Wall clock time and date at job start Mon Mar 30 2020 02:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47148 * 2 1 4 4 C 1.53002 * 109.47055 * 120.00149 * 2 1 3 5 5 H 1.09001 * 110.05572 * 301.41295 * 4 2 1 6 6 C 1.54257 * 110.03438 * 62.83585 * 4 2 1 7 7 C 1.54894 * 104.20111 * 142.89427 * 6 4 2 8 8 C 1.54899 * 102.74458 * 322.05827 * 7 6 4 9 9 H 1.08998 * 110.59605 * 279.21096 * 8 7 6 10 10 N 1.46894 * 110.48499 * 156.61827 * 8 7 6 11 11 C 1.46904 * 111.00006 * 90.22631 * 10 8 7 12 12 H 1.09000 * 109.47038 * 34.99283 * 11 10 8 13 13 C 1.53005 * 109.46661 * 274.99752 * 11 10 8 14 14 C 1.50701 * 109.47195 * 155.00140 * 11 10 8 15 15 H 1.08002 * 119.99761 * 359.97438 * 14 11 10 16 16 C 1.37871 * 119.99694 * 180.27796 * 14 11 10 17 17 N 1.31514 * 120.00482 * 359.71466 * 16 14 11 18 18 Si 1.86801 * 119.99746 * 179.72062 * 16 14 11 19 19 H 1.48504 * 109.47209 * 89.99886 * 18 16 14 20 20 H 1.48501 * 109.47358 * 209.99377 * 18 16 14 21 21 H 1.48496 * 109.47341 * 329.99989 * 18 16 14 22 22 C 1.53883 * 110.03194 * 180.02562 * 4 2 1 23 23 H 1.08999 * 109.47410 * 60.00324 * 1 2 3 24 24 H 1.09005 * 109.46866 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47391 * 299.99401 * 1 2 3 26 26 H 1.09001 * 109.47085 * 239.99884 * 2 1 3 27 27 H 1.09000 * 109.47478 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47207 * 300.00244 * 3 2 1 29 29 H 1.09007 * 109.46839 * 60.00191 * 3 2 1 30 30 H 1.09004 * 110.48838 * 261.56932 * 6 4 2 31 31 H 1.09000 * 110.49150 * 24.21275 * 6 4 2 32 32 H 1.08995 * 110.76048 * 203.74265 * 7 6 4 33 33 H 1.08994 * 110.75358 * 80.36814 * 7 6 4 34 34 H 1.00895 * 111.00231 * 326.27083 * 10 8 7 35 35 H 1.09004 * 109.46658 * 179.97438 * 13 11 10 36 36 H 1.08995 * 109.47438 * 299.99503 * 13 11 10 37 37 H 1.08996 * 109.47069 * 60.00362 * 13 11 10 38 38 H 0.96995 * 120.00207 * 179.97438 * 17 16 14 39 39 H 1.09006 * 110.02974 * 121.42662 * 22 4 2 40 40 H 1.09004 * 110.02720 * 0.02562 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6614 -0.2297 2.1454 6 6 1.5923 -2.1973 1.2270 7 6 2.7936 -2.9678 1.8291 8 6 4.0124 -2.2092 1.2475 9 1 4.2170 -2.5365 0.2282 10 7 5.1943 -2.4072 2.0970 11 6 5.9614 -3.5835 1.6658 12 1 5.9116 -3.6720 0.5806 13 6 5.3709 -4.8406 2.3076 14 6 7.3987 -3.4298 2.0920 15 1 7.7112 -2.5464 2.6290 16 6 8.3160 -4.4140 1.7908 17 7 7.9356 -5.4896 1.1366 18 14 10.0992 -4.2199 2.3122 19 1 10.2863 -4.8058 3.6639 20 1 10.9778 -4.9221 1.3425 21 1 10.4513 -2.7776 2.3449 22 6 3.5787 -0.7283 1.2626 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5137 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 3.1300 1.4426 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9563 0.8901 30 1 0.7033 -2.3357 1.8424 31 1 1.4039 -2.5235 0.2042 32 1 2.7913 -4.0064 1.4985 33 1 2.7846 -2.9078 2.9174 34 1 4.9329 -2.4822 3.0686 35 1 5.9398 -5.7135 1.9873 36 1 5.4207 -4.7522 3.3928 37 1 4.3313 -4.9518 1.9994 38 1 8.5810 -6.1818 0.9244 39 1 3.9465 -0.2403 2.1653 40 1 3.9621 -0.2174 0.3793 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308492785.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:23 Heat of formation + Delta-G solvation = -48.346688 kcal Electronic energy + Delta-G solvation = -16156.106789 eV Core-core repulsion = 13775.585686 eV Total energy + Delta-G solvation = -2380.521103 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.15342 -37.43794 -35.17081 -33.43921 -30.48393 -29.26203 -27.84418 -27.18293 -26.48476 -22.41301 -22.12172 -21.43398 -20.05744 -18.32717 -16.97723 -16.71630 -16.23357 -15.37079 -15.13987 -14.56949 -14.37820 -14.14359 -13.99175 -13.67536 -13.19751 -13.11215 -12.95049 -12.86568 -12.73550 -12.39788 -12.33518 -12.15482 -12.09741 -11.80576 -11.66436 -11.55434 -11.30259 -11.15860 -11.04002 -10.83167 -10.47471 -8.86183 -8.08767 -6.20299 1.42611 1.43166 1.54568 2.44487 3.19012 3.55714 3.79043 3.82603 3.99366 4.22550 4.34106 4.40564 4.59929 4.69727 4.74978 4.76014 4.80185 4.84695 4.86917 4.92289 4.97933 5.07849 5.11200 5.12291 5.16259 5.23209 5.31809 5.36756 5.41815 5.46296 5.49750 5.59699 5.70613 5.71085 5.86376 6.30475 6.71441 6.88990 6.98562 7.50152 8.96580 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.049013 B = 0.005541 C = 0.005193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.143099 B = 5052.108094 C = 5390.703350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.089 4.089 3 C -0.148 4.148 4 C -0.078 4.078 5 H 0.077 0.923 6 C -0.107 4.107 7 C -0.148 4.148 8 C 0.081 3.919 9 H 0.048 0.952 10 N -0.683 5.683 11 C 0.218 3.782 12 H -0.005 1.005 13 C -0.156 4.156 14 C -0.517 4.517 15 H 0.053 0.947 16 C 0.007 3.993 17 N -0.924 5.924 18 Si 0.961 3.039 19 H -0.275 1.275 20 H -0.284 1.284 21 H -0.271 1.271 22 C -0.102 4.102 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.048 0.952 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.066 0.934 34 H 0.331 0.669 35 H 0.057 0.943 36 H 0.029 0.971 37 H 0.032 0.968 38 H 0.260 0.740 39 H 0.061 0.939 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.400 9.308 -0.420 17.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.108 4.108 3 C -0.205 4.205 4 C -0.097 4.097 5 H 0.095 0.905 6 C -0.145 4.145 7 C -0.187 4.187 8 C -0.030 4.030 9 H 0.066 0.934 10 N -0.312 5.312 11 C 0.109 3.891 12 H 0.013 0.987 13 C -0.215 4.215 14 C -0.555 4.555 15 H 0.071 0.929 16 C -0.191 4.191 17 N -0.564 5.564 18 Si 0.787 3.213 19 H -0.200 1.200 20 H -0.209 1.209 21 H -0.196 1.196 22 C -0.140 4.140 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.149 0.851 35 H 0.075 0.925 36 H 0.048 0.952 37 H 0.051 0.949 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.913 9.611 -0.852 16.931 hybrid contribution 0.692 -1.116 0.371 1.365 sum -13.220 8.495 -0.481 15.722 Atomic orbital electron populations 1.21821 0.94223 1.01966 1.02011 1.21191 0.96411 0.96134 0.97042 1.21885 1.00880 0.95755 1.02007 1.21770 0.93888 0.95501 0.98529 0.90464 1.22330 0.96984 0.94413 1.00804 1.23230 0.96458 0.98791 1.00246 1.22498 0.88672 0.96037 0.95780 0.93390 1.60684 1.21741 1.42745 1.05991 1.18944 0.91857 0.85190 0.93070 0.98673 1.22320 0.97766 1.02799 0.98615 1.21501 0.94355 1.03966 1.35696 0.92866 1.25735 1.02972 0.94969 0.95378 1.70019 1.35550 1.09314 1.41526 0.85511 0.79685 0.78152 0.77972 1.20026 1.20946 1.19565 1.22199 0.95256 0.94900 1.01685 0.92302 0.92515 0.92275 0.92282 0.93288 0.92172 0.92268 0.90476 0.91676 0.93062 0.91489 0.85092 0.92459 0.95221 0.94878 0.93062 0.91992 0.92237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.32 9.00 71.98 0.65 -1.68 16 2 C -0.09 -1.79 2.21 -10.79 -0.02 -1.81 16 3 C -0.15 -2.79 8.93 71.98 0.64 -2.15 16 4 C -0.08 -1.79 2.51 -10.07 -0.03 -1.81 16 5 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 6 C -0.11 -2.53 5.32 31.67 0.17 -2.37 16 7 C -0.15 -4.50 5.52 31.89 0.18 -4.32 16 8 C 0.08 2.92 3.17 46.01 0.15 3.06 16 9 H 0.05 1.95 7.44 -2.39 -0.02 1.93 16 10 N -0.68 -29.66 6.05 -467.71 -2.83 -32.49 16 11 C 0.22 11.38 2.57 44.17 0.11 11.49 16 12 H 0.00 -0.27 7.43 -2.39 -0.02 -0.29 16 13 C -0.16 -7.65 8.76 71.98 0.63 -7.02 16 14 C -0.52 -29.55 8.84 25.60 0.23 -29.33 16 15 H 0.05 3.06 7.81 -2.91 -0.02 3.04 16 16 C 0.01 0.42 5.31 84.65 0.45 0.87 16 17 N -0.92 -54.48 11.33 21.45 0.24 -54.24 16 18 Si 0.96 44.88 29.54 68.60 2.03 46.91 16 19 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 20 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 21 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 22 C -0.10 -3.02 5.65 31.34 0.18 -2.84 16 23 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.06 0.91 7.27 -2.38 -0.02 0.89 16 25 H 0.06 0.88 8.14 -2.39 -0.02 0.87 16 26 H 0.06 1.31 8.12 -2.39 -0.02 1.29 16 27 H 0.05 1.04 6.47 -2.39 -0.02 1.02 16 28 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.06 1.02 8.14 -2.38 -0.02 1.01 16 30 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.06 1.52 7.75 -2.39 -0.02 1.50 16 32 H 0.05 1.68 6.62 -2.39 -0.02 1.66 16 33 H 0.07 1.98 7.79 -2.39 -0.02 1.96 16 34 H 0.33 13.58 7.97 -89.70 -0.71 12.87 16 35 H 0.06 3.15 6.08 -2.38 -0.01 3.14 16 36 H 0.03 1.38 8.13 -2.39 -0.02 1.36 16 37 H 0.03 1.43 5.74 -2.39 -0.01 1.42 16 38 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 39 H 0.06 1.88 8.04 -2.38 -0.02 1.87 16 40 H 0.06 1.79 6.33 -2.39 -0.02 1.77 16 Total: -1.00 -60.36 302.17 3.04 -57.32 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: 0.27 Total: 20.41 kcal Atomic # 6 Polarization: -41.23 SS G_CDS: 3.33 Total: -37.91 kcal Atomic # 7 Polarization: -84.14 SS G_CDS: -2.59 Total: -86.73 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -60.36 3.04 -57.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308492785.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.971 kcal (2) G-P(sol) polarization free energy of solvation -60.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds