Wall clock time and date at job start Mon Mar 30 2020 02:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 5 5 C 1.36940 * 120.00565 * 275.00309 * 4 2 1 6 6 H 1.08004 * 119.99402 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00150 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00111 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99847 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.47050 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47205 * 119.99454 * 9 7 5 12 12 H 1.48500 * 109.46799 * 240.00306 * 9 7 5 13 13 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 14 14 H 1.08996 * 109.47729 * 184.99759 * 13 2 1 15 15 C 1.52997 * 109.47105 * 305.00259 * 13 2 1 16 16 C 1.53001 * 109.47279 * 65.00040 * 13 2 1 17 17 C 1.52997 * 109.47577 * 180.02562 * 16 13 2 18 18 C 1.53000 * 109.47260 * 179.97438 * 17 16 13 19 19 C 1.53006 * 109.46891 * 60.00115 * 18 17 16 20 20 C 1.52997 * 109.47075 * 299.99998 * 19 18 17 21 21 C 1.52991 * 109.47188 * 60.00083 * 20 19 18 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 25 25 H 0.97006 * 119.99921 * 94.99902 * 4 2 1 26 26 H 0.96997 * 119.99796 * 179.97438 * 8 7 5 27 27 H 1.08993 * 109.47314 * 59.99963 * 15 13 2 28 28 H 1.09004 * 109.47198 * 179.97438 * 15 13 2 29 29 H 1.08998 * 109.47494 * 299.99463 * 15 13 2 30 30 H 1.09001 * 109.46924 * 300.00271 * 16 13 2 31 31 H 1.09001 * 109.47096 * 300.00020 * 17 16 13 32 32 H 1.09000 * 109.46818 * 59.99916 * 17 16 13 33 33 H 1.09001 * 109.47254 * 300.00134 * 18 17 16 34 34 H 1.09004 * 109.47094 * 180.02562 * 18 17 16 35 35 H 1.09003 * 109.46830 * 180.02562 * 19 18 17 36 36 H 1.09001 * 109.47156 * 59.99959 * 19 18 17 37 37 H 1.09001 * 109.47096 * 299.99997 * 20 19 18 38 38 H 1.09000 * 109.47278 * 180.02562 * 20 19 18 39 39 H 1.09001 * 109.47313 * 180.02562 * 21 20 19 40 40 H 1.08993 * 109.47344 * 60.00221 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1491 -0.0074 2.3758 6 1 1.8926 1.0406 2.4241 7 6 2.6113 -0.6619 3.5094 8 7 2.9234 -1.9392 3.4505 9 14 2.7890 0.2698 5.1186 10 1 2.3752 1.6824 4.9211 11 1 1.9278 -0.3587 6.1522 12 1 4.2058 0.2269 5.5615 13 6 2.0400 -0.7212 -1.2491 14 1 3.1263 -0.7994 -1.2055 15 6 1.4300 -2.1228 -1.3136 16 6 1.6353 0.0689 -2.4953 17 6 2.1448 -0.6527 -3.7445 18 6 1.7396 0.1371 -4.9906 19 6 2.3497 1.5388 -4.9268 20 6 1.8402 2.2604 -3.6776 21 6 2.2454 1.4706 -2.4315 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 2.2490 -1.6317 1.1527 26 1 3.2468 -2.3964 4.2425 27 1 0.3437 -2.0447 -1.3573 28 1 1.7930 -2.6366 -2.2038 29 1 1.7183 -2.6858 -0.4259 30 1 0.5490 0.1471 -2.5390 31 1 3.2312 -0.7313 -3.7011 32 1 1.7099 -1.6511 -3.7902 33 1 0.6532 0.2153 -5.0339 34 1 2.1022 -0.3772 -5.8807 35 1 2.0606 2.1017 -5.8144 36 1 3.4360 1.4606 -4.8835 37 1 0.7538 2.3386 -3.7208 38 1 2.2745 3.2591 -3.6323 39 1 1.8821 1.9844 -1.5415 40 1 3.3317 1.3924 -2.3882 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308642692.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:34 Heat of formation + Delta-G solvation = -29.557465 kcal Electronic energy + Delta-G solvation = -16461.872961 eV Core-core repulsion = 14082.166620 eV Total energy + Delta-G solvation = -2379.706341 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.16271 -36.13164 -33.13341 -31.01797 -30.53286 -28.56179 -27.77525 -24.47406 -23.47601 -22.27957 -21.20680 -19.67904 -18.33898 -17.15065 -15.53512 -14.82654 -14.48741 -14.04971 -13.87596 -13.52842 -13.37514 -13.18716 -12.54576 -12.28927 -12.13948 -11.82766 -11.56376 -11.21584 -11.03776 -10.99614 -10.88950 -10.81846 -10.66211 -10.31793 -10.20470 -10.03718 -9.94123 -9.76451 -9.43455 -9.24723 -8.82135 -6.85803 -5.69866 -2.96881 3.46746 3.52333 3.54476 4.63925 4.80195 4.86268 4.90006 5.29033 5.33278 5.52968 5.54940 5.58939 5.64498 5.66633 5.74393 5.79582 5.94397 5.97522 6.01129 6.09302 6.12543 6.21538 6.29252 6.33514 6.36245 6.40043 6.43014 6.47925 6.62920 6.67114 6.71118 6.88709 6.92447 7.08722 7.31156 7.77145 8.50132 9.60717 10.22026 10.56302 11.53424 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.043274 B = 0.006202 C = 0.005839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.890116 B = 4513.357272 C = 4794.158578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.175 3.825 3 H 0.048 0.952 4 N -0.725 5.725 5 C -0.231 4.231 6 H 0.069 0.931 7 C -0.017 4.017 8 N -0.935 5.935 9 Si 0.904 3.096 10 H -0.281 1.281 11 H -0.293 1.293 12 H -0.293 1.293 13 C -0.091 4.091 14 H 0.067 0.933 15 C -0.146 4.146 16 C -0.078 4.078 17 C -0.116 4.116 18 C -0.118 4.118 19 C -0.119 4.119 20 C -0.119 4.119 21 C -0.118 4.118 22 H 0.049 0.951 23 H 0.036 0.964 24 H 0.047 0.953 25 H 0.383 0.617 26 H 0.253 0.747 27 H 0.053 0.947 28 H 0.044 0.956 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.068 0.932 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.732 4.444 -16.098 16.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.066 3.934 3 H 0.065 0.935 4 N -0.367 5.367 5 C -0.363 4.363 6 H 0.087 0.913 7 C -0.212 4.212 8 N -0.585 5.585 9 Si 0.735 3.265 10 H -0.206 1.206 11 H -0.220 1.220 12 H -0.220 1.220 13 C -0.110 4.110 14 H 0.085 0.915 15 C -0.203 4.203 16 C -0.096 4.096 17 C -0.153 4.153 18 C -0.156 4.156 19 C -0.156 4.156 20 C -0.156 4.156 21 C -0.155 4.155 22 H 0.068 0.932 23 H 0.055 0.945 24 H 0.066 0.934 25 H 0.217 0.783 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.717 4.576 -15.952 16.816 hybrid contribution 0.158 0.128 1.008 1.028 sum -2.559 4.704 -14.944 15.875 Atomic orbital electron populations 1.22531 0.99832 1.00830 0.99494 1.20276 0.91586 0.95312 0.86237 0.93460 1.42508 1.78051 1.10765 1.05392 1.19310 1.35711 0.93798 0.87471 0.91312 1.24709 1.02604 0.95970 0.97957 1.69670 1.51499 1.08658 1.28629 0.86157 0.77247 0.78789 0.84288 1.20648 1.21997 1.21991 1.21410 1.00261 0.95016 0.94296 0.91471 1.21892 1.00581 0.96725 1.01117 1.21177 1.00106 0.94370 0.93990 1.21651 1.00896 0.98712 0.94072 1.21535 1.00457 0.95745 0.97852 1.21533 1.00417 0.96049 0.97612 1.21536 1.00690 0.98407 0.94976 1.21656 1.00747 0.95663 0.97440 0.93228 0.94492 0.93400 0.78267 0.93707 0.92840 0.93665 0.92102 0.91248 0.92260 0.91869 0.92309 0.92635 0.92730 0.92222 0.92314 0.92506 0.91292 0.92164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 8.76 37.16 0.33 -2.79 16 2 C 0.18 3.53 2.45 -67.94 -0.17 3.37 16 3 H 0.05 0.98 6.11 -51.93 -0.32 0.67 16 4 N -0.73 -18.46 5.06 -53.43 -0.27 -18.73 16 5 C -0.23 -6.54 9.93 -15.06 -0.15 -6.69 16 6 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 7 C -0.02 -0.50 5.50 -17.43 -0.10 -0.59 16 8 N -0.94 -28.73 13.06 55.49 0.72 -28.01 16 9 Si 0.90 22.79 29.55 -169.99 -5.02 17.76 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 12 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 13 C -0.09 -1.52 1.91 -90.63 -0.17 -1.69 16 14 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 15 C -0.15 -2.37 8.23 37.16 0.31 -2.06 16 16 C -0.08 -1.06 1.53 -90.62 -0.14 -1.20 16 17 C -0.12 -1.39 4.85 -26.73 -0.13 -1.52 16 18 C -0.12 -1.23 5.92 -26.73 -0.16 -1.39 16 19 C -0.12 -1.21 5.92 -26.73 -0.16 -1.37 16 20 C -0.12 -1.32 5.92 -26.74 -0.16 -1.48 16 21 C -0.12 -1.57 4.86 -26.73 -0.13 -1.70 16 22 H 0.05 0.93 6.35 -51.93 -0.33 0.60 16 23 H 0.04 0.58 6.56 -51.93 -0.34 0.24 16 24 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.38 10.32 6.37 -40.82 -0.26 10.06 16 26 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 27 H 0.05 0.83 6.35 -51.93 -0.33 0.50 16 28 H 0.04 0.63 6.43 -51.93 -0.33 0.30 16 29 H 0.06 1.13 6.77 -51.93 -0.35 0.78 16 30 H 0.07 0.96 6.56 -51.93 -0.34 0.62 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.75 6.43 -51.93 -0.33 0.41 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 1.00 6.32 -51.93 -0.33 0.67 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 296.58 15.07 4.47 4.47 Total: -1.00 -29.64 296.58 -7.97 -37.60 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -7.04 Total: 6.02 kcal Atomic # 6 Polarization: -18.29 SS G_CDS: -0.83 Total: -19.12 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: 0.45 Total: -46.74 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.64 -7.97 -37.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308642692.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.047 kcal (2) G-P(sol) polarization free energy of solvation -29.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds