Wall clock time and date at job start Mon Mar 30 2020 02:54:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46901 * 2 1 4 4 C 1.52990 * 109.47290 * 120.00624 * 2 1 3 5 5 C 1.53001 * 109.47151 * 174.17239 * 4 2 1 6 6 H 1.09004 * 110.28776 * 53.21250 * 5 4 2 7 7 C 1.54258 * 110.32482 * 175.33880 * 5 4 2 8 8 C 1.54383 * 105.05903 * 118.89641 * 7 5 4 9 9 N 1.48559 * 104.59686 * 23.85205 * 8 7 5 10 10 C 1.46903 * 111.00450 * 200.96135 * 9 8 7 11 11 H 1.09005 * 109.46783 * 60.12440 * 10 9 8 12 12 C 1.52993 * 109.47104 * 180.12296 * 10 9 8 13 13 C 1.50700 * 109.46815 * 300.12621 * 10 9 8 14 14 H 1.07996 * 120.00260 * 359.97438 * 13 10 9 15 15 C 1.37876 * 119.99731 * 179.97438 * 13 10 9 16 16 N 1.31513 * 120.00412 * 0.02562 * 15 13 10 17 17 Si 1.86798 * 119.99851 * 180.02562 * 15 13 10 18 18 H 1.48493 * 109.47249 * 90.00277 * 17 15 13 19 19 H 1.48504 * 109.47040 * 210.00091 * 17 15 13 20 20 H 1.48496 * 109.47299 * 330.00010 * 17 15 13 21 21 C 1.48724 * 104.28441 * 320.57633 * 9 8 7 22 22 H 1.09006 * 109.46927 * 299.99604 * 1 2 3 23 23 H 1.08999 * 109.47454 * 59.99712 * 1 2 3 24 24 H 1.09000 * 109.47275 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46432 * 240.00402 * 2 1 3 26 26 H 1.09000 * 109.47462 * 305.88834 * 3 2 1 27 27 H 1.09000 * 109.47299 * 65.89526 * 3 2 1 28 28 H 1.09002 * 109.47216 * 185.89092 * 3 2 1 29 29 H 1.08997 * 109.47742 * 54.17153 * 4 2 1 30 30 H 1.09004 * 109.47318 * 294.16855 * 4 2 1 31 31 H 1.08998 * 110.32595 * 237.78677 * 7 5 4 32 32 H 1.08998 * 110.32957 * 0.02562 * 7 5 4 33 33 H 1.08998 * 110.41505 * 142.63406 * 8 7 5 34 34 H 1.09003 * 110.41251 * 264.95527 * 8 7 5 35 35 H 1.08998 * 109.47484 * 300.00152 * 12 10 9 36 36 H 1.09005 * 109.47182 * 60.00390 * 12 10 9 37 37 H 1.09004 * 109.46729 * 179.97438 * 12 10 9 38 38 H 0.96990 * 120.00794 * 179.97438 * 16 15 13 39 39 H 1.09003 * 110.38821 * 280.63698 * 21 9 8 40 40 H 1.09004 * 110.50651 * 158.14684 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5630 -0.8494 1.1779 6 1 4.0166 0.1263 1.0035 7 6 4.1100 -1.4693 2.4803 8 6 4.7979 -2.7802 2.0424 9 7 5.1398 -2.5643 0.6129 10 6 5.3388 -3.8442 -0.0800 11 1 4.4227 -4.4325 -0.0267 12 6 5.6914 -3.5813 -1.5454 13 6 6.4621 -4.6027 0.5788 14 1 6.9769 -4.1764 1.4271 15 6 6.8325 -5.8409 0.0985 16 7 6.2059 -6.3598 -0.9348 17 14 8.2243 -6.7814 0.9155 18 1 7.6746 -7.6402 1.9950 19 1 8.9070 -7.6307 -0.0934 20 1 9.1978 -5.8211 1.4944 21 6 3.9665 -1.8357 0.0610 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 1.8932 -0.5138 -0.8901 26 1 1.5931 1.9859 -0.8326 27 1 1.7653 1.9250 0.9380 28 1 3.1248 1.4444 -0.1055 29 1 1.5941 -1.7144 1.3028 30 1 1.7645 -0.1509 2.1361 31 1 4.8334 -0.7988 2.9441 32 1 3.2935 -1.6828 3.1701 33 1 5.7015 -2.9494 2.6280 34 1 4.1140 -3.6223 2.1486 35 1 4.8790 -3.0327 -2.0219 36 1 6.6075 -2.9930 -1.5988 37 1 5.8395 -4.5311 -2.0594 38 1 6.4667 -7.2307 -1.2729 39 1 3.1517 -2.5296 -0.1460 40 1 4.2443 -1.2936 -0.8429 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307768023.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:32 Heat of formation + Delta-G solvation = -40.812775 kcal Electronic energy + Delta-G solvation = -16319.729330 eV Core-core repulsion = 13939.534921 eV Total energy + Delta-G solvation = -2380.194408 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.22909 -37.36999 -35.42757 -33.14682 -30.56824 -29.38041 -27.95176 -27.37369 -26.06645 -23.29114 -21.37842 -21.16242 -20.33241 -18.28005 -17.18158 -16.76619 -16.07587 -15.59869 -15.03841 -14.77363 -14.58798 -14.41163 -14.00521 -13.36104 -13.22271 -13.12069 -13.02252 -12.85219 -12.70052 -12.56045 -12.37599 -12.19793 -12.06100 -11.90252 -11.73954 -11.65908 -11.21668 -11.19836 -11.00039 -10.88808 -10.55363 -9.08998 -8.13482 -6.26026 1.40220 1.41303 1.52520 2.40934 3.14324 3.44546 3.75473 3.87167 4.02400 4.15354 4.23584 4.39386 4.50137 4.65142 4.68941 4.75818 4.84009 4.86496 4.91640 4.92395 4.97712 4.98889 5.06753 5.08962 5.13371 5.20893 5.23750 5.28644 5.39153 5.43940 5.45778 5.56660 5.61354 5.69868 5.74463 6.20402 6.34173 6.63889 6.88196 7.43525 8.92910 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.046785 B = 0.006074 C = 0.005740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.332534 B = 4608.487753 C = 4876.502505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.101 4.101 3 C -0.143 4.143 4 C -0.098 4.098 5 C -0.083 4.083 6 H 0.087 0.913 7 C -0.112 4.112 8 C 0.046 3.954 9 N -0.519 5.519 10 C 0.207 3.793 11 H -0.040 1.040 12 C -0.118 4.118 13 C -0.520 4.520 14 H 0.055 0.945 15 C 0.010 3.990 16 N -0.922 5.922 17 Si 0.962 3.038 18 H -0.275 1.275 19 H -0.281 1.281 20 H -0.268 1.268 21 C 0.041 3.959 22 H 0.063 0.937 23 H 0.059 0.941 24 H 0.046 0.954 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.051 0.949 29 H 0.047 0.953 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.061 0.939 34 H 0.014 0.986 35 H 0.025 0.975 36 H 0.030 0.970 37 H 0.060 0.940 38 H 0.262 0.738 39 H 0.018 0.982 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.907 12.797 4.080 16.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 C -0.201 4.201 4 C -0.136 4.136 5 C -0.102 4.102 6 H 0.106 0.894 7 C -0.150 4.150 8 C -0.083 4.083 9 N -0.243 5.243 10 C 0.099 3.901 11 H -0.022 1.022 12 C -0.176 4.176 13 C -0.558 4.558 14 H 0.073 0.927 15 C -0.189 4.189 16 N -0.562 5.562 17 Si 0.788 3.212 18 H -0.201 1.201 19 H -0.207 1.207 20 H -0.193 1.193 21 C -0.088 4.088 22 H 0.082 0.918 23 H 0.078 0.922 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.080 0.920 34 H 0.033 0.967 35 H 0.044 0.956 36 H 0.049 0.951 37 H 0.079 0.921 38 H 0.071 0.929 39 H 0.037 0.963 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.400 12.928 3.891 15.901 hybrid contribution 0.052 -1.624 0.047 1.626 sum -8.348 11.304 3.938 14.594 Atomic orbital electron populations 1.21816 0.94531 1.01480 1.02280 1.21128 0.96205 0.96864 0.97730 1.21840 1.00913 0.95118 1.02194 1.21703 0.93194 1.00047 0.98643 1.21931 0.96232 0.98542 0.93493 0.89447 1.22398 0.99887 0.95363 0.97340 1.22836 0.98200 0.96602 0.90617 1.65408 1.35977 1.20398 1.02553 1.19205 0.93581 0.85121 0.92153 1.02214 1.21585 0.97991 1.00380 0.97643 1.21385 1.17544 1.02124 1.14790 0.92664 1.25756 0.99179 0.98308 0.95632 1.70018 1.42781 1.17962 1.25405 0.85487 0.79223 0.78366 0.78155 1.20101 1.20662 1.19299 1.23146 0.91306 0.95831 0.98474 0.91805 0.92189 0.93462 0.92770 0.92322 0.91831 0.93008 0.93390 0.90166 0.90376 0.90141 0.92009 0.96739 0.95584 0.95052 0.92144 0.92872 0.96338 0.91418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.19 71.98 0.66 -1.94 16 2 C -0.10 -2.14 2.85 -10.80 -0.03 -2.17 16 3 C -0.14 -2.62 8.84 71.98 0.64 -1.98 16 4 C -0.10 -2.28 3.85 30.59 0.12 -2.17 16 5 C -0.08 -2.36 2.94 -9.90 -0.03 -2.38 16 6 H 0.09 2.29 6.50 -2.39 -0.02 2.28 16 7 C -0.11 -3.31 6.65 31.49 0.21 -3.10 16 8 C 0.05 1.86 5.69 86.45 0.49 2.35 16 9 N -0.52 -23.50 5.19 -860.26 -4.46 -27.97 16 10 C 0.21 11.14 1.83 44.17 0.08 11.23 16 11 H -0.04 -2.38 7.98 -2.38 -0.02 -2.40 16 12 C -0.12 -6.10 8.93 71.98 0.64 -5.46 16 13 C -0.52 -29.85 8.09 25.60 0.21 -29.64 16 14 H 0.06 3.16 6.95 -2.91 -0.02 3.14 16 15 C 0.01 0.55 5.30 84.65 0.45 1.00 16 16 N -0.92 -54.60 11.32 21.45 0.24 -54.36 16 17 Si 0.96 44.72 29.54 68.60 2.03 46.74 16 18 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 19 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 20 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 21 C 0.04 1.51 4.25 86.42 0.37 1.88 16 22 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 23 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.05 1.34 7.41 -2.39 -0.02 1.33 16 26 H 0.06 0.96 8.14 -2.39 -0.02 0.95 16 27 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.05 1.02 6.75 -2.39 -0.02 1.00 16 29 H 0.05 1.24 7.99 -2.39 -0.02 1.22 16 30 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.08 2.05 7.71 -2.39 -0.02 2.03 16 33 H 0.06 2.60 7.42 -2.39 -0.02 2.58 16 34 H 0.01 0.63 7.98 -2.39 -0.02 0.61 16 35 H 0.03 1.19 7.07 -2.39 -0.02 1.17 16 36 H 0.03 1.58 8.14 -2.38 -0.02 1.56 16 37 H 0.06 3.41 6.07 -2.38 -0.01 3.40 16 38 H 0.26 14.68 8.31 -92.72 -0.77 13.91 16 39 H 0.02 0.74 7.52 -2.39 -0.02 0.72 16 40 H 0.07 2.48 7.71 -2.39 -0.02 2.46 16 Total: -1.00 -62.34 304.26 2.57 -59.77 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: 0.96 Total: 8.20 kcal Atomic # 6 Polarization: -36.19 SS G_CDS: 3.80 Total: -32.39 kcal Atomic # 7 Polarization: -78.11 SS G_CDS: -4.22 Total: -82.33 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -62.34 2.57 -59.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307768023.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.957 kcal (2) G-P(sol) polarization free energy of solvation -62.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds