Wall clock time and date at job start Mon Mar 30 2020 02:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46901 * 2 1 4 4 C 1.52990 * 109.47290 * 120.00624 * 2 1 3 5 5 C 1.53001 * 109.47151 * 174.17239 * 4 2 1 6 6 H 1.09004 * 110.28776 * 53.21250 * 5 4 2 7 7 C 1.54258 * 110.32482 * 175.33880 * 5 4 2 8 8 C 1.54383 * 105.05903 * 118.89641 * 7 5 4 9 9 N 1.48559 * 104.59686 * 23.85205 * 8 7 5 10 10 C 1.46903 * 111.00450 * 200.96135 * 9 8 7 11 11 H 1.09005 * 109.46783 * 60.12440 * 10 9 8 12 12 C 1.52993 * 109.47104 * 180.12296 * 10 9 8 13 13 C 1.50700 * 109.46815 * 300.12621 * 10 9 8 14 14 H 1.07996 * 120.00260 * 359.97438 * 13 10 9 15 15 C 1.37876 * 119.99731 * 179.97438 * 13 10 9 16 16 N 1.31513 * 120.00412 * 0.02562 * 15 13 10 17 17 Si 1.86798 * 119.99851 * 180.02562 * 15 13 10 18 18 H 1.48493 * 109.47249 * 90.00277 * 17 15 13 19 19 H 1.48504 * 109.47040 * 210.00091 * 17 15 13 20 20 H 1.48496 * 109.47299 * 330.00010 * 17 15 13 21 21 C 1.48724 * 104.28441 * 320.57633 * 9 8 7 22 22 H 1.09006 * 109.46927 * 299.99604 * 1 2 3 23 23 H 1.08999 * 109.47454 * 59.99712 * 1 2 3 24 24 H 1.09000 * 109.47275 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46432 * 240.00402 * 2 1 3 26 26 H 1.09000 * 109.47462 * 305.88834 * 3 2 1 27 27 H 1.09000 * 109.47299 * 65.89526 * 3 2 1 28 28 H 1.09002 * 109.47216 * 185.89092 * 3 2 1 29 29 H 1.08997 * 109.47742 * 54.17153 * 4 2 1 30 30 H 1.09004 * 109.47318 * 294.16855 * 4 2 1 31 31 H 1.08998 * 110.32595 * 237.78677 * 7 5 4 32 32 H 1.08998 * 110.32957 * 0.02562 * 7 5 4 33 33 H 1.08998 * 110.41505 * 142.63406 * 8 7 5 34 34 H 1.09003 * 110.41251 * 264.95527 * 8 7 5 35 35 H 1.08998 * 109.47484 * 300.00152 * 12 10 9 36 36 H 1.09005 * 109.47182 * 60.00390 * 12 10 9 37 37 H 1.09004 * 109.46729 * 179.97438 * 12 10 9 38 38 H 0.96990 * 120.00794 * 179.97438 * 16 15 13 39 39 H 1.09003 * 110.38821 * 280.63698 * 21 9 8 40 40 H 1.09004 * 110.50651 * 158.14684 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5630 -0.8494 1.1779 6 1 4.0166 0.1263 1.0035 7 6 4.1100 -1.4693 2.4803 8 6 4.7979 -2.7802 2.0424 9 7 5.1398 -2.5643 0.6129 10 6 5.3388 -3.8442 -0.0800 11 1 4.4227 -4.4325 -0.0267 12 6 5.6914 -3.5813 -1.5454 13 6 6.4621 -4.6027 0.5788 14 1 6.9769 -4.1764 1.4271 15 6 6.8325 -5.8409 0.0985 16 7 6.2059 -6.3598 -0.9348 17 14 8.2243 -6.7814 0.9155 18 1 7.6746 -7.6402 1.9950 19 1 8.9070 -7.6307 -0.0934 20 1 9.1978 -5.8211 1.4944 21 6 3.9665 -1.8357 0.0610 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 1.8932 -0.5138 -0.8901 26 1 1.5931 1.9859 -0.8326 27 1 1.7653 1.9250 0.9380 28 1 3.1248 1.4444 -0.1055 29 1 1.5941 -1.7144 1.3028 30 1 1.7645 -0.1509 2.1361 31 1 4.8334 -0.7988 2.9441 32 1 3.2935 -1.6828 3.1701 33 1 5.7015 -2.9494 2.6280 34 1 4.1140 -3.6223 2.1486 35 1 4.8790 -3.0327 -2.0219 36 1 6.6075 -2.9930 -1.5988 37 1 5.8395 -4.5311 -2.0594 38 1 6.4667 -7.2307 -1.2729 39 1 3.1517 -2.5296 -0.1460 40 1 4.2443 -1.2936 -0.8429 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307768023.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:33 Heat of formation + Delta-G solvation = -24.234719 kcal Electronic energy + Delta-G solvation = -16319.010451 eV Core-core repulsion = 13939.534921 eV Total energy + Delta-G solvation = -2379.475530 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.76472 -36.09361 -33.62374 -31.33711 -29.08619 -27.64296 -27.14733 -25.55088 -24.47425 -21.68009 -20.00867 -19.49948 -19.08603 -16.18573 -15.62051 -15.27654 -14.59375 -14.10947 -13.70303 -13.28562 -13.12887 -13.01805 -12.46652 -12.24533 -11.90057 -11.63871 -11.55723 -11.28710 -11.12370 -10.88766 -10.82058 -10.79482 -10.60992 -10.27065 -10.10797 -10.04454 -9.91493 -9.78934 -9.67074 -8.81966 -8.40169 -7.23965 -5.97667 -4.02028 3.32391 3.38810 3.43382 4.44147 4.79176 4.92786 4.98408 5.21315 5.27453 5.33972 5.40539 5.60960 5.63662 5.71839 5.76240 5.83523 5.91389 6.02360 6.02401 6.05399 6.19726 6.29417 6.31856 6.41825 6.48524 6.54163 6.70224 6.74522 6.81029 6.89632 7.10950 7.15940 7.53424 7.68032 7.86804 8.19846 8.37300 8.61276 9.04827 9.63002 11.09323 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.046785 B = 0.006074 C = 0.005740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.332534 B = 4608.487753 C = 4876.502505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.100 4.100 3 C -0.146 4.146 4 C -0.104 4.104 5 C -0.093 4.093 6 H 0.073 0.927 7 C -0.123 4.123 8 C 0.050 3.950 9 N -0.507 5.507 10 C 0.202 3.798 11 H -0.001 1.001 12 C -0.130 4.130 13 C -0.501 4.501 14 H 0.061 0.939 15 C 0.058 3.942 16 N -0.895 5.895 17 Si 0.896 3.104 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.040 3.960 22 H 0.051 0.949 23 H 0.051 0.949 24 H 0.053 0.947 25 H 0.072 0.928 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.034 0.966 35 H 0.006 0.994 36 H 0.033 0.967 37 H 0.084 0.916 38 H 0.260 0.740 39 H 0.032 0.968 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.624 11.260 3.018 14.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 C -0.203 4.203 4 C -0.142 4.142 5 C -0.112 4.112 6 H 0.092 0.908 7 C -0.161 4.161 8 C -0.079 4.079 9 N -0.232 5.232 10 C 0.095 3.905 11 H 0.016 0.984 12 C -0.188 4.188 13 C -0.540 4.540 14 H 0.079 0.921 15 C -0.143 4.143 16 N -0.534 5.534 17 Si 0.724 3.276 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.088 4.088 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.091 0.909 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.053 0.947 35 H 0.025 0.975 36 H 0.052 0.948 37 H 0.102 0.898 38 H 0.070 0.930 39 H 0.051 0.949 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.108 11.375 2.824 14.252 hybrid contribution -0.006 -1.152 0.400 1.220 sum -8.113 10.223 3.224 13.443 Atomic orbital electron populations 1.21844 0.95760 1.01527 1.01233 1.21138 0.95130 0.96371 0.99176 1.21864 1.01417 0.95945 1.01111 1.21746 0.95295 1.00104 0.97048 1.21963 0.94347 0.99309 0.95620 0.90814 1.22426 0.99202 0.97799 0.96645 1.22804 0.98678 0.94578 0.91818 1.65492 1.33775 1.22480 1.01429 1.19412 0.95788 0.83857 0.91409 0.98388 1.21767 0.97488 1.01550 0.97990 1.21135 1.16896 1.01317 1.14631 0.92084 1.24937 0.96785 0.97463 0.95111 1.69891 1.41529 1.17619 1.24370 0.86529 0.82307 0.79754 0.79014 1.20829 1.21277 1.19851 1.23094 0.93052 0.95713 0.96966 0.93035 0.93029 0.92826 0.90924 0.93203 0.93049 0.92265 0.92160 0.92369 0.91954 0.92352 0.90836 0.94744 0.97540 0.94779 0.89766 0.93042 0.94931 0.91507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.19 37.16 0.34 -1.15 16 2 C -0.10 -1.16 2.85 -90.63 -0.26 -1.42 16 3 C -0.15 -1.54 8.84 37.16 0.33 -1.21 16 4 C -0.10 -1.33 3.85 -26.74 -0.10 -1.43 16 5 C -0.09 -1.42 2.94 -89.24 -0.26 -1.68 16 6 H 0.07 1.08 6.50 -51.93 -0.34 0.74 16 7 C -0.12 -1.94 6.65 -25.35 -0.17 -2.11 16 8 C 0.05 1.00 5.69 -2.18 -0.01 0.99 16 9 N -0.51 -11.35 5.19 -223.26 -1.16 -12.51 16 10 C 0.20 5.27 1.83 -68.87 -0.13 5.14 16 11 H 0.00 -0.04 7.98 -51.93 -0.41 -0.46 16 12 C -0.13 -3.29 8.93 37.15 0.33 -2.95 16 13 C -0.50 -14.07 8.09 -34.44 -0.28 -14.35 16 14 H 0.06 1.72 6.95 -52.49 -0.36 1.35 16 15 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 16 N -0.89 -25.97 11.32 55.43 0.63 -25.35 16 17 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 21 C 0.04 0.75 4.25 -2.09 -0.01 0.75 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.93 7.41 -51.93 -0.38 0.55 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.66 6.75 -51.93 -0.35 0.31 16 29 H 0.06 0.82 7.99 -51.93 -0.41 0.41 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 0.83 7.71 -51.93 -0.40 0.42 16 33 H 0.07 1.53 7.42 -51.93 -0.39 1.14 16 34 H 0.03 0.73 7.98 -51.93 -0.41 0.32 16 35 H 0.01 0.13 7.07 -51.93 -0.37 -0.24 16 36 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.08 2.31 6.07 -51.93 -0.32 2.00 16 38 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.03 0.64 7.52 -51.93 -0.39 0.25 16 40 H 0.07 1.24 7.71 -51.93 -0.40 0.84 16 LS Contribution 304.26 15.07 4.59 4.59 Total: -1.00 -28.72 304.26 -8.73 -37.45 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -7.46 Total: -2.94 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: -0.31 Total: -17.89 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: -0.53 Total: -37.85 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -28.72 -8.73 -37.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307768023.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.219 kcal (2) G-P(sol) polarization free energy of solvation -28.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds