Wall clock time and date at job start Mon Mar 30 2020 02:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47110 * 2 1 4 4 C 1.53007 * 109.47415 * 120.00162 * 2 1 3 5 5 C 1.53001 * 109.46872 * 64.67600 * 4 2 1 6 6 H 1.08991 * 109.47114 * 174.51587 * 5 4 2 7 7 C 1.53004 * 109.47165 * 54.51373 * 5 4 2 8 8 N 1.46901 * 109.46894 * 294.51270 * 5 4 2 9 9 C 1.46899 * 110.99747 * 165.02305 * 8 5 4 10 10 C 1.50703 * 109.47301 * 184.19139 * 9 8 5 11 11 H 1.07999 * 119.99494 * 5.07203 * 10 9 8 12 12 C 1.37876 * 120.00443 * 185.07368 * 10 9 8 13 13 N 1.31516 * 119.99734 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00166 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46955 * 90.00157 * 14 12 10 16 16 H 1.48508 * 109.46878 * 210.00096 * 14 12 10 17 17 H 1.48496 * 109.47124 * 329.99862 * 14 12 10 18 18 C 1.46901 * 111.00223 * 288.97541 * 8 5 4 19 19 C 1.53002 * 117.49391 * 359.50936 * 18 8 5 20 20 C 1.52995 * 117.49722 * 290.88708 * 18 8 5 21 21 H 1.08996 * 109.47316 * 52.55039 * 1 2 3 22 22 H 1.08995 * 109.46787 * 172.55448 * 1 2 3 23 23 H 1.08999 * 109.46917 * 292.55230 * 1 2 3 24 24 H 1.09006 * 109.47058 * 240.00152 * 2 1 3 25 25 H 1.09000 * 109.47060 * 179.97438 * 3 2 1 26 26 H 1.08995 * 109.47320 * 300.00055 * 3 2 1 27 27 H 1.09006 * 109.47036 * 60.00138 * 3 2 1 28 28 H 1.08998 * 109.46897 * 184.67506 * 4 2 1 29 29 H 1.08992 * 109.46772 * 304.67667 * 4 2 1 30 30 H 1.08997 * 109.46982 * 180.02562 * 7 5 4 31 31 H 1.08999 * 109.47005 * 299.99952 * 7 5 4 32 32 H 1.08988 * 109.47024 * 59.99911 * 7 5 4 33 33 H 1.08999 * 109.47219 * 304.19064 * 9 8 5 34 34 H 1.08999 * 109.47338 * 64.19365 * 9 8 5 35 35 H 0.97001 * 119.99789 * 179.97438 * 13 12 10 36 36 H 1.09000 * 115.55057 * 145.21758 * 18 8 5 37 37 H 1.08996 * 117.50050 * 359.97438 * 19 18 8 38 38 H 1.08999 * 117.49455 * 145.02346 * 19 18 8 39 39 H 1.09001 * 117.50019 * 214.97746 * 20 18 8 40 40 H 1.09001 * 117.50042 * 359.97438 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2493 5 6 1.6284 -2.1938 1.1918 6 1 2.0733 -2.7284 2.0309 7 6 2.1163 -2.8089 -0.1215 8 7 0.1648 -2.2962 1.2665 9 6 -0.2905 -3.6334 0.8633 10 6 -1.7971 -3.6693 0.8534 11 1 -2.3599 -2.7666 1.0398 12 6 -2.4569 -4.8545 0.6065 13 7 -1.7714 -5.9538 0.3800 14 14 -4.3243 -4.8991 0.5950 15 1 -4.8175 -4.6262 -0.7789 16 1 -4.7901 -6.2401 1.0310 17 1 -4.8498 -3.8664 1.5238 18 6 -0.3185 -1.9591 2.6121 19 6 0.7269 -1.5871 3.6656 20 6 0.0069 -2.9349 3.7447 21 1 -0.3634 0.6249 -0.8158 22 1 -0.3633 -1.0190 -0.1332 23 1 -0.3633 0.3941 0.9491 24 1 1.8933 -0.5138 -0.8900 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8899 27 1 1.6766 1.9563 0.8900 28 1 3.1268 -0.6493 1.2920 29 1 1.6100 -0.2582 2.1372 30 1 1.8226 -3.8577 -0.1626 31 1 1.6713 -2.2742 -0.9606 32 1 3.2022 -2.7328 -0.1769 33 1 0.0848 -3.8594 -0.1348 34 1 0.0859 -4.3736 1.5693 35 1 -2.2356 -6.7877 0.2067 36 1 -1.2785 -1.4443 2.6516 37 1 1.7732 -1.5930 3.3603 38 1 0.4547 -0.8275 4.3983 39 1 -0.7388 -3.0618 4.5295 40 1 0.5793 -3.8272 3.4913 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308455452.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:15 Heat of formation + Delta-G solvation = 16.622047 kcal Electronic energy + Delta-G solvation = -16994.945452 eV Core-core repulsion = 14617.241605 eV Total energy + Delta-G solvation = -2377.703848 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.75817 -37.00110 -35.30299 -34.03421 -31.54151 -28.48736 -27.66306 -27.43615 -24.30858 -23.34944 -22.80492 -20.96405 -19.27749 -18.33416 -17.61533 -16.68485 -16.30975 -15.74356 -15.36300 -14.73839 -14.33308 -14.17539 -14.10762 -13.42222 -13.28074 -12.98380 -12.86902 -12.77644 -12.63264 -12.47973 -12.18760 -12.14186 -11.91764 -11.75632 -11.50719 -11.31802 -11.11858 -11.10281 -10.96650 -10.65896 -10.48198 -8.61158 -8.14205 -6.21134 1.40981 1.41541 1.52100 2.42825 3.00927 3.19761 3.36466 3.97783 4.09206 4.14581 4.16136 4.17762 4.35021 4.47621 4.55712 4.71673 4.79277 4.88376 4.96622 4.97700 5.05577 5.07482 5.11885 5.22909 5.25506 5.30474 5.32321 5.33892 5.40579 5.46740 5.55518 5.59089 5.73301 5.78196 6.12829 6.18712 6.46324 6.78382 6.97058 7.47403 8.96649 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.028871 B = 0.008582 C = 0.008126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.611547 B = 3261.946278 C = 3445.051965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.086 4.086 3 C -0.140 4.140 4 C -0.100 4.100 5 C 0.071 3.929 6 H 0.026 0.974 7 C -0.146 4.146 8 N -0.486 5.486 9 C 0.206 3.794 10 C -0.507 4.507 11 H 0.059 0.941 12 C 0.002 3.998 13 N -0.936 5.936 14 Si 0.959 3.041 15 H -0.275 1.275 16 H -0.286 1.286 17 H -0.266 1.266 18 C 0.039 3.961 19 C -0.171 4.171 20 C -0.218 4.218 21 H 0.028 0.972 22 H 0.077 0.923 23 H 0.039 0.961 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.031 0.969 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.014 0.986 34 H -0.039 1.039 35 H 0.260 0.740 36 H 0.104 0.896 37 H 0.108 0.892 38 H 0.115 0.885 39 H 0.091 0.909 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.434 11.663 2.778 14.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.104 4.104 3 C -0.197 4.197 4 C -0.137 4.137 5 C -0.037 4.037 6 H 0.044 0.956 7 C -0.203 4.203 8 N -0.209 5.209 9 C 0.081 3.919 10 C -0.546 4.546 11 H 0.077 0.923 12 C -0.196 4.196 13 N -0.578 5.578 14 Si 0.785 3.215 15 H -0.201 1.201 16 H -0.212 1.212 17 H -0.190 1.190 18 C -0.070 4.070 19 C -0.208 4.208 20 C -0.257 4.257 21 H 0.047 0.953 22 H 0.095 0.905 23 H 0.058 0.942 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.093 0.907 30 H 0.050 0.950 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.032 0.968 34 H -0.021 1.021 35 H 0.069 0.931 36 H 0.122 0.878 37 H 0.126 0.874 38 H 0.133 0.867 39 H 0.110 0.890 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.220 11.828 2.394 14.063 hybrid contribution -0.795 -1.448 0.464 1.716 sum 6.425 10.380 2.858 12.538 Atomic orbital electron populations 1.22026 0.95565 1.03355 0.99137 1.21007 0.96000 0.95782 0.97635 1.21814 1.00845 0.95568 1.01492 1.21804 1.00102 0.92722 0.99079 1.21773 0.88303 0.97262 0.96410 0.95629 1.21985 1.00982 0.99605 0.97740 1.62470 1.09052 1.28081 1.21308 1.19477 0.94541 0.84221 0.93697 1.21430 0.92443 0.94384 1.46293 0.92256 1.25789 1.02968 0.95319 0.95477 1.70086 1.37111 1.00103 1.50475 0.85532 0.80272 0.77199 0.78505 1.20122 1.21228 1.19039 1.22519 0.98698 1.01616 0.84194 1.23563 0.98348 0.97532 1.01385 1.23110 1.04746 0.93939 1.03921 0.95309 0.90461 0.94217 0.92163 0.92138 0.92979 0.92851 0.90758 0.90734 0.94954 0.91910 0.90664 0.96805 1.02087 0.93087 0.87782 0.87389 0.86719 0.89016 0.91907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.64 8.07 71.98 0.58 -4.06 16 2 C -0.09 -2.33 2.57 -10.79 -0.03 -2.36 16 3 C -0.14 -3.01 9.19 71.98 0.66 -2.35 16 4 C -0.10 -2.68 3.85 30.60 0.12 -2.56 16 5 C 0.07 2.42 1.93 44.92 0.09 2.51 16 6 H 0.03 0.92 6.22 -2.39 -0.01 0.90 16 7 C -0.15 -4.99 7.91 71.98 0.57 -4.43 16 8 N -0.49 -19.83 1.18 -850.41 -1.01 -20.83 16 9 C 0.21 10.71 3.84 85.56 0.33 11.04 16 10 C -0.51 -28.38 8.58 25.60 0.22 -28.16 16 11 H 0.06 3.27 7.47 -2.91 -0.02 3.25 16 12 C 0.00 0.10 5.46 84.65 0.46 0.56 16 13 N -0.94 -56.79 13.29 21.45 0.28 -56.50 16 14 Si 0.96 44.91 29.54 68.60 2.03 46.93 16 15 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 16 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 17 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 18 C 0.04 1.48 4.82 44.91 0.22 1.69 16 19 C -0.17 -5.03 7.90 30.60 0.24 -4.79 16 20 C -0.22 -8.09 9.39 30.59 0.29 -7.81 16 21 H 0.03 0.86 8.13 -2.39 -0.02 0.84 16 22 H 0.08 3.08 5.65 -2.39 -0.01 3.07 16 23 H 0.04 1.26 8.06 -2.39 -0.02 1.24 16 24 H 0.06 1.70 6.07 -2.38 -0.01 1.69 16 25 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 28 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.07 1.96 5.48 -2.39 -0.01 1.95 16 30 H 0.03 1.29 6.25 -2.39 -0.01 1.28 16 31 H 0.06 2.17 6.24 -2.39 -0.01 2.16 16 32 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.01 0.78 5.93 -2.39 -0.01 0.77 16 34 H -0.04 -2.24 6.83 -2.39 -0.02 -2.25 16 35 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 36 H 0.10 4.07 8.04 -2.39 -0.02 4.05 16 37 H 0.11 3.00 4.81 -2.39 -0.01 2.98 16 38 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 39 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 40 H 0.06 2.64 7.12 -2.39 -0.02 2.63 16 Total: -1.00 -61.12 296.43 6.04 -55.08 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.99 Total: 16.03 kcal Atomic # 6 Polarization: -44.45 SS G_CDS: 3.74 Total: -40.70 kcal Atomic # 7 Polarization: -76.61 SS G_CDS: -0.72 Total: -77.33 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -61.12 6.04 -55.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308455452.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.698 kcal (2) G-P(sol) polarization free energy of solvation -61.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds