Wall clock time and date at job start Mon Mar 30 2020 02:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47148 * 2 1 4 4 C 1.53002 * 109.47055 * 120.00149 * 2 1 3 5 5 H 1.09001 * 110.05572 * 301.41295 * 4 2 1 6 6 C 1.54257 * 110.03438 * 62.83585 * 4 2 1 7 7 C 1.54894 * 104.20111 * 142.89427 * 6 4 2 8 8 C 1.54899 * 102.74458 * 322.05827 * 7 6 4 9 9 H 1.08998 * 110.59605 * 279.21096 * 8 7 6 10 10 N 1.46894 * 110.48499 * 156.61827 * 8 7 6 11 11 C 1.46904 * 111.00006 * 90.22631 * 10 8 7 12 12 H 1.09000 * 109.47038 * 34.99283 * 11 10 8 13 13 C 1.53005 * 109.46661 * 274.99752 * 11 10 8 14 14 C 1.50701 * 109.47195 * 155.00140 * 11 10 8 15 15 H 1.08002 * 119.99761 * 359.97438 * 14 11 10 16 16 C 1.37871 * 119.99694 * 180.27796 * 14 11 10 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 11 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 11 19 19 H 1.48504 * 109.47209 * 89.99886 * 18 16 14 20 20 H 1.48501 * 109.47358 * 209.99377 * 18 16 14 21 21 H 1.48496 * 109.47341 * 329.99989 * 18 16 14 22 22 C 1.53883 * 110.03194 * 180.02562 * 4 2 1 23 23 H 1.08999 * 109.47410 * 60.00324 * 1 2 3 24 24 H 1.09005 * 109.46866 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47391 * 299.99401 * 1 2 3 26 26 H 1.09001 * 109.47085 * 239.99884 * 2 1 3 27 27 H 1.09000 * 109.47478 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47207 * 300.00244 * 3 2 1 29 29 H 1.09007 * 109.46839 * 60.00191 * 3 2 1 30 30 H 1.09004 * 110.48838 * 261.56932 * 6 4 2 31 31 H 1.09000 * 110.49150 * 24.21275 * 6 4 2 32 32 H 1.08995 * 110.76048 * 203.74265 * 7 6 4 33 33 H 1.08994 * 110.75358 * 80.36814 * 7 6 4 34 34 H 1.00895 * 111.00231 * 326.27083 * 10 8 7 35 35 H 1.09004 * 109.46658 * 179.97438 * 13 11 10 36 36 H 1.08995 * 109.47438 * 299.99503 * 13 11 10 37 37 H 1.08996 * 109.47069 * 60.00362 * 13 11 10 38 38 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 39 39 H 1.09006 * 110.02974 * 121.42662 * 22 4 2 40 40 H 1.09004 * 110.02720 * 0.02562 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6614 -0.2297 2.1454 6 6 1.5923 -2.1973 1.2270 7 6 2.7936 -2.9678 1.8291 8 6 4.0124 -2.2092 1.2475 9 1 4.2170 -2.5365 0.2282 10 7 5.1943 -2.4072 2.0970 11 6 5.9614 -3.5835 1.6658 12 1 5.9116 -3.6720 0.5806 13 6 5.3709 -4.8406 2.3076 14 6 7.3987 -3.4298 2.0920 15 1 7.7112 -2.5464 2.6290 16 6 8.3160 -4.4140 1.7908 17 7 7.9356 -5.4896 1.1366 18 14 10.0992 -4.2199 2.3122 19 1 10.2863 -4.8058 3.6639 20 1 10.9778 -4.9221 1.3425 21 1 10.4513 -2.7776 2.3449 22 6 3.5787 -0.7283 1.2626 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5137 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9563 0.8901 30 1 0.7033 -2.3357 1.8424 31 1 1.4039 -2.5235 0.2042 32 1 2.7913 -4.0064 1.4985 33 1 2.7846 -2.9078 2.9174 34 1 4.9329 -2.4822 3.0686 35 1 5.9398 -5.7135 1.9873 36 1 5.4207 -4.7522 3.3928 37 1 4.3313 -4.9518 1.9994 38 1 8.5810 -6.1818 0.9244 39 1 3.9465 -0.2403 2.1653 40 1 3.9621 -0.2174 0.3793 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308492785.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:23 Heat of formation + Delta-G solvation = -32.523026 kcal Electronic energy + Delta-G solvation = -16155.420624 eV Core-core repulsion = 13775.585686 eV Total energy + Delta-G solvation = -2379.834938 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.92335 -35.88298 -33.61127 -31.67845 -29.01261 -27.91050 -26.84487 -25.36910 -24.83450 -21.32635 -20.29190 -20.02563 -18.94749 -16.29861 -15.43087 -15.31523 -14.58416 -14.24931 -13.72833 -13.21338 -13.02379 -12.74091 -12.48527 -12.25503 -12.14379 -11.79920 -11.47314 -11.33985 -11.08463 -10.89405 -10.84490 -10.63333 -10.46081 -10.32356 -10.19424 -10.16472 -10.05268 -9.93932 -9.68078 -8.84027 -8.31142 -7.12138 -5.93482 -3.96496 3.35392 3.41590 3.46570 4.48039 4.79107 4.80251 4.90756 5.18418 5.28083 5.36733 5.38196 5.59259 5.63136 5.76579 5.79899 5.82429 5.83374 5.95156 6.01702 6.05436 6.13668 6.20932 6.26493 6.33982 6.37118 6.43678 6.63067 6.71626 6.78307 6.83983 6.98644 7.18486 7.46685 7.80837 7.95762 8.35868 8.63901 8.71877 9.11225 9.68822 11.13448 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.049013 B = 0.005541 C = 0.005193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.143099 B = 5052.108094 C = 5390.703350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 C -0.149 4.149 4 C -0.087 4.087 5 H 0.065 0.935 6 C -0.116 4.116 7 C -0.153 4.153 8 C 0.088 3.912 9 H 0.072 0.928 10 N -0.678 5.678 11 C 0.212 3.788 12 H 0.031 0.969 13 C -0.170 4.170 14 C -0.494 4.494 15 H 0.061 0.939 16 C 0.054 3.946 17 N -0.898 5.898 18 Si 0.896 3.104 19 H -0.283 1.283 20 H -0.288 1.288 21 H -0.274 1.274 22 C -0.110 4.110 23 H 0.049 0.951 24 H 0.054 0.946 25 H 0.051 0.949 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.048 0.952 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.325 0.675 35 H 0.085 0.915 36 H 0.025 0.975 37 H 0.011 0.989 38 H 0.258 0.742 39 H 0.066 0.934 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.276 8.311 -1.018 15.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 C -0.206 4.206 4 C -0.105 4.105 5 H 0.083 0.917 6 C -0.154 4.154 7 C -0.192 4.192 8 C -0.024 4.024 9 H 0.090 0.910 10 N -0.306 5.306 11 C 0.104 3.896 12 H 0.049 0.951 13 C -0.230 4.230 14 C -0.533 4.533 15 H 0.079 0.921 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.724 3.276 19 H -0.209 1.209 20 H -0.214 1.214 21 H -0.199 1.199 22 C -0.148 4.148 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.070 0.930 26 H 0.087 0.913 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.143 0.857 35 H 0.104 0.896 36 H 0.044 0.956 37 H 0.029 0.971 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.768 8.603 -1.452 15.464 hybrid contribution 0.359 -0.818 0.589 1.071 sum -12.409 7.785 -0.863 14.674 Atomic orbital electron populations 1.21855 0.95802 1.01570 1.01145 1.21214 0.95137 0.96112 0.98401 1.21898 1.01683 0.95984 1.01059 1.21823 0.96234 0.95363 0.97118 0.91670 1.22364 0.97614 0.94908 1.00497 1.23343 0.96320 0.99528 1.00040 1.22426 0.88888 0.93486 0.97581 0.90960 1.60787 1.19926 1.44701 1.05235 1.19209 0.91903 0.83229 0.95273 0.95071 1.22523 0.97045 1.04699 0.98690 1.21198 0.92648 1.04070 1.35370 0.92055 1.24948 0.98831 0.95333 0.95471 1.69888 1.34245 1.08768 1.40948 0.86530 0.84779 0.78144 0.78114 1.20900 1.21421 1.19908 1.22281 0.93037 0.97426 1.02072 0.93215 0.92668 0.93029 0.91256 0.92034 0.93265 0.93024 0.92603 0.91918 0.91749 0.91942 0.85736 0.89608 0.95593 0.97051 0.93168 0.91555 0.91883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.00 37.16 0.33 -1.08 16 2 C -0.09 -1.00 2.21 -90.62 -0.20 -1.20 16 3 C -0.15 -1.56 8.93 37.16 0.33 -1.22 16 4 C -0.09 -1.08 2.51 -89.50 -0.22 -1.31 16 5 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 6 C -0.12 -1.50 5.32 -25.07 -0.13 -1.63 16 7 C -0.15 -2.40 5.52 -24.73 -0.14 -2.54 16 8 C 0.09 1.57 3.17 -66.03 -0.21 1.36 16 9 H 0.07 1.42 7.44 -51.93 -0.39 1.03 16 10 N -0.68 -14.55 6.05 -99.18 -0.60 -15.15 16 11 C 0.21 5.38 2.57 -68.86 -0.18 5.20 16 12 H 0.03 0.88 7.43 -51.93 -0.39 0.49 16 13 C -0.17 -4.13 8.76 37.16 0.33 -3.80 16 14 C -0.49 -13.90 8.84 -34.44 -0.30 -14.20 16 15 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 16 C 0.05 1.53 5.31 -17.82 -0.09 1.44 16 17 N -0.90 -26.07 11.33 55.43 0.63 -25.45 16 18 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 22 C -0.11 -1.66 5.65 -25.58 -0.14 -1.81 16 23 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.05 0.53 7.27 -51.93 -0.38 0.15 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.07 0.82 8.12 -51.93 -0.42 0.40 16 27 H 0.06 0.69 6.47 -51.93 -0.34 0.35 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.80 7.75 -51.93 -0.40 0.39 16 32 H 0.06 1.08 6.62 -51.93 -0.34 0.73 16 33 H 0.06 0.98 7.79 -51.93 -0.40 0.57 16 34 H 0.33 6.69 7.97 -39.29 -0.31 6.38 16 35 H 0.09 2.32 6.08 -51.93 -0.32 2.00 16 36 H 0.02 0.60 8.13 -51.93 -0.42 0.18 16 37 H 0.01 0.23 5.74 -51.93 -0.30 -0.06 16 38 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.07 1.04 8.04 -51.93 -0.42 0.62 16 40 H 0.06 0.95 6.33 -51.93 -0.33 0.62 16 LS Contribution 302.17 15.07 4.55 4.55 Total: -1.00 -28.11 302.17 -8.31 -36.41 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -7.24 Total: 3.65 kcal Atomic # 6 Polarization: -20.16 SS G_CDS: -0.63 Total: -20.79 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: 0.03 Total: -40.59 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.11 -8.31 -36.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308492785.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.889 kcal (2) G-P(sol) polarization free energy of solvation -28.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds