Wall clock time and date at job start Mon Mar 30 2020 02:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53009 * 109.46964 * 2 1 4 4 C 1.53001 * 109.46959 * 119.99752 * 2 1 3 5 5 C 1.53001 * 109.46948 * 175.00221 * 4 2 1 6 6 H 1.09003 * 110.87737 * 57.39013 * 5 4 2 7 7 C 1.55144 * 110.98964 * 293.54993 * 5 4 2 8 8 C 1.54318 * 103.01616 * 206.25657 * 7 5 4 9 9 N 1.47447 * 107.23728 * 22.27981 * 8 7 5 10 10 C 1.46896 * 110.99872 * 123.25876 * 9 8 7 11 11 H 1.09001 * 109.47287 * 183.08837 * 10 9 8 12 12 C 1.53006 * 109.47276 * 303.08884 * 10 9 8 13 13 C 1.50695 * 109.47338 * 63.08899 * 10 9 8 14 14 H 1.08011 * 120.00069 * 354.60103 * 13 10 9 15 15 C 1.37875 * 120.00233 * 174.60530 * 13 10 9 16 16 N 1.31515 * 120.00045 * 351.84803 * 15 13 10 17 17 Si 1.86800 * 120.00219 * 171.57235 * 15 13 10 18 18 H 1.48511 * 109.47160 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47140 * 119.99586 * 17 15 13 20 20 H 1.48494 * 109.47270 * 239.99810 * 17 15 13 21 21 C 1.47845 * 108.56467 * 0.99323 * 9 8 7 22 22 H 1.09001 * 109.47217 * 300.00275 * 1 2 3 23 23 H 1.09002 * 109.46945 * 60.00434 * 1 2 3 24 24 H 1.09000 * 109.46663 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47374 * 240.00255 * 2 1 3 26 26 H 1.08996 * 109.46831 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.46920 * 300.00117 * 3 2 1 28 28 H 1.09000 * 109.46867 * 59.99945 * 3 2 1 29 29 H 1.08996 * 109.46659 * 55.00332 * 4 2 1 30 30 H 1.08998 * 109.47206 * 295.00009 * 4 2 1 31 31 H 1.08996 * 110.71035 * 87.87285 * 7 5 4 32 32 H 1.09000 * 110.70495 * 324.63415 * 7 5 4 33 33 H 1.09007 * 109.88890 * 262.87324 * 8 7 5 34 34 H 1.08995 * 110.02683 * 141.76516 * 8 7 5 35 35 H 1.08995 * 109.47070 * 178.27971 * 12 10 9 36 36 H 1.09002 * 109.46867 * 298.27720 * 12 10 9 37 37 H 1.08998 * 109.47148 * 58.27504 * 12 10 9 38 38 H 0.96998 * 119.99905 * 353.90354 * 16 15 13 39 39 H 1.08994 * 110.37685 * 94.72663 * 21 9 8 40 40 H 1.08997 * 110.37474 * 217.07918 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1880 6 1 4.0218 0.1543 1.0951 7 6 4.0089 -1.7610 0.0284 8 6 5.3786 -2.2854 0.5085 9 7 5.4095 -2.1467 1.9761 10 6 5.6734 -3.4397 2.6216 11 1 5.6366 -3.3195 3.7043 12 6 4.6140 -4.4535 2.1846 13 6 7.0384 -3.9337 2.2172 14 1 7.6130 -3.3910 1.4810 15 6 7.5539 -5.0786 2.7869 16 7 6.9307 -5.6498 3.7943 17 14 9.1334 -5.8227 2.1228 18 1 9.6307 -4.9998 0.9910 19 1 10.1562 -5.8547 3.1990 20 1 8.8687 -7.2053 1.6502 21 6 4.1170 -1.5854 2.4232 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.6054 -1.7197 1.2951 30 1 1.7516 -0.1583 2.1370 31 1 4.1154 -1.1975 -0.8985 32 1 3.3043 -2.5830 -0.0977 33 1 6.1788 -1.6941 0.0632 34 1 5.4946 -3.3334 0.2326 35 1 4.8274 -5.4208 2.6395 36 1 3.6298 -4.1110 2.5041 37 1 4.6301 -4.5509 1.0991 38 1 6.1588 -5.2193 4.1940 39 1 3.4363 -2.3852 2.7147 40 1 4.2697 -0.8947 3.2525 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307768024.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:34 Heat of formation + Delta-G solvation = -23.360880 kcal Electronic energy + Delta-G solvation = -16404.710405 eV Core-core repulsion = 14025.272767 eV Total energy + Delta-G solvation = -2379.437637 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.04175 -36.41345 -33.75487 -31.18777 -29.00610 -27.84169 -27.23547 -25.47610 -24.32174 -21.86332 -20.70837 -19.45969 -19.05202 -16.45232 -15.94587 -15.01482 -14.80942 -13.95885 -13.72889 -13.56480 -13.28769 -12.91237 -12.61260 -12.35457 -12.15328 -11.92239 -11.58399 -11.22906 -11.07936 -10.94972 -10.92991 -10.74700 -10.63470 -10.50557 -10.24017 -10.10618 -10.07523 -9.91800 -9.78718 -8.52651 -8.22412 -7.17924 -6.29769 -3.99257 3.47175 3.50252 3.64548 4.55209 4.70594 4.80985 4.89497 5.07568 5.19078 5.32797 5.39074 5.50518 5.54865 5.64565 5.67628 5.74908 5.85972 5.87592 5.93693 5.99406 6.09420 6.19347 6.27674 6.30664 6.31901 6.44115 6.45092 6.57942 6.59862 6.77208 6.78987 6.90286 7.18792 7.42136 7.89865 8.16584 8.42422 8.65451 8.94102 9.69956 11.06755 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.058722 B = 0.005767 C = 0.005595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.712391 B = 4854.176008 C = 5003.429815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 C -0.148 4.148 4 C -0.103 4.103 5 C -0.096 4.096 6 H 0.079 0.921 7 C -0.135 4.135 8 C 0.050 3.950 9 N -0.518 5.518 10 C 0.193 3.807 11 H 0.029 0.971 12 C -0.175 4.175 13 C -0.579 4.579 14 H 0.055 0.945 15 C 0.019 3.981 16 N -0.915 5.915 17 Si 1.070 2.930 18 H -0.289 1.289 19 H -0.289 1.289 20 H -0.288 1.288 21 C 0.040 3.960 22 H 0.052 0.948 23 H 0.051 0.949 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.018 0.982 37 H 0.041 0.959 38 H 0.269 0.731 39 H 0.043 0.957 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.437 9.934 -7.161 16.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.115 4.115 3 C -0.205 4.205 4 C -0.141 4.141 5 C -0.115 4.115 6 H 0.097 0.903 7 C -0.174 4.174 8 C -0.078 4.078 9 N -0.241 5.241 10 C 0.086 3.914 11 H 0.047 0.953 12 C -0.234 4.234 13 C -0.618 4.618 14 H 0.074 0.926 15 C -0.184 4.184 16 N -0.552 5.552 17 Si 0.899 3.101 18 H -0.215 1.215 19 H -0.215 1.215 20 H -0.215 1.215 21 C -0.088 4.088 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.088 0.912 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.037 0.963 37 H 0.060 0.940 38 H 0.080 0.920 39 H 0.061 0.939 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.984 8.968 -6.854 14.427 hybrid contribution -1.713 0.688 -0.317 1.873 sum -10.698 9.656 -7.171 16.097 Atomic orbital electron populations 1.21849 0.95710 1.01503 1.01360 1.21120 0.95131 0.96383 0.98897 1.21879 1.01503 0.95934 1.01170 1.21591 0.95038 1.00183 0.97288 1.22346 0.94428 0.99144 0.95623 0.90291 1.22871 0.98213 0.98502 0.97772 1.22656 0.94677 1.00962 0.89470 1.63754 1.28179 1.27639 1.04525 1.19532 0.94617 0.83034 0.94254 0.95307 1.22518 0.97576 1.02904 1.00442 1.21951 1.01228 1.12239 1.26331 0.92629 1.25732 1.02899 0.94760 0.95049 1.70719 1.21828 1.40692 1.21996 0.83544 0.75197 0.75788 0.75576 1.21524 1.21533 1.21450 1.23089 0.91532 0.97469 0.96742 0.92878 0.93038 0.92868 0.91169 0.92224 0.93228 0.92916 0.92194 0.92149 0.91983 0.92211 0.92357 0.91502 0.92028 0.96324 0.93972 0.91962 0.93884 0.91836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.19 37.16 0.34 -1.04 16 2 C -0.10 -1.04 2.84 -90.61 -0.26 -1.29 16 3 C -0.15 -1.48 8.96 37.16 0.33 -1.14 16 4 C -0.10 -1.28 4.20 -26.73 -0.11 -1.40 16 5 C -0.10 -1.44 2.83 -88.48 -0.25 -1.69 16 6 H 0.08 1.16 6.55 -51.93 -0.34 0.82 16 7 C -0.14 -2.13 5.54 -24.91 -0.14 -2.27 16 8 C 0.05 1.01 5.50 -2.83 -0.02 0.99 16 9 N -0.52 -11.52 5.17 -224.68 -1.16 -12.68 16 10 C 0.19 4.93 1.95 -68.87 -0.13 4.80 16 11 H 0.03 0.81 7.41 -51.93 -0.38 0.43 16 12 C -0.18 -4.17 8.36 37.16 0.31 -3.86 16 13 C -0.58 -16.33 7.80 -34.44 -0.27 -16.60 16 14 H 0.06 1.60 7.46 -52.48 -0.39 1.21 16 15 C 0.02 0.55 5.21 -17.82 -0.09 0.45 16 16 N -0.92 -27.49 12.81 55.43 0.71 -26.78 16 17 Si 1.07 25.50 29.91 -169.99 -5.08 20.42 16 18 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 21 C 0.04 0.74 5.96 -2.30 -0.01 0.72 16 22 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.79 7.29 -51.93 -0.38 0.41 16 26 H 0.06 0.64 6.54 -51.93 -0.34 0.30 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.78 8.11 -51.93 -0.42 0.36 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.86 8.03 -51.93 -0.42 0.45 16 32 H 0.06 0.94 8.01 -51.93 -0.42 0.53 16 33 H 0.06 1.16 8.14 -51.92 -0.42 0.73 16 34 H 0.07 1.47 5.38 -51.93 -0.28 1.19 16 35 H 0.06 1.60 6.46 -51.93 -0.34 1.26 16 36 H 0.02 0.39 6.24 -51.93 -0.32 0.07 16 37 H 0.04 0.97 6.11 -51.93 -0.32 0.65 16 38 H 0.27 8.08 6.32 -40.82 -0.26 7.82 16 39 H 0.04 0.82 5.70 -51.93 -0.30 0.52 16 40 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 298.28 15.07 4.49 4.49 Total: -1.00 -29.36 298.28 -8.41 -37.77 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -7.08 Total: -0.90 kcal Atomic # 6 Polarization: -22.03 SS G_CDS: -0.30 Total: -22.33 kcal Atomic # 7 Polarization: -39.01 SS G_CDS: -0.45 Total: -39.46 kcal Atomic # 14 Polarization: 25.50 SS G_CDS: -5.08 Total: 20.42 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.36 -8.41 -37.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307768024.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.413 kcal (2) G-P(sol) polarization free energy of solvation -29.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds