Wall clock time and date at job start Mon Mar 30 2020 02:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 5 5 C 1.36940 * 120.00565 * 275.00309 * 4 2 1 6 6 H 1.08004 * 119.99402 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00150 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00111 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99847 * 180.02562 * 7 5 4 10 10 H 1.48508 * 109.47050 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47205 * 119.99454 * 9 7 5 12 12 H 1.48500 * 109.46799 * 240.00306 * 9 7 5 13 13 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 14 14 H 1.08996 * 109.47729 * 184.99759 * 13 2 1 15 15 C 1.52997 * 109.47105 * 305.00259 * 13 2 1 16 16 C 1.53001 * 109.47279 * 65.00040 * 13 2 1 17 17 C 1.52997 * 109.47577 * 180.02562 * 16 13 2 18 18 C 1.53000 * 109.47260 * 179.97438 * 17 16 13 19 19 C 1.53006 * 109.46891 * 60.00115 * 18 17 16 20 20 C 1.52997 * 109.47075 * 299.99998 * 19 18 17 21 21 C 1.52991 * 109.47188 * 60.00083 * 20 19 18 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 25 25 H 0.97006 * 119.99921 * 94.99902 * 4 2 1 26 26 H 0.96997 * 119.99796 * 179.97438 * 8 7 5 27 27 H 1.08993 * 109.47314 * 59.99963 * 15 13 2 28 28 H 1.09004 * 109.47198 * 179.97438 * 15 13 2 29 29 H 1.08998 * 109.47494 * 299.99463 * 15 13 2 30 30 H 1.09001 * 109.46924 * 300.00271 * 16 13 2 31 31 H 1.09001 * 109.47096 * 300.00020 * 17 16 13 32 32 H 1.09000 * 109.46818 * 59.99916 * 17 16 13 33 33 H 1.09001 * 109.47254 * 300.00134 * 18 17 16 34 34 H 1.09004 * 109.47094 * 180.02562 * 18 17 16 35 35 H 1.09003 * 109.46830 * 180.02562 * 19 18 17 36 36 H 1.09001 * 109.47156 * 59.99959 * 19 18 17 37 37 H 1.09001 * 109.47096 * 299.99997 * 20 19 18 38 38 H 1.09000 * 109.47278 * 180.02562 * 20 19 18 39 39 H 1.09001 * 109.47313 * 180.02562 * 21 20 19 40 40 H 1.08993 * 109.47344 * 60.00221 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1491 -0.0074 2.3758 6 1 1.8926 1.0406 2.4241 7 6 2.6113 -0.6619 3.5094 8 7 2.9234 -1.9392 3.4505 9 14 2.7890 0.2698 5.1186 10 1 2.3752 1.6824 4.9211 11 1 1.9278 -0.3587 6.1522 12 1 4.2058 0.2269 5.5615 13 6 2.0400 -0.7212 -1.2491 14 1 3.1263 -0.7994 -1.2055 15 6 1.4300 -2.1228 -1.3136 16 6 1.6353 0.0689 -2.4953 17 6 2.1448 -0.6527 -3.7445 18 6 1.7396 0.1371 -4.9906 19 6 2.3497 1.5388 -4.9268 20 6 1.8402 2.2604 -3.6776 21 6 2.2454 1.4706 -2.4315 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 2.2490 -1.6317 1.1527 26 1 3.2468 -2.3964 4.2425 27 1 0.3437 -2.0447 -1.3573 28 1 1.7930 -2.6366 -2.2038 29 1 1.7183 -2.6858 -0.4259 30 1 0.5490 0.1471 -2.5390 31 1 3.2312 -0.7313 -3.7011 32 1 1.7099 -1.6511 -3.7902 33 1 0.6532 0.2153 -5.0339 34 1 2.1022 -0.3772 -5.8807 35 1 2.0606 2.1017 -5.8144 36 1 3.4360 1.4606 -4.8835 37 1 0.7538 2.3386 -3.7208 38 1 2.2745 3.2591 -3.6323 39 1 1.8821 1.9844 -1.5415 40 1 3.3317 1.3924 -2.3882 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308642692.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:34 Heat of formation + Delta-G solvation = -45.749985 kcal Electronic energy + Delta-G solvation = -16462.575122 eV Core-core repulsion = 14082.166620 eV Total energy + Delta-G solvation = -2380.408502 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.34164 -37.56061 -34.95173 -32.62018 -31.62291 -30.03358 -29.26903 -26.21836 -25.07629 -23.27064 -22.49945 -20.65819 -19.87950 -19.16209 -16.88743 -16.31466 -16.12701 -15.41123 -15.18423 -14.81009 -14.62784 -14.50683 -14.10708 -13.76984 -13.22948 -13.10529 -13.04132 -12.82360 -12.69191 -12.54927 -12.21094 -12.06177 -11.95816 -11.89248 -11.56261 -11.55344 -11.45904 -11.11311 -10.88250 -10.69976 -10.51341 -8.96107 -7.92318 -5.19077 1.46070 1.46806 1.56711 2.57190 3.41137 3.73555 3.84144 3.94512 4.15067 4.19151 4.27227 4.47370 4.49698 4.54853 4.61979 4.72041 4.74702 4.78900 4.84434 4.86916 4.98958 5.01719 5.12166 5.17085 5.23409 5.26588 5.32315 5.35492 5.39645 5.44286 5.46450 5.51919 5.57348 5.62202 5.70532 5.83028 6.31680 7.36712 8.17297 8.39483 9.31993 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.043274 B = 0.006202 C = 0.005839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.890116 B = 4513.357272 C = 4794.158578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.169 3.831 3 H 0.040 0.960 4 N -0.738 5.738 5 C -0.233 4.233 6 H 0.072 0.928 7 C -0.079 4.079 8 N -0.972 5.972 9 Si 0.969 3.031 10 H -0.267 1.267 11 H -0.294 1.294 12 H -0.294 1.294 13 C -0.082 4.082 14 H 0.046 0.954 15 C -0.140 4.140 16 C -0.069 4.069 17 C -0.114 4.114 18 C -0.115 4.115 19 C -0.118 4.118 20 C -0.115 4.115 21 C -0.118 4.118 22 H 0.047 0.953 23 H 0.070 0.930 24 H 0.027 0.973 25 H 0.372 0.628 26 H 0.249 0.751 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.029 0.971 30 H 0.076 0.924 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.056 0.944 37 H 0.065 0.935 38 H 0.063 0.937 39 H 0.052 0.948 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.511 5.481 -17.843 18.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.061 3.939 3 H 0.058 0.942 4 N -0.379 5.379 5 C -0.365 4.365 6 H 0.089 0.911 7 C -0.271 4.271 8 N -0.624 5.624 9 Si 0.799 3.201 10 H -0.192 1.192 11 H -0.221 1.221 12 H -0.221 1.221 13 C -0.101 4.101 14 H 0.065 0.935 15 C -0.198 4.198 16 C -0.088 4.088 17 C -0.151 4.151 18 C -0.153 4.153 19 C -0.155 4.155 20 C -0.152 4.152 21 C -0.156 4.156 22 H 0.066 0.934 23 H 0.089 0.911 24 H 0.046 0.954 25 H 0.205 0.795 26 H 0.058 0.942 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.048 0.952 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.516 5.650 -17.734 18.941 hybrid contribution 0.398 -0.169 1.490 1.552 sum -3.118 5.481 -16.244 17.425 Atomic orbital electron populations 1.22373 0.98171 1.00877 1.00156 1.20524 0.92616 0.94865 0.85877 0.94170 1.42737 1.78351 1.10431 1.06368 1.19669 1.34252 0.94018 0.88573 0.91053 1.25506 1.03368 0.96893 1.01329 1.69826 1.53142 1.10217 1.29228 0.85120 0.76772 0.78157 0.80050 1.19180 1.22139 1.22128 1.21294 0.98900 0.95639 0.94310 0.93502 1.21839 1.01088 0.96046 1.00780 1.21100 1.00398 0.94181 0.93083 1.21627 1.00489 0.99058 0.93963 1.21521 1.00905 0.95562 0.97267 1.21539 1.00212 0.96099 0.97680 1.21511 1.01148 0.98434 0.94139 1.21637 1.00033 0.95733 0.98185 0.93446 0.91142 0.95354 0.79531 0.94182 0.91944 0.91232 0.95162 0.90614 0.92906 0.91378 0.91646 0.91229 0.90996 0.92565 0.91662 0.91869 0.92886 0.93223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.69 8.76 71.98 0.63 -5.06 16 2 C 0.17 6.82 2.45 44.99 0.11 6.93 16 3 H 0.04 1.68 6.11 -2.39 -0.01 1.67 16 4 N -0.74 -38.38 5.06 -322.95 -1.63 -40.01 16 5 C -0.23 -13.33 9.93 84.03 0.83 -12.50 16 6 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 7 C -0.08 -4.67 5.50 84.86 0.47 -4.21 16 8 N -0.97 -61.11 13.06 21.65 0.28 -60.83 16 9 Si 0.97 47.38 29.55 68.60 2.03 49.41 16 10 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 11 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 12 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 13 C -0.08 -2.73 1.91 -10.80 -0.02 -2.75 16 14 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 15 C -0.14 -4.45 8.23 71.98 0.59 -3.86 16 16 C -0.07 -1.76 1.53 -10.79 -0.02 -1.78 16 17 C -0.11 -2.46 4.85 30.59 0.15 -2.31 16 18 C -0.12 -2.01 5.92 30.60 0.18 -1.83 16 19 C -0.12 -2.05 5.92 30.60 0.18 -1.87 16 20 C -0.11 -2.27 5.92 30.59 0.18 -2.09 16 21 C -0.12 -3.01 4.86 30.59 0.15 -2.86 16 22 H 0.05 1.73 6.35 -2.39 -0.02 1.72 16 23 H 0.07 2.07 6.56 -2.39 -0.02 2.06 16 24 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 25 H 0.37 20.75 6.37 -92.70 -0.59 20.15 16 26 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 27 H 0.06 1.85 6.35 -2.39 -0.02 1.83 16 28 H 0.07 1.85 6.43 -2.38 -0.02 1.83 16 29 H 0.03 1.13 6.77 -2.39 -0.02 1.11 16 30 H 0.08 1.87 6.56 -2.39 -0.02 1.85 16 31 H 0.05 1.21 8.14 -2.39 -0.02 1.20 16 32 H 0.07 1.41 6.43 -2.39 -0.02 1.40 16 33 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 35 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.05 1.50 6.32 -2.39 -0.02 1.48 16 40 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -63.73 296.58 4.52 -59.22 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: 0.40 Total: 26.40 kcal Atomic # 6 Polarization: -37.62 SS G_CDS: 3.44 Total: -34.18 kcal Atomic # 7 Polarization: -99.49 SS G_CDS: -1.35 Total: -100.84 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.03 Total: 49.41 kcal Total: -63.73 4.52 -59.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308642692.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.465 kcal (2) G-P(sol) polarization free energy of solvation -63.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds