Wall clock time and date at job start Mon Mar 30 2020 02:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46626 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00297 * 2 1 3 5 5 H 1.08997 * 110.67006 * 299.29979 * 4 2 1 6 6 C 1.54889 * 110.75607 * 176.06594 * 4 2 1 7 7 C 1.54458 * 104.10277 * 203.89212 * 6 4 2 8 8 C 1.53876 * 106.68371 * 23.34361 * 7 6 4 9 9 H 1.09007 * 110.03392 * 240.87250 * 8 7 6 10 10 N 1.46897 * 110.03339 * 119.44327 * 8 7 6 11 11 C 1.46905 * 111.00027 * 87.83247 * 10 8 7 12 12 H 1.09000 * 109.47193 * 35.00287 * 11 10 8 13 13 C 1.52995 * 109.47156 * 274.99759 * 11 10 8 14 14 C 1.50702 * 109.46762 * 154.99946 * 11 10 8 15 15 H 1.08000 * 120.00312 * 0.02562 * 14 11 10 16 16 C 1.37879 * 119.99444 * 179.97438 * 14 11 10 17 17 N 1.31505 * 120.00244 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 119.99780 * 179.97438 * 16 14 11 19 19 H 1.48502 * 109.47415 * 89.99937 * 18 16 14 20 20 H 1.48497 * 109.47583 * 210.00104 * 18 16 14 21 21 H 1.48504 * 109.47115 * 329.99965 * 18 16 14 22 22 C 1.54266 * 106.59904 * 0.15524 * 8 7 6 23 23 H 1.09001 * 109.46801 * 59.99811 * 1 2 3 24 24 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47050 * 299.99699 * 1 2 3 26 26 H 1.09000 * 109.47050 * 240.00301 * 2 1 3 27 27 H 1.08993 * 109.47839 * 299.99931 * 3 2 1 28 28 H 1.09000 * 109.47160 * 60.00369 * 3 2 1 29 29 H 1.09002 * 109.46719 * 180.02562 * 3 2 1 30 30 H 1.09000 * 110.48358 * 322.42355 * 6 4 2 31 31 H 1.09000 * 110.48628 * 85.06374 * 6 4 2 32 32 H 1.09003 * 109.86134 * 264.10493 * 7 6 4 33 33 H 1.09003 * 110.12565 * 142.72458 * 7 6 4 34 34 H 1.00905 * 111.00302 * 211.78535 * 10 8 7 35 35 H 1.09000 * 109.47500 * 300.00340 * 13 11 10 36 36 H 1.09000 * 109.46915 * 60.00017 * 13 11 10 37 37 H 1.08994 * 109.47120 * 179.97438 * 13 11 10 38 38 H 0.97007 * 120.00340 * 180.02562 * 17 16 14 39 39 H 1.08997 * 110.48658 * 217.71035 * 22 8 7 40 40 H 1.09007 * 110.48560 * 95.07199 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 1 1.6978 -0.2157 2.1521 6 6 3.5853 -0.8253 1.2305 7 6 3.8920 -2.0374 2.1375 8 6 2.6256 -2.9114 2.1499 9 1 2.2389 -2.9942 3.1657 10 7 2.9299 -4.2458 1.6164 11 6 3.3999 -5.1434 2.6801 12 1 2.8773 -4.9119 3.6082 13 6 4.9046 -4.9525 2.8807 14 6 3.1223 -6.5725 2.2904 15 1 2.6450 -6.7920 1.3469 16 6 3.4788 -7.5998 3.1382 17 7 4.0605 -7.3325 4.2869 18 14 3.1342 -9.3711 2.6556 19 1 4.2966 -9.9160 1.9091 20 1 2.9071 -10.1823 3.8786 21 1 1.9248 -9.4235 1.7953 22 6 1.5933 -2.2043 1.2476 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.6767 1.9564 -0.8899 28 1 1.6766 1.9563 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 3.9431 -1.0086 0.2174 31 1 4.0336 0.0817 1.6362 32 1 4.1199 -1.6960 3.1473 33 1 4.7323 -2.6034 1.7356 34 1 2.1301 -4.6362 1.1410 35 1 5.4272 -5.1841 1.9526 36 1 5.1053 -3.9189 3.1625 37 1 5.2532 -5.6182 3.6702 38 1 4.3117 -8.0553 4.8832 39 1 0.5913 -2.3014 1.6656 40 1 1.6271 -2.6119 0.2372 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308492784.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:21 Heat of formation + Delta-G solvation = -49.829894 kcal Electronic energy + Delta-G solvation = -16140.359356 eV Core-core repulsion = 13759.773937 eV Total energy + Delta-G solvation = -2380.585420 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.04981 -37.35534 -35.20678 -33.44300 -30.66938 -29.13562 -28.02474 -27.29858 -26.50950 -22.49548 -22.02633 -20.74835 -20.26862 -18.46355 -16.85196 -16.79088 -16.27230 -15.53183 -15.26417 -14.82474 -14.43524 -14.19623 -13.87986 -13.60621 -13.19442 -13.03397 -12.90322 -12.77149 -12.68068 -12.46079 -12.32928 -12.18882 -12.04687 -11.73405 -11.54409 -11.46701 -11.25362 -11.18050 -11.07412 -10.80388 -10.55080 -9.04897 -8.13534 -6.28491 1.41261 1.42278 1.52563 2.40843 3.14345 3.59582 3.71085 3.75086 4.03037 4.30613 4.31162 4.42157 4.64109 4.66469 4.73273 4.75482 4.85696 4.86797 4.95769 4.98794 5.06793 5.10088 5.13319 5.17764 5.22916 5.26423 5.27030 5.34814 5.41323 5.44983 5.54488 5.57014 5.69007 5.71480 5.89896 6.22796 6.50946 6.82185 7.03200 7.42320 8.91920 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.050775 B = 0.005501 C = 0.005138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.318665 B = 5088.625497 C = 5447.854806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.144 4.144 4 C -0.077 4.077 5 H 0.074 0.926 6 C -0.104 4.104 7 C -0.115 4.115 8 C 0.077 3.923 9 H 0.012 0.988 10 N -0.678 5.678 11 C 0.217 3.783 12 H -0.037 1.037 13 C -0.113 4.113 14 C -0.539 4.539 15 H 0.059 0.941 16 C 0.012 3.988 17 N -0.919 5.919 18 Si 0.964 3.036 19 H -0.275 1.275 20 H -0.283 1.283 21 H -0.267 1.267 22 C -0.110 4.110 23 H 0.061 0.939 24 H 0.049 0.951 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.330 0.670 35 H 0.025 0.975 36 H 0.028 0.972 37 H 0.052 0.948 38 H 0.262 0.738 39 H 0.062 0.938 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.822 14.891 -7.210 17.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.103 4.103 3 C -0.201 4.201 4 C -0.096 4.096 5 H 0.093 0.907 6 C -0.142 4.142 7 C -0.153 4.153 8 C -0.033 4.033 9 H 0.030 0.970 10 N -0.309 5.309 11 C 0.108 3.892 12 H -0.020 1.020 13 C -0.171 4.171 14 C -0.578 4.578 15 H 0.077 0.923 16 C -0.187 4.187 17 N -0.558 5.558 18 Si 0.789 3.211 19 H -0.201 1.201 20 H -0.209 1.209 21 H -0.191 1.191 22 C -0.148 4.148 23 H 0.080 0.920 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.148 0.852 35 H 0.044 0.956 36 H 0.047 0.953 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.118 14.972 -7.244 17.135 hybrid contribution -0.746 -1.479 0.789 1.835 sum -4.864 13.493 -6.455 15.728 Atomic orbital electron populations 1.21847 0.94944 1.01632 1.01966 1.21084 0.95945 0.96485 0.96832 1.21822 1.01192 0.95141 1.01971 1.22082 0.94972 0.93959 0.98551 0.90722 1.22364 0.95708 0.96749 0.99381 1.22279 0.97604 0.96278 0.99157 1.22275 0.95581 0.90035 0.95424 0.97029 1.60842 1.38269 1.02555 1.29254 1.18952 0.92537 0.90430 0.87276 1.01994 1.21598 0.97992 0.97880 0.99630 1.21631 1.39680 0.92116 1.04333 0.92296 1.25765 0.94718 1.03474 0.94774 1.70037 1.41815 1.33329 1.10668 0.85465 0.78734 0.79218 0.77641 1.20080 1.20852 1.19117 1.22543 0.97040 0.95756 0.99446 0.91983 0.93199 0.92601 0.91630 0.92085 0.92551 0.92528 0.91639 0.90627 0.93240 0.92307 0.85231 0.95619 0.95306 0.92921 0.92867 0.91959 0.90958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.00 71.98 0.65 -1.93 16 2 C -0.08 -1.63 2.42 -10.79 -0.03 -1.65 16 3 C -0.14 -2.31 9.01 71.98 0.65 -1.66 16 4 C -0.08 -1.79 2.43 -9.51 -0.02 -1.82 16 5 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 6 C -0.10 -2.64 5.38 31.74 0.17 -2.47 16 7 C -0.11 -3.85 5.26 31.39 0.17 -3.68 16 8 C 0.08 2.86 3.24 45.64 0.15 3.01 16 9 H 0.01 0.49 7.44 -2.38 -0.02 0.47 16 10 N -0.68 -29.93 6.01 -469.59 -2.82 -32.75 16 11 C 0.22 11.52 2.60 44.17 0.11 11.63 16 12 H -0.04 -2.22 7.43 -2.39 -0.02 -2.24 16 13 C -0.11 -5.85 8.60 71.98 0.62 -5.23 16 14 C -0.54 -30.52 8.59 25.60 0.22 -30.30 16 15 H 0.06 3.25 7.62 -2.91 -0.02 3.23 16 16 C 0.01 0.66 5.30 84.66 0.45 1.11 16 17 N -0.92 -54.31 11.32 21.45 0.24 -54.07 16 18 Si 0.96 44.22 29.54 68.60 2.03 46.25 16 19 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 22 C -0.11 -3.16 4.72 31.67 0.15 -3.01 16 23 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 24 H 0.05 0.95 7.26 -2.39 -0.02 0.93 16 25 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 26 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.06 0.91 7.31 -2.39 -0.02 0.89 16 30 H 0.06 1.65 8.04 -2.39 -0.02 1.63 16 31 H 0.08 1.64 8.00 -2.39 -0.02 1.62 16 32 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.06 2.22 6.57 -2.39 -0.02 2.20 16 34 H 0.33 14.23 7.81 -89.69 -0.70 13.52 16 35 H 0.02 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.03 1.33 6.02 -2.39 -0.01 1.32 16 37 H 0.05 2.99 6.07 -2.39 -0.01 2.98 16 38 H 0.26 14.65 8.31 -92.70 -0.77 13.88 16 39 H 0.06 1.71 8.00 -2.39 -0.02 1.69 16 40 H 0.07 2.09 7.87 -2.38 -0.02 2.07 16 Total: -1.00 -60.68 303.64 3.01 -57.67 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 0.28 Total: 18.90 kcal Atomic # 6 Polarization: -39.28 SS G_CDS: 3.28 Total: -36.00 kcal Atomic # 7 Polarization: -84.24 SS G_CDS: -2.58 Total: -86.82 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -60.68 3.01 -57.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308492784.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.839 kcal (2) G-P(sol) polarization free energy of solvation -60.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds