Wall clock time and date at job start Mon Mar 30 2020 02:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47002 * 2 1 4 4 C 1.50706 * 109.47063 * 240.00367 * 2 1 3 5 5 H 1.07995 * 119.99838 * 239.99845 * 4 2 1 6 6 C 1.37874 * 120.00105 * 59.99491 * 4 2 1 7 7 N 1.31518 * 120.00030 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00225 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46948 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47245 * 120.00078 * 8 6 4 11 11 H 1.48492 * 109.47166 * 240.00461 * 8 6 4 12 12 N 1.46897 * 109.47692 * 120.00005 * 2 1 3 13 13 C 1.46890 * 111.00347 * 251.23015 * 12 2 1 14 14 C 1.52998 * 109.47167 * 295.14753 * 13 12 2 15 15 C 1.52999 * 109.47387 * 55.14630 * 13 12 2 16 16 C 1.53004 * 109.47318 * 175.14667 * 13 12 2 17 17 C 1.54888 * 110.75354 * 288.95868 * 16 13 12 18 18 C 1.54271 * 104.19473 * 203.74124 * 17 16 13 19 19 C 1.53876 * 106.59721 * 23.61068 * 18 17 16 20 20 C 1.54266 * 106.59982 * 0.02562 * 19 18 17 21 21 H 1.08997 * 109.47701 * 55.67783 * 1 2 3 22 22 H 1.09001 * 109.47151 * 175.67780 * 1 2 3 23 23 H 1.08998 * 109.46917 * 295.67514 * 1 2 3 24 24 H 0.96999 * 120.00214 * 179.97438 * 7 6 4 25 25 H 1.00902 * 110.99809 * 15.18738 * 12 2 1 26 26 H 1.08999 * 109.47486 * 67.23082 * 14 13 12 27 27 H 1.09002 * 109.47590 * 187.23497 * 14 13 12 28 28 H 1.09006 * 109.46837 * 307.23375 * 14 13 12 29 29 H 1.08994 * 109.47248 * 53.13171 * 15 13 12 30 30 H 1.08999 * 109.47592 * 173.13672 * 15 13 12 31 31 H 1.09009 * 109.46844 * 293.13430 * 15 13 12 32 32 H 1.08994 * 110.67182 * 52.39768 * 16 13 12 33 33 H 1.08997 * 110.48802 * 322.42053 * 17 16 13 34 34 H 1.09003 * 110.48349 * 85.07084 * 17 16 13 35 35 H 1.09000 * 110.03036 * 264.33022 * 18 17 16 36 36 H 1.08997 * 110.06994 * 142.91768 * 18 17 16 37 37 H 1.08997 * 110.03240 * 240.71300 * 19 18 17 38 38 H 1.09004 * 110.06854 * 119.30544 * 19 18 17 39 39 H 1.08998 * 110.48672 * 217.70770 * 20 19 18 40 40 H 1.08996 * 110.49226 * 95.06211 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3212 -1.1202 -4.0081 9 1 3.1454 -2.2876 -3.6040 10 1 1.1659 -1.5865 -4.8162 11 1 3.1464 -0.1872 -4.8166 12 7 2.0198 -0.6925 1.1994 13 6 2.6113 0.2573 2.1510 14 6 3.8581 0.8911 1.5307 15 6 1.5931 1.3511 2.4796 16 6 2.9989 -0.4807 3.4340 17 6 1.7372 -0.8962 4.2306 18 6 2.2374 -1.0410 5.6828 19 6 3.5016 -0.1717 5.8010 20 6 3.7251 0.4715 4.4168 21 1 -0.3634 0.5794 -0.8487 22 1 -0.3633 -1.0247 -0.0775 23 1 -0.3633 0.4453 0.9262 24 1 0.7093 1.1619 -3.4844 25 1 1.2832 -1.2282 1.6337 26 1 3.5658 1.5218 0.6911 27 1 4.3688 1.4966 2.2795 28 1 4.5281 0.1062 1.1795 29 1 0.6602 0.8924 2.8070 30 1 1.9849 1.9853 3.2748 31 1 1.4089 1.9548 1.5909 32 1 3.6188 -1.3479 3.2067 33 1 0.9729 -0.1219 4.1658 34 1 1.3505 -1.8471 3.8638 35 1 2.4799 -2.0829 5.8920 36 1 1.4754 -0.6884 6.3778 37 1 4.3575 -0.7917 6.0677 38 1 3.3536 0.6034 6.5530 39 1 4.7892 0.5187 4.1854 40 1 3.2818 1.4666 4.3823 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308668236.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:20 Heat of formation + Delta-G solvation = -20.549374 kcal Electronic energy + Delta-G solvation = -16749.297691 eV Core-core repulsion = 14369.981970 eV Total energy + Delta-G solvation = -2379.315721 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.21978 -36.04698 -33.15263 -30.82045 -28.76667 -27.32365 -27.15707 -26.48910 -24.92552 -21.68470 -20.09051 -19.76314 -17.84069 -16.48892 -15.66776 -15.10782 -14.58479 -14.34756 -13.54550 -13.37398 -13.08075 -12.80165 -12.15923 -12.13818 -11.57462 -11.41480 -11.25595 -11.06847 -10.95618 -10.81518 -10.75682 -10.70962 -10.63486 -10.29022 -10.13105 -10.12063 -9.93729 -9.76636 -9.40472 -8.91636 -8.26711 -7.08685 -5.89594 -3.90991 3.35886 3.43604 3.49433 4.50805 4.78679 4.82496 4.89548 5.29245 5.41560 5.50509 5.58593 5.67946 5.76301 5.80722 5.86061 5.94073 5.98014 6.05929 6.09133 6.20624 6.29217 6.36076 6.48052 6.48604 6.56331 6.60741 6.73946 6.79349 6.92625 6.95506 7.05865 7.21523 7.53951 7.80668 8.01928 8.41106 8.69254 8.76854 9.17305 9.73774 11.17236 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.046752 B = 0.006704 C = 0.006549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.764553 B = 4175.453108 C = 4274.149760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.209 3.791 3 H 0.033 0.967 4 C -0.485 4.485 5 H 0.061 0.939 6 C 0.051 3.949 7 N -0.901 5.901 8 Si 0.893 3.107 9 H -0.274 1.274 10 H -0.287 1.287 11 H -0.287 1.287 12 N -0.675 5.675 13 C 0.121 3.879 14 C -0.132 4.132 15 C -0.180 4.180 16 C -0.077 4.077 17 C -0.128 4.128 18 C -0.123 4.123 19 C -0.124 4.124 20 C -0.121 4.121 21 H 0.084 0.916 22 H 0.029 0.971 23 H 0.006 0.994 24 H 0.257 0.743 25 H 0.320 0.680 26 H 0.059 0.941 27 H 0.043 0.957 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.047 0.953 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.062 0.938 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.672 -0.268 13.791 14.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.102 3.898 3 H 0.051 0.949 4 C -0.524 4.524 5 H 0.080 0.920 6 C -0.148 4.148 7 N -0.542 5.542 8 Si 0.721 3.279 9 H -0.198 1.198 10 H -0.213 1.213 11 H -0.213 1.213 12 N -0.305 5.305 13 C 0.030 3.970 14 C -0.189 4.189 15 C -0.238 4.238 16 C -0.095 4.095 17 C -0.166 4.166 18 C -0.160 4.160 19 C -0.161 4.161 20 C -0.159 4.159 21 H 0.103 0.897 22 H 0.048 0.952 23 H 0.025 0.975 24 H 0.066 0.934 25 H 0.137 0.863 26 H 0.078 0.922 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.213 -0.336 13.352 13.737 hybrid contribution -0.643 0.032 -0.587 0.871 sum 2.570 -0.304 12.765 13.025 Atomic orbital electron populations 1.22382 1.00271 0.99857 0.99573 1.19217 0.89767 0.94144 0.86703 0.94913 1.21316 1.29460 1.11974 0.89619 0.92040 1.24960 0.95605 0.95293 0.98942 1.69904 1.37880 1.23424 1.22968 0.86520 0.78469 0.79698 0.83171 1.19822 1.21347 1.21313 1.60923 1.37389 1.25339 1.06805 1.20761 0.94308 0.91001 0.90978 1.21820 0.96985 1.00290 0.99837 1.22757 0.99593 1.00113 1.01367 1.22139 0.95985 0.98020 0.93405 1.22569 0.98310 1.01524 0.94167 1.22111 0.97106 0.99518 0.97305 1.22125 0.97720 0.98710 0.97591 1.22503 1.00209 0.99205 0.93944 0.89734 0.95214 0.97495 0.93351 0.86281 0.92219 0.93818 0.92235 0.93015 0.93377 0.92062 0.90276 0.91172 0.91774 0.92321 0.92524 0.92326 0.92499 0.91934 0.91392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.91 8.66 37.16 0.32 -3.58 16 2 C 0.21 5.18 1.66 -68.86 -0.11 5.06 16 3 H 0.03 0.88 4.83 -51.93 -0.25 0.63 16 4 C -0.48 -13.52 8.84 -34.44 -0.30 -13.83 16 5 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 6 C 0.05 1.45 5.30 -17.82 -0.09 1.35 16 7 N -0.90 -26.05 11.37 55.43 0.63 -25.42 16 8 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 9 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 N -0.68 -14.16 5.99 -94.25 -0.56 -14.73 16 13 C 0.12 2.13 0.53 -131.61 -0.07 2.06 16 14 C -0.13 -2.39 8.17 37.16 0.30 -2.09 16 15 C -0.18 -3.04 6.49 37.16 0.24 -2.80 16 16 C -0.08 -1.13 2.49 -88.61 -0.22 -1.35 16 17 C -0.13 -1.71 5.47 -25.07 -0.14 -1.85 16 18 C -0.12 -1.39 6.80 -25.61 -0.17 -1.56 16 19 C -0.12 -1.36 6.80 -25.61 -0.17 -1.54 16 20 C -0.12 -1.52 4.87 -25.06 -0.12 -1.64 16 21 H 0.08 2.27 6.20 -51.93 -0.32 1.94 16 22 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.01 0.13 6.84 -51.93 -0.36 -0.22 16 24 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 25 H 0.32 6.42 7.35 -39.29 -0.29 6.13 16 26 H 0.06 1.23 6.64 -51.93 -0.34 0.88 16 27 H 0.04 0.67 6.69 -51.93 -0.35 0.32 16 28 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.05 0.85 5.84 -51.93 -0.30 0.55 16 30 H 0.05 0.71 6.12 -51.93 -0.32 0.39 16 31 H 0.06 1.18 6.60 -51.92 -0.34 0.84 16 32 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 33 H 0.07 0.96 5.57 -51.93 -0.29 0.67 16 34 H 0.06 0.87 7.98 -51.93 -0.41 0.46 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.76 7.84 -51.93 -0.41 0.36 16 40 H 0.07 0.86 6.05 -51.93 -0.31 0.55 16 LS Contribution 291.96 15.07 4.40 4.40 Total: -1.00 -28.06 291.96 -7.90 -35.96 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -6.80 Total: 4.70 kcal Atomic # 6 Polarization: -21.22 SS G_CDS: -0.54 Total: -21.76 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.07 Total: -40.15 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -28.06 -7.90 -35.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308668236.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.415 kcal (2) G-P(sol) polarization free energy of solvation -28.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds