Wall clock time and date at job start Mon Mar 30 2020 02:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.46823 * 2 1 4 4 C 1.50693 * 109.46734 * 239.99857 * 2 1 3 5 5 H 1.08009 * 119.99610 * 239.99557 * 4 2 1 6 6 C 1.37871 * 120.00096 * 60.00380 * 4 2 1 7 7 N 1.31505 * 120.00209 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00012 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46894 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47508 * 119.99505 * 8 6 4 11 11 H 1.48499 * 109.47030 * 239.99843 * 8 6 4 12 12 N 1.46897 * 109.46938 * 119.99800 * 2 1 3 13 13 C 1.46902 * 111.00157 * 176.04606 * 12 2 1 14 14 C 1.46902 * 111.00416 * 300.00001 * 12 2 1 15 15 C 1.52995 * 109.47586 * 148.94972 * 14 12 2 16 16 C 1.53004 * 110.01577 * 64.00908 * 15 14 12 17 17 C 1.54265 * 110.03028 * 302.57030 * 15 14 12 18 18 C 1.54893 * 104.19400 * 217.10220 * 17 15 14 19 19 C 1.54886 * 102.74832 * 37.94223 * 18 17 15 20 20 C 1.53873 * 110.03406 * 185.40142 * 15 14 12 21 21 H 1.09008 * 109.47131 * 300.00264 * 1 2 3 22 22 H 1.08994 * 109.47039 * 59.99616 * 1 2 3 23 23 H 1.08993 * 109.47007 * 180.02562 * 1 2 3 24 24 H 0.97004 * 120.00082 * 180.02562 * 7 6 4 25 25 H 1.08999 * 109.47570 * 177.77790 * 13 12 2 26 26 H 1.09000 * 109.47010 * 57.76900 * 13 12 2 27 27 H 1.09000 * 109.46866 * 297.78095 * 13 12 2 28 28 H 1.09009 * 109.46818 * 268.95274 * 14 12 2 29 29 H 1.08997 * 109.46967 * 28.94617 * 14 12 2 30 30 H 1.08996 * 109.46794 * 48.64027 * 16 15 14 31 31 H 1.08999 * 109.47096 * 168.63771 * 16 15 14 32 32 H 1.08998 * 109.47212 * 288.63906 * 16 15 14 33 33 H 1.09001 * 110.48607 * 335.78116 * 17 15 14 34 34 H 1.09007 * 110.48575 * 98.42657 * 17 15 14 35 35 H 1.08998 * 110.76067 * 279.62545 * 18 17 15 36 36 H 1.09001 * 110.75547 * 156.25839 * 18 17 15 37 37 H 1.08996 * 110.48729 * 203.37564 * 19 18 17 38 38 H 1.09003 * 110.59937 * 80.78663 * 19 18 17 39 39 H 1.09001 * 110.03068 * 238.56928 * 20 15 14 40 40 H 1.08995 * 110.03432 * 359.95164 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4826 7 7 0.9428 0.8296 -2.6033 8 14 2.3224 -1.1196 -4.0079 9 1 3.1482 -2.2858 -3.6036 10 1 1.1677 -1.5868 -4.8164 11 1 3.1471 -0.1859 -4.8160 12 7 2.0197 -0.6924 1.1994 13 6 3.4851 -0.7945 1.1871 14 6 1.5487 -0.0263 2.4211 15 6 1.3710 -1.0637 3.5316 16 6 2.7224 -1.6862 3.8878 17 6 0.3860 -2.1606 3.0773 18 6 -0.4159 -2.5047 4.3570 19 6 -0.5898 -1.1223 5.0334 20 6 0.7505 -0.4034 4.7753 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 0.7082 1.1608 -3.4844 25 1 3.8236 -1.2760 2.1046 26 1 3.9182 0.2034 1.1192 27 1 3.8008 -1.3867 0.3282 28 1 2.2802 0.7189 2.7337 29 1 0.5943 0.4619 2.2238 30 1 3.4586 -0.8962 4.0359 31 1 2.6243 -2.2678 4.8045 32 1 3.0472 -2.3382 3.0769 33 1 -0.2783 -1.7794 2.3017 34 1 0.9283 -3.0361 2.7200 35 1 0.1507 -3.1799 4.9981 36 1 -1.3845 -2.9346 4.1019 37 1 -0.7597 -1.2399 6.1036 38 1 -1.4120 -0.5721 4.5757 39 1 1.4118 -0.5273 5.6329 40 1 0.5768 0.6562 4.5881 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308645969.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:11 Heat of formation + Delta-G solvation = -9.929390 kcal Electronic energy + Delta-G solvation = -16805.814553 eV Core-core repulsion = 14426.959349 eV Total energy + Delta-G solvation = -2378.855204 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.02388 -36.18318 -32.87989 -30.93206 -28.91040 -28.38246 -27.25333 -24.98274 -23.80515 -22.69361 -20.45544 -19.36905 -18.10974 -16.21458 -15.37593 -15.12926 -14.53393 -14.21128 -13.87628 -13.33866 -13.16632 -12.62414 -12.45045 -12.09124 -11.89201 -11.57884 -11.21904 -10.97794 -10.87334 -10.70095 -10.61689 -10.44563 -10.40636 -10.25961 -10.06626 -10.03649 -9.97414 -9.71943 -9.45744 -8.77568 -8.37648 -7.03268 -5.97264 -4.01106 3.31390 3.39197 3.43646 4.43869 4.81267 4.98938 5.02603 5.28578 5.36609 5.58783 5.68386 5.74290 5.77555 5.90810 5.95316 6.08778 6.12371 6.17701 6.21334 6.25495 6.36313 6.38891 6.50025 6.55528 6.61786 6.67341 6.84215 6.87699 6.92691 6.98989 7.12851 7.23612 7.60208 7.81420 7.88596 8.29469 8.40697 8.69954 9.06702 9.63940 11.09668 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.041299 B = 0.007151 C = 0.006834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.818804 B = 3914.346180 C = 4096.459541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.211 3.789 3 H -0.006 1.006 4 C -0.499 4.499 5 H 0.063 0.937 6 C 0.057 3.943 7 N -0.895 5.895 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.286 1.286 12 N -0.531 5.531 13 C 0.026 3.974 14 C 0.058 3.942 15 C -0.056 4.056 16 C -0.135 4.135 17 C -0.094 4.094 18 C -0.129 4.129 19 C -0.122 4.122 20 C -0.117 4.117 21 H 0.009 0.991 22 H 0.083 0.917 23 H 0.034 0.966 24 H 0.259 0.741 25 H 0.057 0.943 26 H 0.007 0.993 27 H 0.069 0.931 28 H 0.020 0.980 29 H 0.071 0.929 30 H 0.045 0.955 31 H 0.042 0.958 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.058 0.942 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.058 0.942 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.357 -3.430 12.654 13.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.105 3.895 3 H 0.012 0.988 4 C -0.538 4.538 5 H 0.081 0.919 6 C -0.144 4.144 7 N -0.534 5.534 8 Si 0.723 3.277 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.255 5.255 13 C -0.123 4.123 14 C -0.070 4.070 15 C -0.056 4.056 16 C -0.192 4.192 17 C -0.131 4.131 18 C -0.167 4.167 19 C -0.160 4.160 20 C -0.155 4.155 21 H 0.027 0.973 22 H 0.102 0.898 23 H 0.053 0.947 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.025 0.975 27 H 0.088 0.912 28 H 0.039 0.961 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.617 -3.783 12.485 13.061 hybrid contribution 0.654 0.532 -0.917 1.246 sum 0.036 -3.251 11.568 12.016 Atomic orbital electron populations 1.21873 0.97870 0.99532 0.99660 1.19242 0.92189 0.91834 0.86213 0.98845 1.21216 1.30648 1.12103 0.89816 0.91886 1.24933 0.95312 0.95108 0.99000 1.69905 1.37176 1.23186 1.23165 0.86497 0.78575 0.79613 0.83045 1.19786 1.21079 1.21234 1.62029 1.08914 1.52571 1.02009 1.22545 0.89152 0.99113 1.01452 1.22301 0.99948 0.93777 0.91013 1.21129 0.95107 0.95749 0.93663 1.22077 0.96441 1.00176 1.00540 1.22246 0.97035 0.97854 0.96005 1.22555 0.99821 0.96457 0.97830 1.22320 0.97615 0.96584 0.99454 1.22268 0.96309 0.99461 0.97435 0.97259 0.89848 0.94705 0.93146 0.92477 0.97480 0.91220 0.96138 0.91062 0.93602 0.93899 0.91312 0.90964 0.91772 0.92294 0.92277 0.92595 0.91920 0.92336 0.92198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.23 8.85 37.16 0.33 -2.90 16 2 C 0.21 5.39 2.05 -68.87 -0.14 5.25 16 3 H -0.01 -0.17 8.14 -51.93 -0.42 -0.59 16 4 C -0.50 -13.78 7.95 -34.45 -0.27 -14.05 16 5 H 0.06 1.74 6.40 -52.48 -0.34 1.40 16 6 C 0.06 1.59 5.30 -17.83 -0.09 1.50 16 7 N -0.89 -25.81 11.32 55.43 0.63 -25.18 16 8 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 9 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 12 N -0.53 -11.38 3.98 -236.28 -0.94 -12.32 16 13 C 0.03 0.52 8.63 60.07 0.52 1.03 16 14 C 0.06 1.08 3.64 -3.83 -0.01 1.06 16 15 C -0.06 -0.85 0.74 -153.39 -0.11 -0.97 16 16 C -0.14 -1.92 6.68 37.16 0.25 -1.67 16 17 C -0.09 -1.47 5.47 -25.07 -0.14 -1.60 16 18 C -0.13 -1.65 6.91 -24.74 -0.17 -1.82 16 19 C -0.12 -1.49 6.83 -25.07 -0.17 -1.66 16 20 C -0.12 -1.54 6.09 -25.61 -0.16 -1.69 16 21 H 0.01 0.19 5.97 -51.92 -0.31 -0.12 16 22 H 0.08 2.26 6.07 -51.93 -0.32 1.94 16 23 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 24 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 25 H 0.06 0.97 4.22 -51.93 -0.22 0.75 16 26 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 27 H 0.07 1.49 6.32 -51.93 -0.33 1.16 16 28 H 0.02 0.38 7.82 -51.92 -0.41 -0.03 16 29 H 0.07 1.39 5.43 -51.93 -0.28 1.11 16 30 H 0.04 0.63 7.74 -51.93 -0.40 0.23 16 31 H 0.04 0.54 8.02 -51.93 -0.42 0.12 16 32 H 0.07 1.05 6.16 -51.93 -0.32 0.73 16 33 H 0.07 1.29 7.85 -51.93 -0.41 0.88 16 34 H 0.06 1.04 7.72 -51.93 -0.40 0.64 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.71 7.61 -51.93 -0.40 0.31 16 40 H 0.06 0.80 7.67 -51.93 -0.40 0.40 16 LS Contribution 295.60 15.07 4.45 4.45 Total: -1.00 -28.00 295.60 -8.09 -36.09 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -7.03 Total: -2.03 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: -0.18 Total: -17.53 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: -0.31 Total: -37.50 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -28.00 -8.09 -36.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308645969.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.160 kcal (2) G-P(sol) polarization free energy of solvation -28.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds