Wall clock time and date at job start Mon Mar 30 2020 03:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46897 * 109.46920 * 2 1 4 4 C 1.46904 * 111.00184 * 294.86687 * 3 2 1 5 5 C 1.50697 * 109.47040 * 291.41537 * 4 3 2 6 6 H 1.08004 * 120.00381 * 3.16695 * 5 4 3 7 7 C 1.37878 * 120.00205 * 183.17123 * 5 4 3 8 8 N 1.31522 * 119.99566 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00309 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47329 * 90.00039 * 9 7 5 11 11 H 1.48504 * 109.47166 * 209.99986 * 9 7 5 12 12 H 1.48495 * 109.47299 * 329.99550 * 9 7 5 13 13 C 1.46896 * 111.00389 * 58.82524 * 3 2 1 14 14 C 1.52997 * 109.47000 * 77.04835 * 13 3 2 15 15 C 1.52992 * 110.01929 * 53.13783 * 14 13 3 16 16 C 1.54272 * 110.03556 * 291.69220 * 14 13 3 17 17 C 1.54882 * 104.20077 * 217.10865 * 16 14 13 18 18 C 1.54894 * 102.74894 * 37.94042 * 17 16 14 19 19 C 1.53880 * 110.03235 * 174.53005 * 14 13 3 20 20 H 1.09000 * 109.47071 * 53.14611 * 1 2 3 21 21 H 1.09001 * 109.47029 * 173.14915 * 1 2 3 22 22 H 1.09000 * 109.46695 * 293.14619 * 1 2 3 23 23 H 1.08998 * 109.46837 * 239.99710 * 2 1 3 24 24 H 1.09000 * 109.46710 * 120.00044 * 2 1 3 25 25 H 1.09001 * 109.46589 * 51.40959 * 4 3 2 26 26 H 1.08996 * 109.47388 * 171.41330 * 4 3 2 27 27 H 0.97001 * 119.99943 * 179.97438 * 8 7 5 28 28 H 1.08996 * 109.47008 * 197.05101 * 13 3 2 29 29 H 1.08999 * 109.46716 * 317.04906 * 13 3 2 30 30 H 1.09003 * 109.47112 * 60.00101 * 15 14 13 31 31 H 1.09003 * 109.47298 * 179.97438 * 15 14 13 32 32 H 1.08999 * 109.47253 * 300.00063 * 15 14 13 33 33 H 1.09000 * 110.48371 * 335.79208 * 16 14 13 34 34 H 1.09003 * 110.48282 * 98.42764 * 16 14 13 35 35 H 1.09005 * 110.75426 * 279.63036 * 17 16 14 36 36 H 1.09000 * 110.75769 * 156.25990 * 17 16 14 37 37 H 1.09000 * 110.48848 * 203.37976 * 18 17 16 38 38 H 1.09005 * 110.59691 * 80.79339 * 18 17 16 39 39 H 1.08997 * 110.03219 * 238.56737 * 19 14 13 40 40 H 1.09003 * 110.02955 * 359.95254 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6514 2.0736 -1.2443 5 6 2.4218 1.4785 -2.3947 6 1 3.0771 0.6363 -2.2277 7 6 2.2903 2.0092 -3.6604 8 7 1.4921 3.0345 -3.8639 9 14 3.2458 1.2720 -5.0862 10 1 2.4384 0.1998 -5.7215 11 1 3.5377 2.3303 -6.0863 12 1 4.5210 0.7000 -4.5845 13 6 1.5259 2.1180 1.1733 14 6 2.3313 1.7070 2.4075 15 6 3.8277 1.8717 2.1351 16 6 2.0188 0.2427 2.7790 17 6 2.0253 0.2339 4.3278 18 6 1.3688 1.5919 4.6801 19 6 1.9180 2.5649 3.6163 20 1 -0.3633 0.6164 -0.8223 21 1 -0.3633 -1.0203 -0.1226 22 1 -0.3633 0.4040 0.9450 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 0.5827 1.9547 -1.4226 26 1 1.8896 3.1336 -1.1572 27 1 1.3998 3.4081 -4.7542 28 1 1.6382 3.1892 1.0062 29 1 0.4733 1.8834 1.3317 30 1 4.0414 2.9141 1.8984 31 1 4.3927 1.5772 3.0195 32 1 4.1153 1.2418 1.2933 33 1 1.0385 -0.0461 2.4000 34 1 2.7901 -0.4224 2.3905 35 1 3.0453 0.1874 4.7095 36 1 1.4298 -0.5943 4.7120 37 1 1.6658 1.9115 5.6789 38 1 0.2833 1.5228 4.6096 39 1 2.7838 3.0979 4.0093 40 1 1.1443 3.2745 3.3234 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308467742.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:05 Heat of formation + Delta-G solvation = -12.738116 kcal Electronic energy + Delta-G solvation = -16712.479853 eV Core-core repulsion = 14333.502853 eV Total energy + Delta-G solvation = -2378.977000 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.28876 -36.23948 -32.58817 -31.29040 -29.44049 -28.38201 -27.04612 -25.31639 -23.86909 -22.71202 -20.48152 -19.42370 -18.24891 -16.12551 -15.46344 -15.09820 -14.91423 -14.30438 -13.97912 -13.47143 -13.08080 -12.86867 -12.39572 -12.21107 -11.80853 -11.79006 -11.24521 -11.15821 -10.98456 -10.89926 -10.82224 -10.77263 -10.52847 -10.35451 -10.20198 -10.10830 -9.91653 -9.82473 -9.44626 -9.05162 -8.37681 -7.03519 -5.97242 -3.97406 3.34316 3.40531 3.45022 4.46685 4.76274 4.86825 4.94173 5.19687 5.38686 5.60683 5.61188 5.63455 5.75350 5.79411 5.87151 5.88588 5.96823 6.02363 6.08292 6.19742 6.22133 6.26341 6.30886 6.34015 6.44155 6.48821 6.55943 6.71710 6.75989 6.79448 6.99148 7.00062 7.41182 7.50541 7.88055 8.19934 8.34524 8.66075 9.10380 9.66122 11.13572 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.043656 B = 0.006673 C = 0.006535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.223304 B = 4194.727316 C = 4283.462747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.044 3.956 3 N -0.528 5.528 4 C 0.189 3.811 5 C -0.500 4.500 6 H 0.061 0.939 7 C 0.053 3.947 8 N -0.901 5.901 9 Si 0.895 3.105 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.273 1.273 13 C 0.060 3.940 14 C -0.056 4.056 15 C -0.123 4.123 16 C -0.114 4.114 17 C -0.127 4.127 18 C -0.123 4.123 19 C -0.117 4.117 20 H 0.065 0.935 21 H 0.045 0.955 22 H 0.045 0.955 23 H 0.075 0.925 24 H 0.070 0.930 25 H -0.006 1.006 26 H 0.027 0.973 27 H 0.260 0.740 28 H 0.061 0.939 29 H 0.030 0.970 30 H 0.046 0.954 31 H 0.036 0.964 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.135 -3.931 14.233 14.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.085 4.085 3 N -0.251 5.251 4 C 0.064 3.936 5 C -0.539 4.539 6 H 0.080 0.920 7 C -0.147 4.147 8 N -0.541 5.541 9 Si 0.723 3.277 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.198 1.198 13 C -0.069 4.069 14 C -0.057 4.057 15 C -0.181 4.181 16 C -0.152 4.152 17 C -0.165 4.165 18 C -0.160 4.160 19 C -0.155 4.155 20 H 0.083 0.917 21 H 0.064 0.936 22 H 0.064 0.936 23 H 0.093 0.907 24 H 0.088 0.912 25 H 0.012 0.988 26 H 0.045 0.955 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.048 0.952 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.331 -3.805 14.095 14.603 hybrid contribution -0.536 -0.182 -0.989 1.140 sum -0.205 -3.987 13.106 13.701 Atomic orbital electron populations 1.22417 0.99953 1.01108 1.01398 1.22355 0.91798 0.92209 1.02110 1.62264 1.58403 1.01549 1.02885 1.19787 0.94544 0.94132 0.85182 1.21172 1.25410 1.15445 0.91864 0.92034 1.24981 0.95708 0.95163 0.98874 1.69964 1.38085 1.23961 1.22087 0.86539 0.80364 0.78655 0.82095 1.20861 1.21358 1.19835 1.22229 0.95594 0.98053 0.90990 1.21137 0.96561 0.94134 0.93819 1.21709 0.93773 1.01882 1.00711 1.22711 1.01646 0.96710 0.94085 1.22545 1.00173 0.96796 0.96969 1.22326 0.99843 0.95652 0.98199 1.22275 1.00384 0.97743 0.95127 0.91658 0.93566 0.93603 0.90691 0.91234 0.98830 0.95460 0.93070 0.92070 0.95190 0.93446 0.94528 0.90800 0.91320 0.91318 0.91925 0.92324 0.92418 0.92118 0.91999 0.92108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.40 8.89 37.16 0.33 -3.07 16 2 C 0.04 0.83 5.33 -3.82 -0.02 0.81 16 3 N -0.53 -11.16 3.59 -236.08 -0.85 -12.00 16 4 C 0.19 4.90 4.58 -4.97 -0.02 4.88 16 5 C -0.50 -14.08 8.53 -34.44 -0.29 -14.37 16 6 H 0.06 1.72 7.19 -52.48 -0.38 1.34 16 7 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.90 -27.03 13.29 55.43 0.74 -26.30 16 9 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 13 C 0.06 1.09 3.77 -3.83 -0.01 1.07 16 14 C -0.06 -0.83 0.75 -153.39 -0.11 -0.95 16 15 C -0.12 -1.91 7.91 37.15 0.29 -1.62 16 16 C -0.11 -1.56 3.91 -25.07 -0.10 -1.66 16 17 C -0.13 -1.46 6.91 -24.74 -0.17 -1.63 16 18 C -0.12 -1.38 6.83 -25.07 -0.17 -1.55 16 19 C -0.12 -1.51 6.11 -25.61 -0.16 -1.67 16 20 H 0.06 1.35 6.08 -51.93 -0.32 1.04 16 21 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.05 0.75 5.51 -51.93 -0.29 0.47 16 23 H 0.07 1.59 6.86 -51.93 -0.36 1.23 16 24 H 0.07 1.16 4.12 -51.93 -0.21 0.95 16 25 H -0.01 -0.16 5.97 -51.93 -0.31 -0.47 16 26 H 0.03 0.77 7.75 -51.93 -0.40 0.37 16 27 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.06 1.17 7.67 -51.93 -0.40 0.77 16 29 H 0.03 0.54 5.53 -51.93 -0.29 0.25 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 1.30 7.47 -51.93 -0.39 0.91 16 33 H 0.07 0.98 5.33 -51.93 -0.28 0.70 16 34 H 0.07 0.97 6.88 -51.93 -0.36 0.61 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.76 7.67 -51.93 -0.40 0.36 16 40 H 0.06 0.79 7.67 -51.93 -0.40 0.39 16 LS Contribution 293.73 15.07 4.43 4.43 Total: -1.00 -28.87 293.73 -8.10 -36.97 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -6.86 Total: -1.63 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: -0.54 Total: -18.32 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: -0.11 Total: -38.30 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.87 -8.10 -36.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308467742.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.234 kcal (2) G-P(sol) polarization free energy of solvation -28.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds