Wall clock time and date at job start Mon Mar 30 2020 02:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.46823 * 2 1 4 4 C 1.50693 * 109.46734 * 239.99857 * 2 1 3 5 5 H 1.08009 * 119.99610 * 239.99557 * 4 2 1 6 6 C 1.37871 * 120.00096 * 60.00380 * 4 2 1 7 7 N 1.31505 * 120.00209 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00012 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.46894 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47508 * 119.99505 * 8 6 4 11 11 H 1.48499 * 109.47030 * 239.99843 * 8 6 4 12 12 N 1.46897 * 109.46938 * 119.99800 * 2 1 3 13 13 C 1.46902 * 111.00157 * 176.04606 * 12 2 1 14 14 C 1.46902 * 111.00416 * 300.00001 * 12 2 1 15 15 C 1.52995 * 109.47586 * 148.94972 * 14 12 2 16 16 C 1.53004 * 110.01577 * 64.00908 * 15 14 12 17 17 C 1.54265 * 110.03028 * 302.57030 * 15 14 12 18 18 C 1.54893 * 104.19400 * 217.10220 * 17 15 14 19 19 C 1.54886 * 102.74832 * 37.94223 * 18 17 15 20 20 C 1.53873 * 110.03406 * 185.40142 * 15 14 12 21 21 H 1.09008 * 109.47131 * 300.00264 * 1 2 3 22 22 H 1.08994 * 109.47039 * 59.99616 * 1 2 3 23 23 H 1.08993 * 109.47007 * 180.02562 * 1 2 3 24 24 H 0.97004 * 120.00082 * 180.02562 * 7 6 4 25 25 H 1.08999 * 109.47570 * 177.77790 * 13 12 2 26 26 H 1.09000 * 109.47010 * 57.76900 * 13 12 2 27 27 H 1.09000 * 109.46866 * 297.78095 * 13 12 2 28 28 H 1.09009 * 109.46818 * 268.95274 * 14 12 2 29 29 H 1.08997 * 109.46967 * 28.94617 * 14 12 2 30 30 H 1.08996 * 109.46794 * 48.64027 * 16 15 14 31 31 H 1.08999 * 109.47096 * 168.63771 * 16 15 14 32 32 H 1.08998 * 109.47212 * 288.63906 * 16 15 14 33 33 H 1.09001 * 110.48607 * 335.78116 * 17 15 14 34 34 H 1.09007 * 110.48575 * 98.42657 * 17 15 14 35 35 H 1.08998 * 110.76067 * 279.62545 * 18 17 15 36 36 H 1.09001 * 110.75547 * 156.25839 * 18 17 15 37 37 H 1.08996 * 110.48729 * 203.37564 * 19 18 17 38 38 H 1.09003 * 110.59937 * 80.78663 * 19 18 17 39 39 H 1.09001 * 110.03068 * 238.56928 * 20 15 14 40 40 H 1.08995 * 110.03432 * 359.95164 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4826 7 7 0.9428 0.8296 -2.6033 8 14 2.3224 -1.1196 -4.0079 9 1 3.1482 -2.2858 -3.6036 10 1 1.1677 -1.5868 -4.8164 11 1 3.1471 -0.1859 -4.8160 12 7 2.0197 -0.6924 1.1994 13 6 3.4851 -0.7945 1.1871 14 6 1.5487 -0.0263 2.4211 15 6 1.3710 -1.0637 3.5316 16 6 2.7224 -1.6862 3.8878 17 6 0.3860 -2.1606 3.0773 18 6 -0.4159 -2.5047 4.3570 19 6 -0.5898 -1.1223 5.0334 20 6 0.7505 -0.4034 4.7753 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 0.7082 1.1608 -3.4844 25 1 3.8236 -1.2760 2.1046 26 1 3.9182 0.2034 1.1192 27 1 3.8008 -1.3867 0.3282 28 1 2.2802 0.7189 2.7337 29 1 0.5943 0.4619 2.2238 30 1 3.4586 -0.8962 4.0359 31 1 2.6243 -2.2678 4.8045 32 1 3.0472 -2.3382 3.0769 33 1 -0.2783 -1.7794 2.3017 34 1 0.9283 -3.0361 2.7200 35 1 0.1507 -3.1799 4.9981 36 1 -1.3845 -2.9346 4.1019 37 1 -0.7597 -1.2399 6.1036 38 1 -1.4120 -0.5721 4.5757 39 1 1.4118 -0.5273 5.6329 40 1 0.5768 0.6562 4.5881 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308645969.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:11 Heat of formation + Delta-G solvation = -25.322917 kcal Electronic energy + Delta-G solvation = -16806.482067 eV Core-core repulsion = 14426.959349 eV Total energy + Delta-G solvation = -2379.522718 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.35120 -37.82136 -34.81858 -32.39312 -30.71817 -29.48453 -28.83249 -26.88486 -25.22288 -24.38358 -21.66103 -21.06796 -19.42299 -18.28283 -17.12559 -16.41650 -15.99572 -15.79732 -15.47806 -14.87310 -14.57058 -14.22429 -14.03236 -13.51585 -13.27589 -13.19384 -12.87717 -12.85251 -12.53993 -12.20351 -12.07907 -12.02405 -11.89050 -11.80214 -11.69811 -11.33349 -11.26815 -11.15193 -11.02522 -10.71653 -10.49949 -8.83057 -8.11204 -6.22745 1.39981 1.41633 1.53566 2.41942 3.16832 3.39815 3.87174 3.87934 3.97099 4.34614 4.50514 4.58708 4.62962 4.64859 4.73629 4.76664 4.79912 4.84845 4.93402 5.00175 5.05243 5.07956 5.09532 5.12293 5.25583 5.26466 5.35991 5.37217 5.42030 5.52631 5.59470 5.67304 5.69993 5.76332 5.84031 6.27577 6.45586 6.81620 6.94290 7.46772 8.95153 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.041299 B = 0.007151 C = 0.006834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.818804 B = 3914.346180 C = 4096.459541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.216 3.784 3 H -0.046 1.046 4 C -0.516 4.516 5 H 0.059 0.941 6 C 0.009 3.991 7 N -0.923 5.923 8 Si 0.960 3.040 9 H -0.267 1.267 10 H -0.280 1.280 11 H -0.282 1.282 12 N -0.532 5.532 13 C 0.029 3.971 14 C 0.059 3.941 15 C -0.054 4.054 16 C -0.132 4.132 17 C -0.096 4.096 18 C -0.121 4.121 19 C -0.119 4.119 20 C -0.114 4.114 21 H 0.028 0.972 22 H 0.057 0.943 23 H 0.031 0.969 24 H 0.261 0.739 25 H 0.091 0.909 26 H -0.004 1.004 27 H 0.053 0.947 28 H 0.021 0.979 29 H 0.056 0.944 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.042 0.958 34 H 0.053 0.947 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.056 0.944 39 H 0.078 0.922 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.051 -4.569 14.277 14.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.109 3.891 3 H -0.028 1.028 4 C -0.554 4.554 5 H 0.077 0.923 6 C -0.189 4.189 7 N -0.563 5.563 8 Si 0.785 3.215 9 H -0.191 1.191 10 H -0.206 1.206 11 H -0.208 1.208 12 N -0.256 5.256 13 C -0.119 4.119 14 C -0.069 4.069 15 C -0.054 4.054 16 C -0.189 4.189 17 C -0.134 4.134 18 C -0.159 4.159 19 C -0.157 4.157 20 C -0.152 4.152 21 H 0.047 0.953 22 H 0.076 0.924 23 H 0.050 0.950 24 H 0.070 0.930 25 H 0.110 0.890 26 H 0.015 0.985 27 H 0.071 0.929 28 H 0.039 0.961 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.098 0.902 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.309 -4.927 14.128 14.966 hybrid contribution 0.563 0.913 -1.389 1.755 sum 0.254 -4.014 12.739 13.359 Atomic orbital electron populations 1.21651 0.97393 0.99053 0.99296 1.19046 0.92533 0.89806 0.87731 1.02832 1.21480 1.30802 1.12129 0.90990 0.92282 1.25731 0.95450 0.95796 1.01971 1.70034 1.37994 1.24361 1.23898 0.85478 0.78121 0.78601 0.79253 1.19132 1.20572 1.20758 1.62014 1.09758 1.52077 1.01712 1.22571 0.88260 0.98547 1.02512 1.22392 0.98896 0.94849 0.90774 1.21125 0.96155 0.94819 0.93338 1.22021 0.95525 1.00246 1.01138 1.22191 0.96948 0.97400 0.96818 1.22517 0.99794 0.97227 0.96354 1.22320 0.96754 0.95771 1.00841 1.22252 0.97113 0.99074 0.96737 0.95340 0.92443 0.95035 0.93020 0.89045 0.98495 0.92866 0.96099 0.92528 0.93123 0.91498 0.92647 0.93895 0.92805 0.90677 0.91735 0.90189 0.92533 0.90379 0.92635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.87 8.85 71.98 0.64 -5.23 16 2 C 0.22 11.35 2.05 44.17 0.09 11.45 16 3 H -0.05 -2.72 8.14 -2.38 -0.02 -2.74 16 4 C -0.52 -29.06 7.95 25.60 0.20 -28.85 16 5 H 0.06 3.31 6.40 -2.91 -0.02 3.29 16 6 C 0.01 0.49 5.30 84.65 0.45 0.94 16 7 N -0.92 -54.37 11.32 21.44 0.24 -54.13 16 8 Si 0.96 44.53 29.54 68.60 2.03 46.56 16 9 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 N -0.53 -23.07 3.98 -901.46 -3.59 -26.66 16 13 C 0.03 1.17 8.63 127.69 1.10 2.27 16 14 C 0.06 2.17 3.64 86.30 0.31 2.49 16 15 C -0.05 -1.55 0.74 -51.46 -0.04 -1.59 16 16 C -0.13 -3.40 6.68 71.98 0.48 -2.92 16 17 C -0.10 -2.89 5.47 31.67 0.17 -2.71 16 18 C -0.12 -2.78 6.91 31.89 0.22 -2.56 16 19 C -0.12 -2.55 6.83 31.67 0.22 -2.33 16 20 C -0.11 -2.68 6.09 31.32 0.19 -2.49 16 21 H 0.03 1.28 5.97 -2.38 -0.01 1.27 16 22 H 0.06 3.20 6.07 -2.39 -0.01 3.19 16 23 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 24 H 0.26 14.55 8.31 -92.71 -0.77 13.77 16 25 H 0.09 3.01 4.22 -2.39 -0.01 3.00 16 26 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 27 H 0.05 2.29 6.32 -2.39 -0.02 2.27 16 28 H 0.02 0.76 7.82 -2.38 -0.02 0.74 16 29 H 0.06 2.23 5.43 -2.39 -0.01 2.22 16 30 H 0.05 1.25 7.74 -2.39 -0.02 1.23 16 31 H 0.07 1.42 8.02 -2.39 -0.02 1.40 16 32 H 0.05 1.57 6.16 -2.39 -0.01 1.55 16 33 H 0.04 1.53 7.85 -2.39 -0.02 1.51 16 34 H 0.05 1.70 7.72 -2.38 -0.02 1.68 16 35 H 0.07 1.50 8.14 -2.39 -0.02 1.49 16 36 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.08 1.56 7.61 -2.39 -0.02 1.55 16 40 H 0.05 1.36 7.67 -2.39 -0.02 1.34 16 Total: -1.00 -60.76 295.60 3.70 -57.06 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: 0.98 Total: 8.72 kcal Atomic # 6 Polarization: -35.58 SS G_CDS: 4.04 Total: -31.54 kcal Atomic # 7 Polarization: -77.44 SS G_CDS: -3.35 Total: -80.79 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -60.76 3.70 -57.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308645969.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.734 kcal (2) G-P(sol) polarization free energy of solvation -60.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds