Wall clock time and date at job start Mon Mar 30 2020 02:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47110 * 2 1 4 4 C 1.53007 * 109.47415 * 120.00162 * 2 1 3 5 5 C 1.53001 * 109.46872 * 64.67600 * 4 2 1 6 6 H 1.08991 * 109.47114 * 174.51587 * 5 4 2 7 7 C 1.53004 * 109.47165 * 54.51373 * 5 4 2 8 8 N 1.46901 * 109.46894 * 294.51270 * 5 4 2 9 9 C 1.46899 * 110.99747 * 165.02305 * 8 5 4 10 10 C 1.50703 * 109.47301 * 184.19139 * 9 8 5 11 11 H 1.07999 * 119.99494 * 5.07203 * 10 9 8 12 12 C 1.37876 * 120.00443 * 185.07368 * 10 9 8 13 13 N 1.31516 * 119.99734 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00166 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46955 * 90.00157 * 14 12 10 16 16 H 1.48508 * 109.46878 * 210.00096 * 14 12 10 17 17 H 1.48496 * 109.47124 * 329.99862 * 14 12 10 18 18 C 1.46901 * 111.00223 * 288.97541 * 8 5 4 19 19 C 1.53002 * 117.49391 * 359.50936 * 18 8 5 20 20 C 1.52995 * 117.49722 * 290.88708 * 18 8 5 21 21 H 1.08996 * 109.47316 * 52.55039 * 1 2 3 22 22 H 1.08995 * 109.46787 * 172.55448 * 1 2 3 23 23 H 1.08999 * 109.46917 * 292.55230 * 1 2 3 24 24 H 1.09006 * 109.47058 * 240.00152 * 2 1 3 25 25 H 1.09000 * 109.47060 * 179.97438 * 3 2 1 26 26 H 1.08995 * 109.47320 * 300.00055 * 3 2 1 27 27 H 1.09006 * 109.47036 * 60.00138 * 3 2 1 28 28 H 1.08998 * 109.46897 * 184.67506 * 4 2 1 29 29 H 1.08992 * 109.46772 * 304.67667 * 4 2 1 30 30 H 1.08997 * 109.46982 * 180.02562 * 7 5 4 31 31 H 1.08999 * 109.47005 * 299.99952 * 7 5 4 32 32 H 1.08988 * 109.47024 * 59.99911 * 7 5 4 33 33 H 1.08999 * 109.47219 * 304.19064 * 9 8 5 34 34 H 1.08999 * 109.47338 * 64.19365 * 9 8 5 35 35 H 0.97001 * 119.99789 * 179.97438 * 13 12 10 36 36 H 1.09000 * 115.55057 * 145.21758 * 18 8 5 37 37 H 1.08996 * 117.50050 * 359.97438 * 19 18 8 38 38 H 1.08999 * 117.49455 * 145.02346 * 19 18 8 39 39 H 1.09001 * 117.50019 * 214.97746 * 20 18 8 40 40 H 1.09001 * 117.50042 * 359.97438 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2493 5 6 1.6284 -2.1938 1.1918 6 1 2.0733 -2.7284 2.0309 7 6 2.1163 -2.8089 -0.1215 8 7 0.1648 -2.2962 1.2665 9 6 -0.2905 -3.6334 0.8633 10 6 -1.7971 -3.6693 0.8534 11 1 -2.3599 -2.7666 1.0398 12 6 -2.4569 -4.8545 0.6065 13 7 -1.7714 -5.9538 0.3800 14 14 -4.3243 -4.8991 0.5950 15 1 -4.8175 -4.6262 -0.7789 16 1 -4.7901 -6.2401 1.0310 17 1 -4.8498 -3.8664 1.5238 18 6 -0.3185 -1.9591 2.6121 19 6 0.7269 -1.5871 3.6656 20 6 0.0069 -2.9349 3.7447 21 1 -0.3634 0.6249 -0.8158 22 1 -0.3633 -1.0190 -0.1332 23 1 -0.3633 0.3941 0.9491 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6766 1.9563 0.8900 28 1 3.1268 -0.6493 1.2920 29 1 1.6100 -0.2582 2.1372 30 1 1.8226 -3.8577 -0.1626 31 1 1.6713 -2.2742 -0.9606 32 1 3.2022 -2.7328 -0.1769 33 1 0.0848 -3.8594 -0.1348 34 1 0.0859 -4.3736 1.5693 35 1 -2.2356 -6.7877 0.2067 36 1 -1.2785 -1.4443 2.6516 37 1 1.7732 -1.5930 3.3603 38 1 0.4547 -0.8275 4.3983 39 1 -0.7388 -3.0618 4.5295 40 1 0.5793 -3.8272 3.4913 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308455452.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:15 Heat of formation + Delta-G solvation = 29.877565 kcal Electronic energy + Delta-G solvation = -16994.370650 eV Core-core repulsion = 14617.241605 eV Total energy + Delta-G solvation = -2377.129045 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.27671 -35.69351 -33.47215 -32.30881 -29.91531 -26.87900 -26.39891 -25.83275 -22.48487 -21.93339 -21.30128 -19.59988 -17.82637 -16.26221 -16.13432 -14.98169 -14.71767 -14.22725 -13.84441 -13.34994 -13.12393 -12.47127 -12.23959 -11.99636 -11.74073 -11.67169 -11.53390 -11.09759 -10.94546 -10.90201 -10.69689 -10.54301 -10.42287 -10.16986 -10.03457 -9.86096 -9.74482 -9.69636 -9.16517 -9.03533 -8.35944 -6.97210 -5.98462 -3.98071 3.34009 3.40228 3.43613 4.44812 4.51770 4.88071 5.23830 5.37155 5.40703 5.45238 5.55399 5.58116 5.66305 5.77299 5.81913 6.00069 6.06440 6.11881 6.15906 6.20490 6.30734 6.35828 6.49904 6.52007 6.57598 6.64282 6.66875 6.81223 6.82805 6.92524 7.02338 7.33753 7.45504 7.59986 7.85496 8.13184 8.24850 8.61788 9.09543 9.65507 11.12584 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.028871 B = 0.008582 C = 0.008126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.611547 B = 3261.946278 C = 3445.051965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.087 4.087 3 C -0.146 4.146 4 C -0.109 4.109 5 C 0.075 3.925 6 H 0.032 0.968 7 C -0.151 4.151 8 N -0.491 5.491 9 C 0.186 3.814 10 C -0.499 4.499 11 H 0.061 0.939 12 C 0.055 3.945 13 N -0.900 5.900 14 Si 0.894 3.106 15 H -0.281 1.281 16 H -0.289 1.289 17 H -0.275 1.275 18 C 0.065 3.935 19 C -0.215 4.215 20 C -0.203 4.203 21 H 0.022 0.978 22 H 0.111 0.889 23 H 0.041 0.959 24 H 0.064 0.936 25 H 0.043 0.957 26 H 0.047 0.953 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.044 0.956 33 H 0.037 0.963 34 H -0.004 1.004 35 H 0.259 0.741 36 H 0.112 0.888 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.889 9.452 2.133 11.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.105 4.105 3 C -0.204 4.204 4 C -0.147 4.147 5 C -0.034 4.034 6 H 0.050 0.950 7 C -0.208 4.208 8 N -0.214 5.214 9 C 0.062 3.938 10 C -0.538 4.538 11 H 0.079 0.921 12 C -0.145 4.145 13 N -0.540 5.540 14 Si 0.722 3.278 15 H -0.208 1.208 16 H -0.215 1.215 17 H -0.200 1.200 18 C -0.044 4.044 19 C -0.252 4.252 20 C -0.242 4.242 21 H 0.041 0.959 22 H 0.130 0.870 23 H 0.060 0.940 24 H 0.083 0.917 25 H 0.062 0.938 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.014 0.986 35 H 0.069 0.931 36 H 0.130 0.870 37 H 0.116 0.884 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.668 9.592 1.743 11.811 hybrid contribution -0.662 -0.769 0.670 1.216 sum 6.006 8.823 2.414 10.943 Atomic orbital electron populations 1.22155 0.93813 1.05559 0.99077 1.21031 0.97599 0.93981 0.97890 1.21895 0.99850 0.97630 1.01001 1.21859 0.98586 0.95359 0.98858 1.21610 0.90166 0.95021 0.96623 0.95045 1.22047 0.99109 1.01836 0.97857 1.62534 1.07118 1.31593 1.20204 1.19908 0.95720 0.82444 0.95772 1.21124 0.91095 0.94513 1.47058 0.92059 1.24946 0.98229 0.95631 0.95734 1.69954 1.35245 0.99529 1.49288 0.86569 0.85921 0.77084 0.78240 1.20763 1.21485 1.19964 1.22494 0.97343 1.00305 0.84287 1.23518 0.98849 0.99293 1.03589 1.23168 1.03792 0.93495 1.03780 0.95857 0.87031 0.94023 0.91728 0.93776 0.93410 0.93319 0.93303 0.91144 0.91700 0.91547 0.93682 0.94534 0.98598 0.93097 0.87003 0.88418 0.89725 0.89639 0.89374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 8.07 37.16 0.30 -2.19 16 2 C -0.09 -1.28 2.57 -90.62 -0.23 -1.51 16 3 C -0.15 -1.84 9.19 37.16 0.34 -1.50 16 4 C -0.11 -1.62 3.85 -26.73 -0.10 -1.72 16 5 C 0.07 1.30 1.93 -67.71 -0.13 1.17 16 6 H 0.03 0.57 6.22 -51.93 -0.32 0.25 16 7 C -0.15 -2.58 7.91 37.16 0.29 -2.29 16 8 N -0.49 -9.86 1.18 -220.14 -0.26 -10.12 16 9 C 0.19 4.61 3.84 -4.97 -0.02 4.59 16 10 C -0.50 -13.57 8.58 -34.44 -0.30 -13.86 16 11 H 0.06 1.66 7.47 -52.49 -0.39 1.27 16 12 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 13 N -0.90 -26.45 13.29 55.43 0.74 -25.71 16 14 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 16 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 17 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 18 C 0.07 1.24 4.82 -67.71 -0.33 0.91 16 19 C -0.22 -3.42 7.90 -26.73 -0.21 -3.64 16 20 C -0.20 -3.77 9.39 -26.73 -0.25 -4.03 16 21 H 0.02 0.36 8.13 -51.93 -0.42 -0.06 16 22 H 0.11 2.21 5.65 -51.93 -0.29 1.92 16 23 H 0.04 0.69 8.06 -51.93 -0.42 0.27 16 24 H 0.06 0.98 6.07 -51.93 -0.32 0.66 16 25 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.07 1.06 5.48 -51.93 -0.28 0.77 16 30 H 0.06 1.25 6.25 -51.93 -0.32 0.92 16 31 H 0.07 1.14 6.24 -51.93 -0.32 0.82 16 32 H 0.04 0.65 8.14 -51.94 -0.42 0.23 16 33 H 0.04 0.96 5.93 -51.93 -0.31 0.66 16 34 H 0.00 -0.10 6.83 -51.93 -0.35 -0.46 16 35 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.11 2.19 8.04 -51.93 -0.42 1.78 16 37 H 0.10 1.51 4.81 -51.93 -0.25 1.26 16 38 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 40 H 0.09 1.79 7.12 -51.93 -0.37 1.42 16 LS Contribution 296.43 15.07 4.47 4.47 Total: -1.00 -27.61 296.43 -7.70 -35.31 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -6.89 Total: 2.07 kcal Atomic # 6 Polarization: -21.88 SS G_CDS: -0.73 Total: -22.61 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 0.48 Total: -35.82 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.61 -7.70 -35.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308455452.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.189 kcal (2) G-P(sol) polarization free energy of solvation -27.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds