 46.66 16 16 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 17 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 18 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 19 C -0.10 -4.25 5.32 30.65 0.16 -4.09 16 20 C 0.07 2.32 5.11 86.33 0.44 2.76 16 21 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 22 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 23 H 0.06 0.99 6.82 -2.39 -0.02 0.97 16 24 H 0.06 1.48 6.59 -2.39 -0.02 1.46 16 25 H 0.04 1.36 7.50 -2.39 -0.02 1.34 16 26 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 27 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.04 1.28 6.47 -2.38 -0.02 1.27 16 29 H 0.05 1.25 6.78 -2.39 -0.02 1.24 16 30 H 0.08 1.64 6.66 -2.39 -0.02 1.62 16 31 H 0.02 0.63 6.58 -2.39 -0.02 0.61 16 32 H 0.07 2.54 6.26 -2.39 -0.01 2.53 16 33 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.06 3.21 6.18 -2.39 -0.01 3.20 16 35 H -0.01 -0.87 8.14 -2.38 -0.02 -0.89 16 36 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 37 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.08 2.51 8.03 -2.39 -0.02 2.49 16 40 H 0.02 0.76 6.84 -2.39 -0.02 0.74 16 Total: -1.00 -60.55 295.97 3.77 -56.78 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: 0.97 Total: 9.73 kcal Atomic # 6 Polarization: -41.41 SS G_CDS: 3.73 Total: -37.68 kcal Atomic # 7 Polarization: -72.53 SS G_CDS: -2.96 Total: -75.49 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -60.55 3.77 -56.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307723790.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.687 kcal (2) G-P(sol) polarization free energy of solvation -60.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds