Wall clock time and date at job start Mon Mar 30 2020 02:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46874 * 2 1 4 4 C 1.52996 * 109.47399 * 120.00130 * 2 1 3 5 5 H 1.09003 * 110.54096 * 301.16118 * 4 2 1 6 6 C 1.54882 * 110.48812 * 178.54935 * 4 2 1 7 7 C 1.54897 * 102.74839 * 203.38054 * 6 4 2 8 8 C 1.54268 * 104.19359 * 37.94171 * 7 6 4 9 9 H 1.08998 * 110.02839 * 95.67999 * 8 7 6 10 10 N 1.46901 * 110.02909 * 217.10213 * 8 7 6 11 11 C 1.46897 * 111.00491 * 273.54915 * 10 8 7 12 12 H 1.09005 * 109.47023 * 34.99711 * 11 10 8 13 13 C 1.52997 * 109.47132 * 275.00167 * 11 10 8 14 14 C 1.50703 * 109.47207 * 155.00091 * 11 10 8 15 15 H 1.07999 * 119.99672 * 359.97438 * 14 11 10 16 16 C 1.37873 * 119.99452 * 180.02562 * 14 11 10 17 17 N 1.31512 * 120.00694 * 359.97438 * 16 14 11 18 18 Si 1.86806 * 119.99623 * 179.97438 * 16 14 11 19 19 H 1.48505 * 109.47011 * 89.99709 * 18 16 14 20 20 H 1.48498 * 109.47178 * 209.99829 * 18 16 14 21 21 H 1.48499 * 109.47060 * 330.00082 * 18 16 14 22 22 C 1.53876 * 106.59992 * 336.38989 * 8 7 6 23 23 H 1.08994 * 109.47565 * 299.99575 * 1 2 3 24 24 H 1.09004 * 109.47388 * 59.99895 * 1 2 3 25 25 H 1.09006 * 109.47190 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47387 * 240.00360 * 2 1 3 27 27 H 1.09003 * 109.46819 * 60.00012 * 3 2 1 28 28 H 1.08995 * 109.47124 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.46995 * 300.00162 * 3 2 1 30 30 H 1.08994 * 110.76048 * 85.06728 * 6 4 2 31 31 H 1.09004 * 110.75771 * 321.69122 * 6 4 2 32 32 H 1.08999 * 110.48266 * 156.62203 * 7 6 4 33 33 H 1.08996 * 110.48675 * 279.26281 * 7 6 4 34 34 H 1.00897 * 110.99880 * 149.59025 * 10 8 7 35 35 H 1.08997 * 109.47251 * 179.97438 * 13 11 10 36 36 H 1.09003 * 109.47201 * 300.00334 * 13 11 10 37 37 H 1.09009 * 109.47141 * 59.99692 * 13 11 10 38 38 H 0.96997 * 120.00200 * 180.02562 * 17 16 14 39 39 H 1.08994 * 110.02975 * 119.28475 * 22 8 7 40 40 H 1.09000 * 110.03018 * 240.67159 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6696 -0.2332 2.1507 6 6 3.5882 -0.7668 1.2547 7 6 3.8911 -1.9811 2.1674 8 6 2.7948 -3.0059 1.8099 9 1 3.1706 -3.7113 1.0689 10 7 2.3650 -3.7245 3.0169 11 6 3.2264 -4.8866 3.2726 12 1 4.2495 -4.6523 2.9784 13 6 2.7237 -6.0824 2.4612 14 6 3.1908 -5.2251 4.7407 15 1 2.5888 -4.6355 5.4163 16 6 3.9276 -6.2867 5.2214 17 7 4.6610 -7.0043 4.3988 18 14 3.8840 -6.7058 7.0413 19 1 2.7862 -7.6716 7.3007 20 1 5.1801 -7.3104 7.4412 21 1 3.6511 -5.4685 7.8287 22 6 1.6178 -2.2048 1.2261 23 1 -0.3634 0.5137 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.6765 1.9563 0.8900 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9563 -0.8899 30 1 4.0001 0.1483 1.6799 31 1 3.9733 -0.9342 0.2488 32 1 4.8787 -2.3865 1.9475 33 1 3.8196 -1.6965 3.2171 34 1 1.3969 -4.0002 2.9481 35 1 3.3632 -6.9446 2.6506 36 1 1.7006 -6.3167 2.7553 37 1 2.7495 -5.8376 1.3993 38 1 5.1791 -7.7513 4.7370 39 1 1.4224 -2.5215 0.2017 40 1 0.7275 -2.3500 1.8379 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308492783.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:20 Heat of formation + Delta-G solvation = -49.589201 kcal Electronic energy + Delta-G solvation = -16123.323710 eV Core-core repulsion = 13742.748728 eV Total energy + Delta-G solvation = -2380.574983 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.06633 -37.40508 -35.20387 -33.53279 -30.44869 -29.25774 -27.79447 -27.27141 -26.51338 -22.59735 -22.16148 -20.84122 -20.29487 -18.31801 -16.94461 -16.45331 -16.24215 -15.83371 -14.99778 -14.70549 -14.47045 -14.14240 -13.86017 -13.82567 -13.40364 -12.97182 -12.92197 -12.86213 -12.64505 -12.33304 -12.21940 -12.18753 -12.05127 -11.78426 -11.57587 -11.54369 -11.30914 -11.21043 -11.11603 -10.91341 -10.48465 -8.92176 -8.09183 -6.20503 1.42525 1.43089 1.54476 2.44309 3.18866 3.64861 3.69972 3.80227 3.91668 4.25556 4.38685 4.50266 4.58664 4.67663 4.70184 4.77258 4.78605 4.85990 4.87595 4.93143 5.02966 5.03997 5.08168 5.11187 5.16736 5.21716 5.32006 5.34558 5.38892 5.47134 5.54223 5.56917 5.68761 5.70615 5.85713 6.29926 6.69597 6.89311 6.97709 7.49843 8.96512 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.050083 B = 0.005407 C = 0.005331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.941766 B = 5177.181222 C = 5251.511577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.086 4.086 3 C -0.145 4.145 4 C -0.075 4.075 5 H 0.069 0.931 6 C -0.106 4.106 7 C -0.113 4.113 8 C 0.078 3.922 9 H 0.018 0.982 10 N -0.681 5.681 11 C 0.217 3.783 12 H -0.002 1.002 13 C -0.155 4.155 14 C -0.514 4.514 15 H 0.053 0.947 16 C 0.007 3.993 17 N -0.924 5.924 18 Si 0.961 3.039 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.271 1.271 22 C -0.109 4.109 23 H 0.053 0.947 24 H 0.062 0.938 25 H 0.051 0.949 26 H 0.068 0.932 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.040 0.960 33 H 0.056 0.944 34 H 0.329 0.671 35 H 0.060 0.940 36 H 0.032 0.968 37 H 0.021 0.979 38 H 0.260 0.740 39 H 0.069 0.931 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.122 13.503 -9.093 17.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.104 4.104 3 C -0.202 4.202 4 C -0.094 4.094 5 H 0.087 0.913 6 C -0.144 4.144 7 C -0.152 4.152 8 C -0.032 4.032 9 H 0.036 0.964 10 N -0.311 5.311 11 C 0.108 3.892 12 H 0.016 0.984 13 C -0.215 4.215 14 C -0.553 4.553 15 H 0.072 0.928 16 C -0.191 4.191 17 N -0.565 5.565 18 Si 0.787 3.213 19 H -0.200 1.200 20 H -0.210 1.210 21 H -0.195 1.195 22 C -0.147 4.147 23 H 0.072 0.928 24 H 0.081 0.919 25 H 0.070 0.930 26 H 0.087 0.913 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.147 0.853 35 H 0.079 0.921 36 H 0.051 0.949 37 H 0.040 0.960 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.658 13.770 -8.660 17.223 hybrid contribution 0.070 -1.453 0.324 1.490 sum -5.589 12.318 -8.336 15.889 Atomic orbital electron populations 1.21846 0.94918 1.01709 1.01914 1.21138 0.95988 0.96462 0.96815 1.21834 1.01210 0.95286 1.01908 1.21925 0.94863 0.94181 0.98394 0.91253 1.22493 0.95855 0.96911 0.99130 1.22361 0.96866 0.95959 0.99972 1.22193 0.96203 0.94650 0.90158 0.96436 1.60873 1.05938 1.27610 1.36678 1.18917 0.90834 0.85291 0.94127 0.98424 1.22240 0.99859 1.03063 0.96317 1.21466 1.27011 1.12757 0.94018 0.92823 1.25738 0.95088 0.96134 1.02092 1.70016 1.30397 1.20058 1.36008 0.85509 0.77329 0.78260 0.80209 1.20013 1.20962 1.19549 1.22330 0.96725 0.95313 1.00301 0.92805 0.91929 0.93032 0.91323 0.92790 0.92500 0.91996 0.90695 0.91048 0.94150 0.92519 0.85335 0.92069 0.94891 0.95982 0.93053 0.91203 0.91573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.01 71.98 0.65 -1.89 16 2 C -0.09 -1.60 2.31 -10.79 -0.02 -1.63 16 3 C -0.15 -2.35 8.98 71.98 0.65 -1.70 16 4 C -0.07 -1.78 2.42 -9.72 -0.02 -1.81 16 5 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 6 C -0.11 -2.70 5.28 31.89 0.17 -2.53 16 7 C -0.11 -3.95 6.33 31.67 0.20 -3.75 16 8 C 0.08 2.86 3.03 45.64 0.14 3.00 16 9 H 0.02 0.70 7.17 -2.39 -0.02 0.68 16 10 N -0.68 -29.71 5.99 -469.59 -2.81 -32.53 16 11 C 0.22 11.39 2.41 44.17 0.11 11.50 16 12 H 0.00 -0.13 7.73 -2.38 -0.02 -0.15 16 13 C -0.16 -7.76 8.92 71.98 0.64 -7.12 16 14 C -0.51 -29.39 8.84 25.60 0.23 -29.16 16 15 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 16 C 0.01 0.41 5.30 84.65 0.45 0.86 16 17 N -0.92 -54.59 11.32 21.45 0.24 -54.35 16 18 Si 0.96 44.87 29.54 68.60 2.03 46.90 16 19 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 20 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 21 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 22 C -0.11 -3.04 5.08 31.32 0.16 -2.88 16 23 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.05 0.94 7.34 -2.38 -0.02 0.92 16 26 H 0.07 1.29 8.11 -2.39 -0.02 1.27 16 27 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.06 0.92 7.20 -2.39 -0.02 0.90 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.07 1.71 7.99 -2.39 -0.02 1.69 16 31 H 0.07 1.68 8.06 -2.38 -0.02 1.66 16 32 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.06 2.19 8.05 -2.39 -0.02 2.17 16 34 H 0.33 13.51 7.79 -89.70 -0.70 12.81 16 35 H 0.06 3.40 6.07 -2.39 -0.01 3.38 16 36 H 0.03 1.55 8.13 -2.39 -0.02 1.53 16 37 H 0.02 0.97 7.45 -2.38 -0.02 0.95 16 38 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 39 H 0.07 1.78 7.74 -2.39 -0.02 1.76 16 40 H 0.07 1.86 7.49 -2.39 -0.02 1.84 16 Total: -1.00 -60.81 307.37 3.07 -57.73 By element: Atomic # 1 Polarization: 19.07 SS G_CDS: 0.28 Total: 19.35 kcal Atomic # 6 Polarization: -40.45 SS G_CDS: 3.34 Total: -37.11 kcal Atomic # 7 Polarization: -84.31 SS G_CDS: -2.57 Total: -86.87 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -60.81 3.07 -57.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308492783.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.146 kcal (2) G-P(sol) polarization free energy of solvation -60.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds