Wall clock time and date at job start Mon Mar 30 2020 02:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53009 * 109.46964 * 2 1 4 4 C 1.53001 * 109.46959 * 119.99752 * 2 1 3 5 5 C 1.53001 * 109.46948 * 175.00221 * 4 2 1 6 6 H 1.09003 * 110.87737 * 57.39013 * 5 4 2 7 7 C 1.55144 * 110.98964 * 293.54993 * 5 4 2 8 8 C 1.54318 * 103.01616 * 206.25657 * 7 5 4 9 9 N 1.47447 * 107.23728 * 22.27981 * 8 7 5 10 10 C 1.46896 * 110.99872 * 123.25876 * 9 8 7 11 11 H 1.09001 * 109.47287 * 183.08837 * 10 9 8 12 12 C 1.53006 * 109.47276 * 303.08884 * 10 9 8 13 13 C 1.50695 * 109.47338 * 63.08899 * 10 9 8 14 14 H 1.08011 * 120.00069 * 354.60103 * 13 10 9 15 15 C 1.37875 * 120.00233 * 174.60530 * 13 10 9 16 16 N 1.31515 * 120.00045 * 351.84803 * 15 13 10 17 17 Si 1.86800 * 120.00219 * 171.57235 * 15 13 10 18 18 H 1.48511 * 109.47160 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47140 * 119.99586 * 17 15 13 20 20 H 1.48494 * 109.47270 * 239.99810 * 17 15 13 21 21 C 1.47845 * 108.56467 * 0.99323 * 9 8 7 22 22 H 1.09001 * 109.47217 * 300.00275 * 1 2 3 23 23 H 1.09002 * 109.46945 * 60.00434 * 1 2 3 24 24 H 1.09000 * 109.46663 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47374 * 240.00255 * 2 1 3 26 26 H 1.08996 * 109.46831 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.46920 * 300.00117 * 3 2 1 28 28 H 1.09000 * 109.46867 * 59.99945 * 3 2 1 29 29 H 1.08996 * 109.46659 * 55.00332 * 4 2 1 30 30 H 1.08998 * 109.47206 * 295.00009 * 4 2 1 31 31 H 1.08996 * 110.71035 * 87.87285 * 7 5 4 32 32 H 1.09000 * 110.70495 * 324.63415 * 7 5 4 33 33 H 1.09007 * 109.88890 * 262.87324 * 8 7 5 34 34 H 1.08995 * 110.02683 * 141.76516 * 8 7 5 35 35 H 1.08995 * 109.47070 * 178.27971 * 12 10 9 36 36 H 1.09002 * 109.46867 * 298.27720 * 12 10 9 37 37 H 1.08998 * 109.47148 * 58.27504 * 12 10 9 38 38 H 0.96998 * 119.99905 * 353.90354 * 16 15 13 39 39 H 1.08994 * 110.37685 * 94.72663 * 21 9 8 40 40 H 1.08997 * 110.37474 * 217.07918 * 21 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1880 6 1 4.0218 0.1543 1.0951 7 6 4.0089 -1.7610 0.0284 8 6 5.3786 -2.2854 0.5085 9 7 5.4095 -2.1467 1.9761 10 6 5.6734 -3.4397 2.6216 11 1 5.6366 -3.3195 3.7043 12 6 4.6140 -4.4535 2.1846 13 6 7.0384 -3.9337 2.2172 14 1 7.6130 -3.3910 1.4810 15 6 7.5539 -5.0786 2.7869 16 7 6.9307 -5.6498 3.7943 17 14 9.1334 -5.8227 2.1228 18 1 9.6307 -4.9998 0.9910 19 1 10.1562 -5.8547 3.1990 20 1 8.8687 -7.2053 1.6502 21 6 4.1170 -1.5854 2.4232 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0277 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 3.1300 1.4426 -0.0005 27 1 1.6766 1.9564 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 1.6054 -1.7197 1.2951 30 1 1.7516 -0.1583 2.1370 31 1 4.1154 -1.1975 -0.8985 32 1 3.3043 -2.5830 -0.0977 33 1 6.1788 -1.6941 0.0632 34 1 5.4946 -3.3334 0.2326 35 1 4.8274 -5.4208 2.6395 36 1 3.6298 -4.1110 2.5041 37 1 4.6301 -4.5509 1.0991 38 1 6.1588 -5.2193 4.1940 39 1 3.4363 -2.3852 2.7147 40 1 4.2697 -0.8947 3.2525 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307768024.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:34 Heat of formation + Delta-G solvation = -40.572043 kcal Electronic energy + Delta-G solvation = -16405.456737 eV Core-core repulsion = 14025.272767 eV Total energy + Delta-G solvation = -2380.183969 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.54672 -37.62444 -35.54968 -32.88466 -30.44330 -29.56132 -27.98018 -27.26793 -25.96220 -23.60530 -21.90575 -21.04978 -20.31995 -18.49772 -17.35227 -16.59186 -15.90178 -15.66344 -15.22998 -14.93673 -14.68111 -14.25886 -14.01562 -13.67529 -13.60238 -13.06332 -13.04169 -12.82413 -12.59610 -12.54432 -12.46947 -12.28191 -11.94117 -11.89920 -11.81649 -11.64384 -11.29686 -11.21743 -11.17957 -10.64710 -10.39796 -8.93801 -8.58645 -6.28517 1.53172 1.61581 1.78687 2.57237 3.18804 3.34721 3.61512 3.83088 3.95869 4.12582 4.20670 4.31057 4.35412 4.51590 4.60010 4.60400 4.66490 4.75973 4.77905 4.82987 4.84774 4.93679 4.96608 5.05884 5.09999 5.12824 5.14870 5.21066 5.22335 5.34900 5.44667 5.47848 5.55123 5.58696 5.92145 6.10345 6.46860 6.52078 6.76235 7.48776 8.78008 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.058722 B = 0.005767 C = 0.005595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.712391 B = 4854.176008 C = 5003.429815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 C -0.147 4.147 4 C -0.097 4.097 5 C -0.082 4.082 6 H 0.086 0.914 7 C -0.123 4.123 8 C 0.048 3.952 9 N -0.537 5.537 10 C 0.196 3.804 11 H -0.005 1.005 12 C -0.158 4.158 13 C -0.589 4.589 14 H 0.045 0.955 15 C -0.029 4.029 16 N -0.936 5.936 17 Si 1.116 2.884 18 H -0.274 1.274 19 H -0.282 1.282 20 H -0.279 1.279 21 C 0.036 3.964 22 H 0.056 0.944 23 H 0.062 0.938 24 H 0.051 0.949 25 H 0.068 0.932 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.043 0.957 35 H 0.034 0.966 36 H 0.038 0.962 37 H 0.047 0.953 38 H 0.257 0.743 39 H 0.036 0.964 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.230 11.009 -8.649 17.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C -0.204 4.204 4 C -0.135 4.135 5 C -0.101 4.101 6 H 0.104 0.896 7 C -0.161 4.161 8 C -0.079 4.079 9 N -0.260 5.260 10 C 0.088 3.912 11 H 0.013 0.987 12 C -0.217 4.217 13 C -0.627 4.627 14 H 0.063 0.937 15 C -0.227 4.227 16 N -0.574 5.574 17 Si 0.939 3.061 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.205 1.205 21 C -0.092 4.092 22 H 0.075 0.925 23 H 0.081 0.919 24 H 0.070 0.930 25 H 0.086 0.914 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.054 0.946 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.798 10.065 -8.349 16.340 hybrid contribution -1.481 0.422 0.169 1.549 sum -11.279 10.486 -8.180 17.438 Atomic orbital electron populations 1.21827 0.94601 1.01682 1.02138 1.21092 0.96052 0.96512 0.97585 1.21873 1.01003 0.95547 1.01989 1.21549 0.92826 1.00381 0.98771 1.22278 0.96196 0.98604 0.92999 0.89556 1.22794 0.95442 0.98869 0.99020 1.22656 0.97379 0.99748 0.88151 1.63634 1.30796 1.25686 1.05886 1.19300 0.94227 0.85120 0.92534 0.98688 1.22286 0.98101 1.00918 1.00384 1.22218 1.02425 1.12321 1.25774 0.93661 1.27122 1.05457 0.95437 0.94639 1.70839 1.22150 1.41183 1.23225 0.82943 0.71863 0.75657 0.75649 1.19941 1.20792 1.20480 1.23182 0.89948 0.97504 0.98572 0.92502 0.91917 0.93026 0.91357 0.92952 0.92043 0.92569 0.92761 0.91466 0.89359 0.92004 0.92478 0.93866 0.94661 0.94270 0.93456 0.93299 0.94563 0.91790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.19 71.98 0.66 -1.64 16 2 C -0.09 -1.73 2.84 -10.79 -0.03 -1.76 16 3 C -0.15 -2.49 8.96 71.99 0.65 -1.84 16 4 C -0.10 -2.18 4.20 30.60 0.13 -2.05 16 5 C -0.08 -2.27 2.83 -9.41 -0.03 -2.30 16 6 H 0.09 2.32 6.55 -2.39 -0.02 2.30 16 7 C -0.12 -3.61 5.54 31.78 0.18 -3.44 16 8 C 0.05 1.91 5.50 86.65 0.48 2.38 16 9 N -0.54 -23.97 5.17 -864.75 -4.47 -28.44 16 10 C 0.20 10.29 1.95 44.17 0.09 10.37 16 11 H 0.00 -0.28 7.41 -2.39 -0.02 -0.29 16 12 C -0.16 -7.62 8.36 71.98 0.60 -7.02 16 13 C -0.59 -33.86 7.80 25.60 0.20 -33.66 16 14 H 0.05 2.64 7.46 -2.91 -0.02 2.62 16 15 C -0.03 -1.65 5.21 84.65 0.44 -1.21 16 16 N -0.94 -57.43 12.81 21.45 0.27 -57.15 16 17 Si 1.12 51.33 29.91 68.60 2.05 53.38 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 20 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 21 C 0.04 1.30 5.96 86.77 0.52 1.82 16 22 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 23 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.07 1.30 7.29 -2.39 -0.02 1.28 16 26 H 0.05 0.96 6.54 -2.39 -0.02 0.95 16 27 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 28 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.05 1.29 8.11 -2.39 -0.02 1.27 16 30 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.09 2.17 8.03 -2.39 -0.02 2.15 16 32 H 0.06 1.81 8.01 -2.39 -0.02 1.79 16 33 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 34 H 0.04 1.89 5.38 -2.39 -0.01 1.88 16 35 H 0.03 1.86 6.46 -2.39 -0.02 1.84 16 36 H 0.04 1.68 6.24 -2.39 -0.01 1.67 16 37 H 0.05 2.19 6.11 -2.39 -0.01 2.18 16 38 H 0.26 16.00 6.32 -92.71 -0.59 15.42 16 39 H 0.04 1.36 5.70 -2.39 -0.01 1.35 16 40 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -63.57 298.28 2.90 -60.68 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 1.16 Total: 11.89 kcal Atomic # 6 Polarization: -44.22 SS G_CDS: 3.88 Total: -40.35 kcal Atomic # 7 Polarization: -81.40 SS G_CDS: -4.20 Total: -85.59 kcal Atomic # 14 Polarization: 51.33 SS G_CDS: 2.05 Total: 53.38 kcal Total: -63.57 2.90 -60.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307768024.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.105 kcal (2) G-P(sol) polarization free energy of solvation -63.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds