Wall clock time and date at job start Mon Mar 30 2020 02:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47002 * 2 1 4 4 C 1.50706 * 109.47063 * 240.00367 * 2 1 3 5 5 H 1.07995 * 119.99838 * 239.99845 * 4 2 1 6 6 C 1.37874 * 120.00105 * 59.99491 * 4 2 1 7 7 N 1.31518 * 120.00030 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00225 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46948 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47245 * 120.00078 * 8 6 4 11 11 H 1.48492 * 109.47166 * 240.00461 * 8 6 4 12 12 N 1.46897 * 109.47692 * 120.00005 * 2 1 3 13 13 C 1.46890 * 111.00347 * 251.23015 * 12 2 1 14 14 C 1.52998 * 109.47167 * 295.14753 * 13 12 2 15 15 C 1.52999 * 109.47387 * 55.14630 * 13 12 2 16 16 C 1.53004 * 109.47318 * 175.14667 * 13 12 2 17 17 C 1.54888 * 110.75354 * 288.95868 * 16 13 12 18 18 C 1.54271 * 104.19473 * 203.74124 * 17 16 13 19 19 C 1.53876 * 106.59721 * 23.61068 * 18 17 16 20 20 C 1.54266 * 106.59982 * 0.02562 * 19 18 17 21 21 H 1.08997 * 109.47701 * 55.67783 * 1 2 3 22 22 H 1.09001 * 109.47151 * 175.67780 * 1 2 3 23 23 H 1.08998 * 109.46917 * 295.67514 * 1 2 3 24 24 H 0.96999 * 120.00214 * 179.97438 * 7 6 4 25 25 H 1.00902 * 110.99809 * 15.18738 * 12 2 1 26 26 H 1.08999 * 109.47486 * 67.23082 * 14 13 12 27 27 H 1.09002 * 109.47590 * 187.23497 * 14 13 12 28 28 H 1.09006 * 109.46837 * 307.23375 * 14 13 12 29 29 H 1.08994 * 109.47248 * 53.13171 * 15 13 12 30 30 H 1.08999 * 109.47592 * 173.13672 * 15 13 12 31 31 H 1.09009 * 109.46844 * 293.13430 * 15 13 12 32 32 H 1.08994 * 110.67182 * 52.39768 * 16 13 12 33 33 H 1.08997 * 110.48802 * 322.42053 * 17 16 13 34 34 H 1.09003 * 110.48349 * 85.07084 * 17 16 13 35 35 H 1.09000 * 110.03036 * 264.33022 * 18 17 16 36 36 H 1.08997 * 110.06994 * 142.91768 * 18 17 16 37 37 H 1.08997 * 110.03240 * 240.71300 * 19 18 17 38 38 H 1.09004 * 110.06854 * 119.30544 * 19 18 17 39 39 H 1.08998 * 110.48672 * 217.70770 * 20 19 18 40 40 H 1.08996 * 110.49226 * 95.06211 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3212 -1.1202 -4.0081 9 1 3.1454 -2.2876 -3.6040 10 1 1.1659 -1.5865 -4.8162 11 1 3.1464 -0.1872 -4.8166 12 7 2.0198 -0.6925 1.1994 13 6 2.6113 0.2573 2.1510 14 6 3.8581 0.8911 1.5307 15 6 1.5931 1.3511 2.4796 16 6 2.9989 -0.4807 3.4340 17 6 1.7372 -0.8962 4.2306 18 6 2.2374 -1.0410 5.6828 19 6 3.5016 -0.1717 5.8010 20 6 3.7251 0.4715 4.4168 21 1 -0.3634 0.5794 -0.8487 22 1 -0.3633 -1.0247 -0.0775 23 1 -0.3633 0.4453 0.9262 24 1 0.7093 1.1619 -3.4844 25 1 1.2832 -1.2282 1.6337 26 1 3.5658 1.5218 0.6911 27 1 4.3688 1.4966 2.2795 28 1 4.5281 0.1062 1.1795 29 1 0.6602 0.8924 2.8070 30 1 1.9849 1.9853 3.2748 31 1 1.4089 1.9548 1.5909 32 1 3.6188 -1.3479 3.2067 33 1 0.9729 -0.1219 4.1658 34 1 1.3505 -1.8471 3.8638 35 1 2.4799 -2.0829 5.8920 36 1 1.4754 -0.6884 6.3778 37 1 4.3575 -0.7917 6.0677 38 1 3.3536 0.6034 6.5530 39 1 4.7892 0.5187 4.1854 40 1 3.2818 1.4666 4.3823 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308668236.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:19 Heat of formation + Delta-G solvation = -36.747717 kcal Electronic energy + Delta-G solvation = -16750.000104 eV Core-core repulsion = 14369.981970 eV Total energy + Delta-G solvation = -2380.018134 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.51948 -37.50135 -34.99983 -32.63697 -29.88876 -28.85840 -28.44434 -27.98220 -27.00712 -23.16437 -21.58066 -20.90137 -19.21809 -18.40105 -17.08649 -16.69074 -16.21404 -15.67752 -15.07092 -14.79660 -14.60885 -14.13739 -13.78530 -13.63923 -13.29370 -12.96505 -12.81164 -12.68098 -12.62710 -12.34341 -12.24664 -12.07416 -11.97210 -11.89083 -11.70657 -11.43793 -11.22375 -11.07606 -10.94549 -10.85644 -10.41203 -8.83601 -8.03973 -6.13472 1.40457 1.42450 1.54595 2.46199 3.22797 3.58991 3.77373 3.82143 4.04489 4.26975 4.34423 4.48329 4.65507 4.72440 4.76954 4.80935 4.83976 4.87034 4.91289 4.93741 5.01741 5.07162 5.08289 5.14307 5.20246 5.21605 5.26608 5.39241 5.47638 5.53148 5.58212 5.62650 5.70400 5.78672 5.91072 6.38970 6.80328 7.00101 7.04180 7.56184 9.00477 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.046752 B = 0.006704 C = 0.006549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.764553 B = 4175.453108 C = 4274.149760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.218 3.782 3 H 0.009 0.991 4 C -0.504 4.504 5 H 0.048 0.952 6 C 0.006 3.994 7 N -0.925 5.925 8 Si 0.954 3.046 9 H -0.271 1.271 10 H -0.281 1.281 11 H -0.283 1.283 12 N -0.681 5.681 13 C 0.118 3.882 14 C -0.127 4.127 15 C -0.171 4.171 16 C -0.073 4.073 17 C -0.128 4.128 18 C -0.119 4.119 19 C -0.120 4.120 20 C -0.118 4.118 21 H 0.056 0.944 22 H 0.027 0.973 23 H 0.030 0.970 24 H 0.258 0.742 25 H 0.326 0.674 26 H 0.026 0.974 27 H 0.074 0.926 28 H 0.045 0.955 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.031 0.969 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.103 -0.606 15.480 15.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.110 3.890 3 H 0.027 0.973 4 C -0.543 4.543 5 H 0.066 0.934 6 C -0.191 4.191 7 N -0.566 5.566 8 Si 0.780 3.220 9 H -0.196 1.196 10 H -0.207 1.207 11 H -0.209 1.209 12 N -0.311 5.311 13 C 0.027 3.973 14 C -0.184 4.184 15 C -0.229 4.229 16 C -0.092 4.092 17 C -0.166 4.166 18 C -0.157 4.157 19 C -0.157 4.157 20 C -0.156 4.156 21 H 0.074 0.926 22 H 0.046 0.954 23 H 0.049 0.951 24 H 0.067 0.933 25 H 0.144 0.856 26 H 0.045 0.955 27 H 0.093 0.907 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.092 0.908 31 H 0.050 0.950 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.647 -0.679 15.059 15.509 hybrid contribution -0.758 0.149 -1.087 1.334 sum 2.888 -0.530 13.972 14.277 Atomic orbital electron populations 1.22197 0.99839 0.99282 0.99507 1.18926 0.89911 0.92697 0.87494 0.97346 1.21602 1.29536 1.11806 0.91333 0.93379 1.25677 0.95806 0.95983 1.01680 1.70024 1.38596 1.24428 1.23579 0.85570 0.78034 0.78637 0.79738 1.19581 1.20736 1.20861 1.60792 1.37279 1.26155 1.06875 1.20887 0.93844 0.91001 0.91558 1.21783 0.97330 0.99719 0.99601 1.22640 0.99736 0.99757 1.00804 1.22048 0.96956 0.97834 0.92375 1.22554 0.97475 1.01042 0.95492 1.22095 0.97590 1.00165 0.95819 1.22111 0.97825 0.99081 0.96713 1.22494 1.00138 0.98712 0.94281 0.92551 0.95424 0.95139 0.93283 0.85642 0.95468 0.90716 0.93628 0.92494 0.90828 0.95032 0.91440 0.91434 0.92405 0.91725 0.91253 0.91479 0.90987 0.91501 0.91227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.29 8.66 71.98 0.62 -6.66 16 2 C 0.22 11.04 1.66 44.17 0.07 11.11 16 3 H 0.01 0.49 4.83 -2.39 -0.01 0.48 16 4 C -0.50 -28.68 8.84 25.60 0.23 -28.45 16 5 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 6 C 0.01 0.33 5.30 84.65 0.45 0.78 16 7 N -0.93 -54.44 11.37 21.45 0.24 -54.19 16 8 Si 0.95 45.29 29.54 68.60 2.03 47.32 16 9 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 10 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 11 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 12 N -0.68 -28.75 5.99 -452.11 -2.71 -31.46 16 13 C 0.12 4.09 0.53 3.53 0.00 4.10 16 14 C -0.13 -4.62 8.17 71.98 0.59 -4.03 16 15 C -0.17 -5.63 6.49 71.98 0.47 -5.16 16 16 C -0.07 -2.03 2.49 -9.49 -0.02 -2.05 16 17 C -0.13 -3.14 5.47 31.67 0.17 -2.97 16 18 C -0.12 -2.31 6.80 31.32 0.21 -2.10 16 19 C -0.12 -2.20 6.80 31.32 0.21 -1.99 16 20 C -0.12 -2.64 4.87 31.68 0.15 -2.49 16 21 H 0.06 3.08 6.20 -2.39 -0.01 3.06 16 22 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 23 H 0.03 1.29 6.84 -2.39 -0.02 1.27 16 24 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 25 H 0.33 12.97 7.35 -89.69 -0.66 12.31 16 26 H 0.03 1.14 6.64 -2.39 -0.02 1.12 16 27 H 0.07 2.19 6.69 -2.39 -0.02 2.18 16 28 H 0.04 1.75 8.14 -2.38 -0.02 1.73 16 29 H 0.06 1.80 5.84 -2.39 -0.01 1.79 16 30 H 0.07 2.03 6.12 -2.39 -0.01 2.01 16 31 H 0.03 1.21 6.60 -2.38 -0.02 1.20 16 32 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.07 1.69 5.57 -2.39 -0.01 1.68 16 34 H 0.06 1.48 7.98 -2.39 -0.02 1.46 16 35 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 38 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.07 1.44 7.84 -2.39 -0.02 1.42 16 40 H 0.07 1.54 6.05 -2.39 -0.01 1.52 16 Total: -1.00 -60.47 291.96 3.07 -57.40 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 0.35 Total: 20.85 kcal Atomic # 6 Polarization: -43.07 SS G_CDS: 3.16 Total: -39.91 kcal Atomic # 7 Polarization: -83.19 SS G_CDS: -2.46 Total: -85.65 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -60.47 3.07 -57.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308668236.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.648 kcal (2) G-P(sol) polarization free energy of solvation -60.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds