Wall clock time and date at job start Mon Mar 30 2020 02:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 H 1.08997 * 110.67006 * 299.29979 * 4 2 1 6 6 C 1.54889 * 110.75607 * 176.06594 * 4 2 1 7 7 C 1.54458 * 104.10277 * 203.89212 * 6 4 2 8 8 C 1.53876 * 106.68371 * 23.34361 * 7 6 4 9 9 H 1.09007 * 110.03392 * 240.87250 * 8 7 6 10 10 N 1.46897 * 110.03339 * 119.44327 * 8 7 6 11 11 C 1.46905 * 111.00027 * 87.83247 * 10 8 7 12 12 H 1.09000 * 109.47193 * 35.00287 * 11 10 8 13 13 C 1.52995 * 109.47156 * 274.99759 * 11 10 8 14 14 C 1.50702 * 109.46762 * 154.99946 * 11 10 8 15 15 H 1.08000 * 120.00312 * 0.02562 * 14 11 10 16 16 C 1.37879 * 119.99444 * 179.97438 * 14 11 10 17 17 N 1.31505 * 120.00244 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 119.99780 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.47415 * 89.99937 * 18 16 14 20 20 H 1.48497 * 109.47583 * 210.00104 * 18 16 14 21 21 H 1.48504 * 109.47115 * 329.99965 * 18 16 14 22 22 C 1.54266 * 106.59904 * 0.15524 * 8 7 6 23 23 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 24 24 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 26 26 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 27 27 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 28 28 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 29 29 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 30 30 H 1.09000 * 110.48358 * 322.42355 * 6 4 2 31 31 H 1.09000 * 110.48628 * 85.06374 * 6 4 2 32 32 H 1.09003 * 109.86134 * 264.10493 * 7 6 4 33 33 H 1.09003 * 110.12565 * 142.72458 * 7 6 4 34 34 H 1.00905 * 111.00302 * 211.78535 * 10 8 7 35 35 H 1.09000 * 109.47500 * 300.00340 * 13 11 10 36 36 H 1.09000 * 109.46915 * 60.00017 * 13 11 10 37 37 H 1.08994 * 109.47120 * 179.97438 * 13 11 10 38 38 H 0.97007 * 120.00340 * 180.02562 * 17 16 14 39 39 H 1.08997 * 110.48658 * 217.71035 * 22 8 7 40 40 H 1.09007 * 110.48560 * 95.07199 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6978 -0.2157 2.1521 6 6 3.5853 -0.8253 1.2305 7 6 3.8920 -2.0374 2.1375 8 6 2.6256 -2.9114 2.1499 9 1 2.2389 -2.9942 3.1657 10 7 2.9299 -4.2458 1.6164 11 6 3.3999 -5.1434 2.6801 12 1 2.8773 -4.9119 3.6082 13 6 4.9046 -4.9525 2.8807 14 6 3.1223 -6.5725 2.2904 15 1 2.6450 -6.7920 1.3469 16 6 3.4788 -7.5998 3.1382 17 7 4.0605 -7.3325 4.2869 18 14 3.1342 -9.3711 2.6556 19 1 4.2966 -9.9160 1.9091 20 1 2.9071 -10.1823 3.8786 21 1 1.9248 -9.4235 1.7953 22 6 1.5933 -2.2043 1.2476 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.6767 1.9564 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 3.9431 -1.0086 0.2174 31 1 4.0336 0.0817 1.6362 32 1 4.1199 -1.6960 3.1473 33 1 4.7323 -2.6034 1.7356 34 1 2.1301 -4.6362 1.1410 35 1 5.4272 -5.1841 1.9526 36 1 5.1053 -3.9189 3.1625 37 1 5.2532 -5.6182 3.6702 38 1 4.3117 -8.0553 4.8832 39 1 0.5913 -2.3014 1.6656 40 1 1.6271 -2.6119 0.2372 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308492784.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:22 Heat of formation + Delta-G solvation = -33.936304 kcal Electronic energy + Delta-G solvation = -16139.670159 eV Core-core repulsion = 13759.773937 eV Total energy + Delta-G solvation = -2379.896222 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.78976 -35.79351 -33.63932 -31.68027 -29.07708 -27.78866 -26.96981 -25.63924 -24.74339 -21.45616 -20.08326 -19.50875 -18.96423 -16.39999 -15.58192 -14.95094 -14.79971 -14.34323 -13.65292 -13.31896 -13.17640 -12.80734 -12.72975 -12.21660 -12.16783 -11.46991 -11.40761 -11.28911 -10.97708 -10.89177 -10.85110 -10.62125 -10.41902 -10.28524 -10.19000 -10.14182 -9.99205 -9.83176 -9.61988 -8.73546 -8.41941 -7.20643 -5.98852 -4.05301 3.31562 3.37765 3.40812 4.42748 4.77414 4.80039 4.91791 5.18964 5.31827 5.36980 5.38828 5.54712 5.61342 5.66856 5.81449 5.84556 5.92886 5.97035 6.00387 6.08914 6.14619 6.20731 6.27830 6.36046 6.44150 6.52814 6.69813 6.74454 6.86222 6.97418 7.22104 7.32237 7.60973 7.82871 7.97119 8.33408 8.48062 8.76170 9.06898 9.60590 11.07182 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.050775 B = 0.005501 C = 0.005138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.318665 B = 5088.625497 C = 5447.854806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 C -0.146 4.146 4 C -0.085 4.085 5 H 0.069 0.931 6 C -0.114 4.114 7 C -0.115 4.115 8 C 0.084 3.916 9 H 0.035 0.965 10 N -0.682 5.682 11 C 0.211 3.789 12 H -0.001 1.001 13 C -0.126 4.126 14 C -0.518 4.518 15 H 0.059 0.941 16 C 0.061 3.939 17 N -0.890 5.890 18 Si 0.896 3.104 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.119 4.119 23 H 0.049 0.951 24 H 0.057 0.943 25 H 0.051 0.949 26 H 0.069 0.931 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.049 0.951 33 H 0.079 0.921 34 H 0.329 0.671 35 H 0.029 0.971 36 H 0.010 0.990 37 H 0.077 0.923 38 H 0.260 0.740 39 H 0.056 0.944 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.203 13.933 -5.975 15.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.107 4.107 3 C -0.203 4.203 4 C -0.104 4.104 5 H 0.088 0.912 6 C -0.152 4.152 7 C -0.153 4.153 8 C -0.027 4.027 9 H 0.053 0.947 10 N -0.314 5.314 11 C 0.104 3.896 12 H 0.017 0.983 13 C -0.184 4.184 14 C -0.556 4.556 15 H 0.077 0.923 16 C -0.140 4.140 17 N -0.529 5.529 18 Si 0.724 3.276 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.157 4.157 23 H 0.068 0.932 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.088 0.912 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.068 0.932 33 H 0.098 0.902 34 H 0.147 0.853 35 H 0.048 0.952 36 H 0.029 0.971 37 H 0.096 0.904 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.494 13.994 -5.997 15.621 hybrid contribution -0.939 -1.213 0.375 1.579 sum -4.433 12.781 -5.622 14.650 Atomic orbital electron populations 1.21853 0.95630 1.01856 1.01108 1.21124 0.95389 0.95851 0.98328 1.21843 1.01172 0.96191 1.01139 1.22117 0.95763 0.95426 0.97106 0.91229 1.22418 0.94900 0.97723 1.00111 1.22328 0.99313 0.95291 0.98362 1.22123 0.93490 0.91179 0.95870 0.94730 1.60885 1.37984 1.01863 1.30629 1.19156 0.92649 0.90081 0.87760 0.98332 1.21785 0.98358 0.97426 1.00878 1.21304 1.39310 0.90875 1.04142 0.92326 1.24919 0.95088 0.99123 0.94900 1.69903 1.41263 1.32003 1.09764 0.86542 0.78636 0.84632 0.77825 1.20652 1.21319 1.19976 1.22618 0.97951 0.94562 1.00539 0.93237 0.92416 0.93000 0.91224 0.93230 0.92998 0.92558 0.91856 0.92636 0.93180 0.90195 0.85327 0.95201 0.97096 0.90440 0.93006 0.92523 0.90958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.00 37.16 0.33 -1.15 16 2 C -0.09 -0.96 2.42 -90.62 -0.22 -1.18 16 3 C -0.15 -1.40 9.01 37.16 0.33 -1.07 16 4 C -0.09 -1.09 2.43 -88.63 -0.22 -1.30 16 5 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 6 C -0.11 -1.55 5.38 -24.97 -0.13 -1.69 16 7 C -0.11 -1.94 5.26 -25.51 -0.13 -2.08 16 8 C 0.08 1.55 3.24 -66.60 -0.22 1.33 16 9 H 0.03 0.70 7.44 -51.93 -0.39 0.31 16 10 N -0.68 -14.82 6.01 -99.78 -0.60 -15.42 16 11 C 0.21 5.46 2.60 -68.86 -0.18 5.28 16 12 H 0.00 -0.03 7.43 -51.93 -0.39 -0.41 16 13 C -0.13 -3.20 8.60 37.15 0.32 -2.88 16 14 C -0.52 -14.44 8.59 -34.44 -0.30 -14.74 16 15 H 0.06 1.61 7.62 -52.49 -0.40 1.21 16 16 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 17 N -0.89 -25.86 11.32 55.43 0.63 -25.23 16 18 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 C -0.12 -1.76 4.72 -25.08 -0.12 -1.88 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.61 7.26 -51.93 -0.38 0.23 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.54 7.31 -51.93 -0.38 0.16 16 30 H 0.06 0.87 8.04 -51.93 -0.42 0.45 16 31 H 0.05 0.68 8.00 -51.93 -0.42 0.26 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.08 1.51 6.57 -51.93 -0.34 1.17 16 34 H 0.33 7.01 7.81 -39.29 -0.31 6.71 16 35 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.01 0.24 6.02 -51.93 -0.31 -0.08 16 37 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 38 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 39 H 0.06 0.81 8.00 -51.93 -0.42 0.39 16 40 H 0.07 1.09 7.87 -51.92 -0.41 0.68 16 LS Contribution 303.64 15.07 4.58 4.58 Total: -1.00 -28.24 303.64 -8.41 -36.66 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -7.38 Total: 2.65 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: -0.62 Total: -19.73 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: 0.03 Total: -40.65 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -28.24 -8.41 -36.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308492784.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.719 kcal (2) G-P(sol) polarization free energy of solvation -28.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds