Wall clock time and date at job start Mon Mar 30 2020 02:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46874 * 2 1 4 4 C 1.52996 * 109.47399 * 120.00130 * 2 1 3 5 5 H 1.09003 * 110.54096 * 301.16118 * 4 2 1 6 6 C 1.54882 * 110.48812 * 178.54935 * 4 2 1 7 7 C 1.54897 * 102.74839 * 203.38054 * 6 4 2 8 8 C 1.54268 * 104.19359 * 37.94171 * 7 6 4 9 9 H 1.08998 * 110.02839 * 95.67999 * 8 7 6 10 10 N 1.46901 * 110.02909 * 217.10213 * 8 7 6 11 11 C 1.46897 * 111.00491 * 273.54915 * 10 8 7 12 12 H 1.09005 * 109.47023 * 34.99711 * 11 10 8 13 13 C 1.52997 * 109.47132 * 275.00167 * 11 10 8 14 14 C 1.50703 * 109.47207 * 155.00091 * 11 10 8 15 15 H 1.07999 * 119.99672 * 359.97438 * 14 11 10 16 16 C 1.37873 * 119.99452 * 180.02562 * 14 11 10 17 17 N 1.31512 * 120.00694 * 359.97438 * 16 14 11 18 18 Si 1.86806 * 119.99623 * 179.97438 * 16 14 11 19 19 H 1.48505 * 109.47011 * 89.99709 * 18 16 14 20 20 H 1.48498 * 109.47178 * 209.99829 * 18 16 14 21 21 H 1.48499 * 109.47060 * 330.00082 * 18 16 14 22 22 C 1.53876 * 106.59992 * 336.38989 * 8 7 6 23 23 H 1.08994 * 109.47565 * 299.99575 * 1 2 3 24 24 H 1.09004 * 109.47388 * 59.99895 * 1 2 3 25 25 H 1.09006 * 109.47190 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47387 * 240.00360 * 2 1 3 27 27 H 1.09003 * 109.46819 * 60.00012 * 3 2 1 28 28 H 1.08995 * 109.47124 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.46995 * 300.00162 * 3 2 1 30 30 H 1.08994 * 110.76048 * 85.06728 * 6 4 2 31 31 H 1.09004 * 110.75771 * 321.69122 * 6 4 2 32 32 H 1.08999 * 110.48266 * 156.62203 * 7 6 4 33 33 H 1.08996 * 110.48675 * 279.26281 * 7 6 4 34 34 H 1.00897 * 110.99880 * 149.59025 * 10 8 7 35 35 H 1.08997 * 109.47251 * 179.97438 * 13 11 10 36 36 H 1.09003 * 109.47201 * 300.00334 * 13 11 10 37 37 H 1.09009 * 109.47141 * 59.99692 * 13 11 10 38 38 H 0.96997 * 120.00200 * 180.02562 * 17 16 14 39 39 H 1.08994 * 110.02975 * 119.28475 * 22 8 7 40 40 H 1.09000 * 110.03018 * 240.67159 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6696 -0.2332 2.1507 6 6 3.5882 -0.7668 1.2547 7 6 3.8911 -1.9811 2.1674 8 6 2.7948 -3.0059 1.8099 9 1 3.1706 -3.7113 1.0689 10 7 2.3650 -3.7245 3.0169 11 6 3.2264 -4.8866 3.2726 12 1 4.2495 -4.6523 2.9784 13 6 2.7237 -6.0824 2.4612 14 6 3.1908 -5.2251 4.7407 15 1 2.5888 -4.6355 5.4163 16 6 3.9276 -6.2867 5.2214 17 7 4.6610 -7.0043 4.3988 18 14 3.8840 -6.7058 7.0413 19 1 2.7862 -7.6716 7.3007 20 1 5.1801 -7.3104 7.4412 21 1 3.6511 -5.4685 7.8287 22 6 1.6178 -2.2048 1.2261 23 1 -0.3634 0.5137 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.6765 1.9563 0.8900 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9563 -0.8899 30 1 4.0001 0.1483 1.6799 31 1 3.9733 -0.9342 0.2488 32 1 4.8787 -2.3865 1.9475 33 1 3.8196 -1.6965 3.2171 34 1 1.3969 -4.0002 2.9481 35 1 3.3632 -6.9446 2.6506 36 1 1.7006 -6.3167 2.7553 37 1 2.7495 -5.8376 1.3993 38 1 5.1791 -7.7513 4.7370 39 1 1.4224 -2.5215 0.2017 40 1 0.7275 -2.3500 1.8379 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308492783.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:20 Heat of formation + Delta-G solvation = -33.748994 kcal Electronic energy + Delta-G solvation = -16122.636827 eV Core-core repulsion = 13742.748728 eV Total energy + Delta-G solvation = -2379.888100 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.81750 -35.83496 -33.67605 -31.72985 -28.92635 -27.91701 -26.88190 -25.31008 -24.89630 -21.45669 -20.36950 -19.54367 -19.03972 -16.23604 -15.32476 -15.19337 -14.55568 -14.51497 -13.55213 -13.43824 -13.07059 -12.91928 -12.46142 -12.34581 -12.18273 -11.67025 -11.44425 -11.12738 -11.05025 -10.83959 -10.79817 -10.60140 -10.41738 -10.30625 -10.21707 -10.15751 -10.12083 -9.97755 -9.63690 -8.89264 -8.31239 -7.13161 -5.93312 -3.96191 3.35447 3.41636 3.46569 4.48338 4.77959 4.82413 4.90657 5.18660 5.28442 5.37882 5.38742 5.59751 5.60951 5.72232 5.80209 5.82910 5.85910 5.99784 6.04436 6.09210 6.15487 6.19015 6.26315 6.37339 6.42002 6.51073 6.66529 6.73524 6.75790 6.89108 6.91977 7.18173 7.50227 7.79696 7.96280 8.36516 8.64009 8.72547 9.11526 9.69087 11.13787 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.050083 B = 0.005407 C = 0.005331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.941766 B = 5177.181222 C = 5251.511577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 C -0.146 4.146 4 C -0.081 4.081 5 H 0.073 0.927 6 C -0.118 4.118 7 C -0.111 4.111 8 C 0.083 3.917 9 H 0.034 0.966 10 N -0.678 5.678 11 C 0.210 3.790 12 H 0.033 0.967 13 C -0.168 4.168 14 C -0.492 4.492 15 H 0.061 0.939 16 C 0.054 3.946 17 N -0.899 5.899 18 Si 0.896 3.104 19 H -0.283 1.283 20 H -0.288 1.288 21 H -0.274 1.274 22 C -0.118 4.118 23 H 0.053 0.947 24 H 0.048 0.952 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.323 0.677 35 H 0.088 0.912 36 H 0.026 0.974 37 H 0.003 0.997 38 H 0.258 0.742 39 H 0.056 0.944 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.156 12.264 -8.693 15.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.108 4.108 3 C -0.204 4.204 4 C -0.100 4.100 5 H 0.092 0.908 6 C -0.156 4.156 7 C -0.149 4.149 8 C -0.027 4.027 9 H 0.052 0.948 10 N -0.309 5.309 11 C 0.103 3.897 12 H 0.051 0.949 13 C -0.228 4.228 14 C -0.531 4.531 15 H 0.080 0.920 16 C -0.146 4.146 17 N -0.539 5.539 18 Si 0.724 3.276 19 H -0.209 1.209 20 H -0.214 1.214 21 H -0.199 1.199 22 C -0.156 4.156 23 H 0.072 0.928 24 H 0.067 0.933 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.140 0.860 35 H 0.106 0.894 36 H 0.045 0.955 37 H 0.022 0.978 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.681 12.517 -8.250 15.705 hybrid contribution -0.252 -1.072 0.225 1.124 sum -4.933 11.445 -8.025 14.823 Atomic orbital electron populations 1.21851 0.95599 1.01801 1.01190 1.21181 0.95445 0.95959 0.98253 1.21847 1.01172 0.96161 1.01192 1.21967 0.95541 0.95324 0.97176 0.90849 1.22545 0.95160 0.98333 0.99524 1.22390 0.97849 0.94395 1.00255 1.22058 0.94269 0.94709 0.91712 0.94830 1.60971 1.06166 1.29245 1.34472 1.19185 0.91859 0.83663 0.95038 0.94905 1.22433 1.00390 1.04615 0.95332 1.21181 1.26734 1.12448 0.92755 0.92044 1.24951 0.95575 0.96324 0.97744 1.69886 1.30011 1.19794 1.34191 0.86533 0.77109 0.78450 0.85494 1.20900 1.21423 1.19908 1.22401 0.98546 0.94624 0.99980 0.92821 0.93297 0.92517 0.91515 0.92864 0.92540 0.93287 0.92173 0.92194 0.92637 0.90445 0.85984 0.89385 0.95463 0.97756 0.93167 0.92561 0.91576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.01 37.16 0.33 -1.14 16 2 C -0.09 -0.97 2.31 -90.62 -0.21 -1.18 16 3 C -0.15 -1.41 8.98 37.16 0.33 -1.07 16 4 C -0.08 -1.05 2.42 -88.97 -0.22 -1.27 16 5 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 6 C -0.12 -1.59 5.28 -24.74 -0.13 -1.72 16 7 C -0.11 -1.91 6.33 -25.07 -0.16 -2.07 16 8 C 0.08 1.52 3.03 -66.59 -0.20 1.32 16 9 H 0.03 0.66 7.17 -51.93 -0.37 0.29 16 10 N -0.68 -14.64 5.99 -99.78 -0.60 -15.23 16 11 C 0.21 5.39 2.41 -68.87 -0.17 5.22 16 12 H 0.03 0.93 7.73 -51.93 -0.40 0.53 16 13 C -0.17 -4.15 8.92 37.16 0.33 -3.82 16 14 C -0.49 -13.86 8.84 -34.44 -0.30 -14.16 16 15 H 0.06 1.75 7.81 -52.49 -0.41 1.34 16 16 C 0.05 1.53 5.30 -17.82 -0.09 1.43 16 17 N -0.90 -26.14 11.32 55.43 0.63 -25.52 16 18 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 22 C -0.12 -1.73 5.08 -25.61 -0.13 -1.86 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.59 7.34 -51.93 -0.38 0.21 16 26 H 0.07 0.73 8.11 -51.93 -0.42 0.31 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.54 7.20 -51.93 -0.37 0.16 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.75 7.99 -51.93 -0.41 0.33 16 31 H 0.06 0.77 8.06 -51.93 -0.42 0.35 16 32 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.08 1.46 8.05 -51.93 -0.42 1.05 16 34 H 0.32 6.66 7.79 -39.29 -0.31 6.35 16 35 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 36 H 0.03 0.64 8.13 -51.93 -0.42 0.22 16 37 H 0.00 0.08 7.45 -51.92 -0.39 -0.31 16 38 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 39 H 0.06 0.77 7.74 -51.93 -0.40 0.37 16 40 H 0.07 0.98 7.49 -51.93 -0.39 0.59 16 LS Contribution 307.37 15.07 4.63 4.63 Total: -1.00 -28.32 307.37 -8.47 -36.80 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -7.50 Total: 2.86 kcal Atomic # 6 Polarization: -19.71 SS G_CDS: -0.61 Total: -20.32 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 0.03 Total: -40.75 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.32 -8.47 -36.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308492783.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.048 kcal (2) G-P(sol) polarization free energy of solvation -28.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds