Wall clock time and date at job start Mon Mar 30 2020 02:55:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.09005 * 109.46823 * 2 1
4 4 C 1.50693 * 109.46734 * 239.99857 * 2 1 3
5 5 H 1.08009 * 119.99610 * 239.99557 * 4 2 1
6 6 C 1.37871 * 120.00096 * 60.00380 * 4 2 1
7 7 N 1.31505 * 120.00209 * 359.97438 * 6 4 2
8 8 Si 1.86805 * 120.00012 * 179.97438 * 6 4 2
9 9 H 1.48507 * 109.46894 * 359.97438 * 8 6 4
10 10 H 1.48501 * 109.47508 * 119.99505 * 8 6 4
11 11 H 1.48499 * 109.47030 * 239.99843 * 8 6 4
12 12 N 1.46897 * 109.46938 * 119.99800 * 2 1 3
13 13 C 1.46902 * 111.00157 * 176.04606 * 12 2 1
14 14 C 1.46902 * 111.00416 * 300.00001 * 12 2 1
15 15 C 1.52995 * 109.47586 * 148.94972 * 14 12 2
16 16 C 1.53004 * 110.01577 * 64.00908 * 15 14 12
17 17 C 1.54265 * 110.03028 * 302.57030 * 15 14 12
18 18 C 1.54893 * 104.19400 * 217.10220 * 17 15 14
19 19 C 1.54886 * 102.74832 * 37.94223 * 18 17 15
20 20 C 1.53873 * 110.03406 * 185.40142 * 15 14 12
21 21 H 1.09008 * 109.47131 * 300.00264 * 1 2 3
22 22 H 1.08994 * 109.47039 * 59.99616 * 1 2 3
23 23 H 1.08993 * 109.47007 * 180.02562 * 1 2 3
24 24 H 0.97004 * 120.00082 * 180.02562 * 7 6 4
25 25 H 1.08999 * 109.47570 * 177.77790 * 13 12 2
26 26 H 1.09000 * 109.47010 * 57.76900 * 13 12 2
27 27 H 1.09000 * 109.46866 * 297.78095 * 13 12 2
28 28 H 1.09009 * 109.46818 * 268.95274 * 14 12 2
29 29 H 1.08997 * 109.46967 * 28.94617 * 14 12 2
30 30 H 1.08996 * 109.46794 * 48.64027 * 16 15 14
31 31 H 1.08999 * 109.47096 * 168.63771 * 16 15 14
32 32 H 1.08998 * 109.47212 * 288.63906 * 16 15 14
33 33 H 1.09001 * 110.48607 * 335.78116 * 17 15 14
34 34 H 1.09007 * 110.48575 * 98.42657 * 17 15 14
35 35 H 1.08998 * 110.76067 * 279.62545 * 18 17 15
36 36 H 1.09001 * 110.75547 * 156.25839 * 18 17 15
37 37 H 1.08996 * 110.48729 * 203.37564 * 19 18 17
38 38 H 1.09003 * 110.59937 * 80.78663 * 19 18 17
39 39 H 1.09001 * 110.03068 * 238.56928 * 20 15 14
40 40 H 1.08995 * 110.03432 * 359.95164 * 20 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7104 -1.2304
5 1 2.6533 -1.5886 -1.1313
6 6 1.6992 -0.2394 -2.4826
7 7 0.9428 0.8296 -2.6033
8 14 2.3224 -1.1196 -4.0079
9 1 3.1482 -2.2858 -3.6036
10 1 1.1677 -1.5868 -4.8164
11 1 3.1471 -0.1859 -4.8160
12 7 2.0197 -0.6924 1.1994
13 6 3.4851 -0.7945 1.1871
14 6 1.5487 -0.0263 2.4211
15 6 1.3710 -1.0637 3.5316
16 6 2.7224 -1.6862 3.8878
17 6 0.3860 -2.1606 3.0773
18 6 -0.4159 -2.5047 4.3570
19 6 -0.5898 -1.1223 5.0334
20 6 0.7505 -0.4034 4.7753
21 1 -0.3634 0.5139 0.8900
22 1 -0.3633 0.5139 -0.8899
23 1 -0.3633 -1.0276 0.0005
24 1 0.7082 1.1608 -3.4844
25 1 3.8236 -1.2760 2.1046
26 1 3.9182 0.2034 1.1192
27 1 3.8008 -1.3867 0.3282
28 1 2.2802 0.7189 2.7337
29 1 0.5943 0.4619 2.2238
30 1 3.4586 -0.8962 4.0359
31 1 2.6243 -2.2678 4.8045
32 1 3.0472 -2.3382 3.0769
33 1 -0.2783 -1.7794 2.3017
34 1 0.9283 -3.0361 2.7200
35 1 0.1507 -3.1799 4.9981
36 1 -1.3845 -2.9346 4.1019
37 1 -0.7597 -1.2399 6.1036
38 1 -1.4120 -0.5721 4.5757
39 1 1.4118 -0.5273 5.6329
40 1 0.5768 0.6562 4.5881
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000308645969.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:55:11
Heat of formation + Delta-G solvation = -25.322917 kcal
Electronic energy + Delta-G solvation = -16806.482067 eV
Core-core repulsion = 14426.959349 eV
Total energy + Delta-G solvation = -2379.522718 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 225.179 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-40.35120 -37.82136 -34.81858 -32.39312 -30.71817 -29.48453 -28.83249 -26.88486
-25.22288 -24.38358 -21.66103 -21.06796 -19.42299 -18.28283 -17.12559 -16.41650
-15.99572 -15.79732 -15.47806 -14.87310 -14.57058 -14.22429 -14.03236 -13.51585
-13.27589 -13.19384 -12.87717 -12.85251 -12.53993 -12.20351 -12.07907 -12.02405
-11.89050 -11.80214 -11.69811 -11.33349 -11.26815 -11.15193 -11.02522 -10.71653
-10.49949 -8.83057 -8.11204 -6.22745 1.39981 1.41633 1.53566 2.41942
3.16832 3.39815 3.87174 3.87934 3.97099 4.34614 4.50514 4.58708
4.62962 4.64859 4.73629 4.76664 4.79912 4.84845 4.93402 5.00175
5.05243 5.07956 5.09532 5.12293 5.25583 5.26466 5.35991 5.37217
5.42030 5.52631 5.59470 5.67304 5.69993 5.76332 5.84031 6.27577
6.45586 6.81620 6.94290 7.46772 8.95153
Molecular weight = 225.18amu
Principal moments of inertia in cm(-1)
A = 0.041299 B = 0.007151 C = 0.006834
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 677.818804 B = 3914.346180 C = 4096.459541
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.116 4.116
2 C 0.216 3.784
3 H -0.046 1.046
4 C -0.516 4.516
5 H 0.059 0.941
6 C 0.009 3.991
7 N -0.923 5.923
8 Si 0.960 3.040
9 H -0.267 1.267
10 H -0.280 1.280
11 H -0.282 1.282
12 N -0.532 5.532
13 C 0.029 3.971
14 C 0.059 3.941
15 C -0.054 4.054
16 C -0.132 4.132
17 C -0.096 4.096
18 C -0.121 4.121
19 C -0.119 4.119
20 C -0.114 4.114
21 H 0.028 0.972
22 H 0.057 0.943
23 H 0.031 0.969
24 H 0.261 0.739
25 H 0.091 0.909
26 H -0.004 1.004
27 H 0.053 0.947
28 H 0.021 0.979
29 H 0.056 0.944
30 H 0.050 0.950
31 H 0.066 0.934
32 H 0.055 0.945
33 H 0.042 0.958
34 H 0.053 0.947
35 H 0.075 0.925
36 H 0.064 0.936
37 H 0.079 0.921
38 H 0.056 0.944
39 H 0.078 0.922
40 H 0.055 0.945
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.051 -4.569 14.277 14.991
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.174 4.174
2 C 0.109 3.891
3 H -0.028 1.028
4 C -0.554 4.554
5 H 0.077 0.923
6 C -0.189 4.189
7 N -0.563 5.563
8 Si 0.785 3.215
9 H -0.191 1.191
10 H -0.206 1.206
11 H -0.208 1.208
12 N -0.256 5.256
13 C -0.119 4.119
14 C -0.069 4.069
15 C -0.054 4.054
16 C -0.189 4.189
17 C -0.134 4.134
18 C -0.159 4.159
19 C -0.157 4.157
20 C -0.152 4.152
21 H 0.047 0.953
22 H 0.076 0.924
23 H 0.050 0.950
24 H 0.070 0.930
25 H 0.110 0.890
26 H 0.015 0.985
27 H 0.071 0.929
28 H 0.039 0.961
29 H 0.075 0.925
30 H 0.069 0.931
31 H 0.085 0.915
32 H 0.074 0.926
33 H 0.061 0.939
34 H 0.072 0.928
35 H 0.093 0.907
36 H 0.083 0.917
37 H 0.098 0.902
38 H 0.075 0.925
39 H 0.096 0.904
40 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -0.309 -4.927 14.128 14.966
hybrid contribution 0.563 0.913 -1.389 1.755
sum 0.254 -4.014 12.739 13.359
Atomic orbital electron populations
1.21651 0.97393 0.99053 0.99296 1.19046 0.92533 0.89806 0.87731
1.02832 1.21480 1.30802 1.12129 0.90990 0.92282 1.25731 0.95450
0.95796 1.01971 1.70034 1.37994 1.24361 1.23898 0.85478 0.78121
0.78601 0.79253 1.19132 1.20572 1.20758 1.62014 1.09758 1.52077
1.01712 1.22571 0.88260 0.98547 1.02512 1.22392 0.98896 0.94849
0.90774 1.21125 0.96155 0.94819 0.93338 1.22021 0.95525 1.00246
1.01138 1.22191 0.96948 0.97400 0.96818 1.22517 0.99794 0.97227
0.96354 1.22320 0.96754 0.95771 1.00841 1.22252 0.97113 0.99074
0.96737 0.95340 0.92443 0.95035 0.93020 0.89045 0.98495 0.92866
0.96099 0.92528 0.93123 0.91498 0.92647 0.93895 0.92805 0.90677
0.91735 0.90189 0.92533 0.90379 0.92635
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.87 8.85 71.98 0.64 -5.23 16
2 C 0.22 11.35 2.05 44.17 0.09 11.45 16
3 H -0.05 -2.72 8.14 -2.38 -0.02 -2.74 16
4 C -0.52 -29.06 7.95 25.60 0.20 -28.85 16
5 H 0.06 3.31 6.40 -2.91 -0.02 3.29 16
6 C 0.01 0.49 5.30 84.65 0.45 0.94 16
7 N -0.92 -54.37 11.32 21.44 0.24 -54.13 16
8 Si 0.96 44.53 29.54 68.60 2.03 46.56 16
9 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16
10 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16
11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16
12 N -0.53 -23.07 3.98 -901.46 -3.59 -26.66 16
13 C 0.03 1.17 8.63 127.69 1.10 2.27 16
14 C 0.06 2.17 3.64 86.30 0.31 2.49 16
15 C -0.05 -1.55 0.74 -51.46 -0.04 -1.59 16
16 C -0.13 -3.40 6.68 71.98 0.48 -2.92 16
17 C -0.10 -2.89 5.47 31.67 0.17 -2.71 16
18 C -0.12 -2.78 6.91 31.89 0.22 -2.56 16
19 C -0.12 -2.55 6.83 31.67 0.22 -2.33 16
20 C -0.11 -2.68 6.09 31.32 0.19 -2.49 16
21 H 0.03 1.28 5.97 -2.38 -0.01 1.27 16
22 H 0.06 3.20 6.07 -2.39 -0.01 3.19 16
23 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16
24 H 0.26 14.55 8.31 -92.71 -0.77 13.77 16
25 H 0.09 3.01 4.22 -2.39 -0.01 3.00 16
26 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16
27 H 0.05 2.29 6.32 -2.39 -0.02 2.27 16
28 H 0.02 0.76 7.82 -2.38 -0.02 0.74 16
29 H 0.06 2.23 5.43 -2.39 -0.01 2.22 16
30 H 0.05 1.25 7.74 -2.39 -0.02 1.23 16
31 H 0.07 1.42 8.02 -2.39 -0.02 1.40 16
32 H 0.05 1.57 6.16 -2.39 -0.01 1.55 16
33 H 0.04 1.53 7.85 -2.39 -0.02 1.51 16
34 H 0.05 1.70 7.72 -2.38 -0.02 1.68 16
35 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16
36 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16
37 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16
38 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16
39 H 0.08 1.56 7.61 -2.39 -0.02 1.55 16
40 H 0.05 1.36 7.67 -2.39 -0.02 1.34 16
Total: -1.00 -60.76 295.60 3.70 -57.06
By element:
Atomic # 1 Polarization: 7.73 SS G_CDS: 0.98 Total: 8.72 kcal
Atomic # 6 Polarization: -35.58 SS G_CDS: 4.04 Total: -31.54 kcal
Atomic # 7 Polarization: -77.44 SS G_CDS: -3.35 Total: -80.79 kcal
Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal
Total: -60.76 3.70 -57.06 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000308645969.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 31.734 kcal
(2) G-P(sol) polarization free energy of solvation -60.759 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.025 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.702 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.057 kcal
(6) G-S(sol) free energy of system = (1) + (5) -25.323 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds