Wall clock time and date at job start Mon Mar 30 2020 03:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46897 * 109.46920 * 2 1 4 4 C 1.46904 * 111.00184 * 294.86687 * 3 2 1 5 5 C 1.50697 * 109.47040 * 291.41537 * 4 3 2 6 6 H 1.08004 * 120.00381 * 3.16695 * 5 4 3 7 7 C 1.37878 * 120.00205 * 183.17123 * 5 4 3 8 8 N 1.31522 * 119.99566 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00309 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47329 * 90.00039 * 9 7 5 11 11 H 1.48504 * 109.47166 * 209.99986 * 9 7 5 12 12 H 1.48495 * 109.47299 * 329.99550 * 9 7 5 13 13 C 1.46896 * 111.00389 * 58.82524 * 3 2 1 14 14 C 1.52997 * 109.47000 * 77.04835 * 13 3 2 15 15 C 1.52992 * 110.01929 * 53.13783 * 14 13 3 16 16 C 1.54272 * 110.03556 * 291.69220 * 14 13 3 17 17 C 1.54882 * 104.20077 * 217.10865 * 16 14 13 18 18 C 1.54894 * 102.74894 * 37.94042 * 17 16 14 19 19 C 1.53880 * 110.03235 * 174.53005 * 14 13 3 20 20 H 1.09000 * 109.47071 * 53.14611 * 1 2 3 21 21 H 1.09001 * 109.47029 * 173.14915 * 1 2 3 22 22 H 1.09000 * 109.46695 * 293.14619 * 1 2 3 23 23 H 1.08998 * 109.46837 * 239.99710 * 2 1 3 24 24 H 1.09000 * 109.46710 * 120.00044 * 2 1 3 25 25 H 1.09001 * 109.46589 * 51.40959 * 4 3 2 26 26 H 1.08996 * 109.47388 * 171.41330 * 4 3 2 27 27 H 0.97001 * 119.99943 * 179.97438 * 8 7 5 28 28 H 1.08996 * 109.47008 * 197.05101 * 13 3 2 29 29 H 1.08999 * 109.46716 * 317.04906 * 13 3 2 30 30 H 1.09003 * 109.47112 * 60.00101 * 15 14 13 31 31 H 1.09003 * 109.47298 * 179.97438 * 15 14 13 32 32 H 1.08999 * 109.47253 * 300.00063 * 15 14 13 33 33 H 1.09000 * 110.48371 * 335.79208 * 16 14 13 34 34 H 1.09003 * 110.48282 * 98.42764 * 16 14 13 35 35 H 1.09005 * 110.75426 * 279.63036 * 17 16 14 36 36 H 1.09000 * 110.75769 * 156.25990 * 17 16 14 37 37 H 1.09000 * 110.48848 * 203.37976 * 18 17 16 38 38 H 1.09005 * 110.59691 * 80.79339 * 18 17 16 39 39 H 1.08997 * 110.03219 * 238.56737 * 19 14 13 40 40 H 1.09003 * 110.02955 * 359.95254 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6514 2.0736 -1.2443 5 6 2.4218 1.4785 -2.3947 6 1 3.0771 0.6363 -2.2277 7 6 2.2903 2.0092 -3.6604 8 7 1.4921 3.0345 -3.8639 9 14 3.2458 1.2720 -5.0862 10 1 2.4384 0.1998 -5.7215 11 1 3.5377 2.3303 -6.0863 12 1 4.5210 0.7000 -4.5845 13 6 1.5259 2.1180 1.1733 14 6 2.3313 1.7070 2.4075 15 6 3.8277 1.8717 2.1351 16 6 2.0188 0.2427 2.7790 17 6 2.0253 0.2339 4.3278 18 6 1.3688 1.5919 4.6801 19 6 1.9180 2.5649 3.6163 20 1 -0.3633 0.6164 -0.8223 21 1 -0.3633 -1.0203 -0.1226 22 1 -0.3633 0.4040 0.9450 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 0.5827 1.9547 -1.4226 26 1 1.8896 3.1336 -1.1572 27 1 1.3998 3.4081 -4.7542 28 1 1.6382 3.1892 1.0062 29 1 0.4733 1.8834 1.3317 30 1 4.0414 2.9141 1.8984 31 1 4.3927 1.5772 3.0195 32 1 4.1153 1.2418 1.2933 33 1 1.0385 -0.0461 2.4000 34 1 2.7901 -0.4224 2.3905 35 1 3.0453 0.1874 4.7095 36 1 1.4298 -0.5943 4.7120 37 1 1.6658 1.9115 5.6789 38 1 0.2833 1.5228 4.6096 39 1 2.7838 3.0979 4.0093 40 1 1.1443 3.2745 3.3234 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308467742.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:04 Heat of formation + Delta-G solvation = -28.997809 kcal Electronic energy + Delta-G solvation = -16713.184926 eV Core-core repulsion = 14333.502853 eV Total energy + Delta-G solvation = -2379.682073 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.58944 -37.74731 -34.71436 -32.52485 -31.08230 -29.48038 -28.84482 -26.84003 -25.27037 -24.57533 -21.44920 -21.07772 -19.51566 -18.29443 -16.81675 -16.79401 -16.29389 -15.86219 -15.50347 -14.74691 -14.67368 -14.26035 -13.95506 -13.59108 -13.34713 -13.13294 -13.07025 -12.75032 -12.55505 -12.52892 -12.44507 -11.98513 -11.95863 -11.87159 -11.51442 -11.35134 -11.25892 -11.19331 -11.11540 -10.81791 -10.58043 -8.79752 -8.17694 -6.26868 1.39934 1.41420 1.52992 2.41094 3.13963 3.40961 3.76116 3.83741 3.98018 4.26926 4.36964 4.47514 4.52120 4.60440 4.61477 4.69688 4.77593 4.82819 4.85486 4.91164 5.00795 5.04516 5.07539 5.11190 5.20541 5.26669 5.26834 5.33050 5.40178 5.51203 5.52584 5.58325 5.61310 5.70441 5.73403 6.11907 6.48243 6.76221 6.90577 7.42253 8.92969 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.043656 B = 0.006673 C = 0.006535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.223304 B = 4194.727316 C = 4283.462747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.044 3.956 3 N -0.532 5.532 4 C 0.205 3.795 5 C -0.515 4.515 6 H 0.060 0.940 7 C -0.001 4.001 8 N -0.937 5.937 9 Si 0.967 3.033 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.265 1.265 13 C 0.061 3.939 14 C -0.054 4.054 15 C -0.119 4.119 16 C -0.116 4.116 17 C -0.120 4.120 18 C -0.118 4.118 19 C -0.116 4.116 20 H 0.029 0.971 21 H 0.070 0.930 22 H 0.062 0.938 23 H 0.051 0.949 24 H 0.101 0.899 25 H -0.029 1.029 26 H -0.007 1.007 27 H 0.263 0.737 28 H 0.040 0.960 29 H 0.033 0.967 30 H 0.035 0.965 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.377 -5.423 15.834 16.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.084 4.084 3 N -0.255 5.255 4 C 0.078 3.922 5 C -0.553 4.553 6 H 0.079 0.921 7 C -0.198 4.198 8 N -0.578 5.578 9 Si 0.792 3.208 10 H -0.199 1.199 11 H -0.209 1.209 12 H -0.190 1.190 13 C -0.067 4.067 14 C -0.054 4.054 15 C -0.176 4.176 16 C -0.153 4.153 17 C -0.157 4.157 18 C -0.156 4.156 19 C -0.154 4.154 20 H 0.048 0.952 21 H 0.089 0.911 22 H 0.080 0.920 23 H 0.070 0.930 24 H 0.119 0.881 25 H -0.012 1.012 26 H 0.011 0.989 27 H 0.071 0.929 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.842 -5.309 15.719 16.613 hybrid contribution -0.712 0.306 -1.446 1.641 sum 0.130 -5.003 14.274 15.126 Atomic orbital electron populations 1.22304 0.98845 1.01981 1.00768 1.22417 0.92724 0.90783 1.02441 1.62198 1.58907 1.02477 1.01879 1.19417 0.92838 0.92573 0.87342 1.21472 1.25496 1.15474 0.92899 0.92150 1.25901 0.96629 0.95489 1.01823 1.70098 1.39535 1.25323 1.22890 0.85415 0.79074 0.77967 0.78359 1.19860 1.20867 1.18971 1.22305 0.96478 0.96658 0.91237 1.21127 0.95485 0.95899 0.92916 1.21653 0.94559 1.00623 1.00806 1.22667 1.01157 0.95165 0.96293 1.22511 1.01094 0.97425 0.94669 1.22321 0.99954 0.94900 0.98394 1.22256 1.00697 0.97821 0.94656 0.95225 0.91124 0.91954 0.93030 0.88120 1.01182 0.98871 0.92868 0.94100 0.94871 0.94625 0.92031 0.93253 0.91749 0.91648 0.91069 0.90733 0.90517 0.91863 0.91170 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.38 8.89 71.98 0.64 -5.74 16 2 C 0.04 1.68 5.33 86.31 0.46 2.14 16 3 N -0.53 -23.07 3.59 -900.81 -3.24 -26.31 16 4 C 0.20 11.17 4.58 85.56 0.39 11.56 16 5 C -0.51 -29.83 8.53 25.60 0.22 -29.61 16 6 H 0.06 3.44 7.19 -2.91 -0.02 3.42 16 7 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 8 N -0.94 -57.79 13.29 21.45 0.28 -57.51 16 9 Si 0.97 45.30 29.54 68.60 2.03 47.33 16 10 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 12 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 13 C 0.06 2.26 3.77 86.30 0.32 2.59 16 14 C -0.05 -1.54 0.75 -51.46 -0.04 -1.58 16 15 C -0.12 -3.59 7.91 71.98 0.57 -3.02 16 16 C -0.12 -2.86 3.91 31.67 0.12 -2.74 16 17 C -0.12 -2.28 6.91 31.88 0.22 -2.06 16 18 C -0.12 -2.25 6.83 31.67 0.22 -2.04 16 19 C -0.12 -2.75 6.11 31.32 0.19 -2.56 16 20 H 0.03 1.25 6.08 -2.39 -0.01 1.23 16 21 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 22 H 0.06 1.98 5.51 -2.39 -0.01 1.96 16 23 H 0.05 2.20 6.86 -2.39 -0.02 2.18 16 24 H 0.10 3.22 4.12 -2.39 -0.01 3.21 16 25 H -0.03 -1.71 5.97 -2.39 -0.01 -1.73 16 26 H -0.01 -0.41 7.75 -2.39 -0.02 -0.43 16 27 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 28 H 0.04 1.64 7.67 -2.39 -0.02 1.62 16 29 H 0.03 1.19 5.53 -2.39 -0.01 1.18 16 30 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.05 1.72 7.47 -2.39 -0.02 1.70 16 33 H 0.06 1.66 5.33 -2.39 -0.01 1.65 16 34 H 0.06 1.67 6.88 -2.39 -0.02 1.65 16 35 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 39 H 0.07 1.55 7.67 -2.39 -0.02 1.54 16 40 H 0.05 1.36 7.67 -2.39 -0.02 1.35 16 Total: -1.00 -63.64 293.73 3.84 -59.79 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: 0.99 Total: 9.36 kcal Atomic # 6 Polarization: -36.45 SS G_CDS: 3.78 Total: -32.67 kcal Atomic # 7 Polarization: -80.86 SS G_CDS: -2.95 Total: -83.82 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.33 kcal Total: -63.64 3.84 -59.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308467742.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.795 kcal (2) G-P(sol) polarization free energy of solvation -63.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds