Wall clock time and date at job start Mon Mar 30 2020 02:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53005 * 109.46992 * 2 1 4 4 C 1.52994 * 109.47199 * 119.99991 * 2 1 3 5 5 H 1.08995 * 109.47237 * 300.00261 * 4 2 1 6 6 C 1.53005 * 109.47141 * 60.00100 * 4 2 1 7 7 N 1.46503 * 109.47157 * 180.02562 * 4 2 1 8 8 C 1.36934 * 120.00243 * 121.94508 * 7 4 2 9 9 H 1.07999 * 120.00028 * 208.76448 * 8 7 4 10 10 C 1.38809 * 119.99818 * 28.76477 * 8 7 4 11 11 N 1.31611 * 120.00624 * 17.62359 * 10 8 7 12 12 Si 1.86806 * 119.99655 * 197.62479 * 10 8 7 13 13 H 1.48499 * 109.47080 * 59.99960 * 12 10 8 14 14 H 1.48507 * 109.46963 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47070 * 300.00046 * 12 10 8 16 16 C 1.46509 * 119.99641 * 301.94317 * 7 4 2 17 17 C 1.54267 * 110.02779 * 237.16908 * 16 7 4 18 18 C 1.54896 * 104.19256 * 217.10391 * 17 16 7 19 19 C 1.54892 * 102.74578 * 37.94218 * 18 17 16 20 20 C 1.53871 * 110.03175 * 120.00174 * 16 7 4 21 21 H 1.08996 * 109.46763 * 299.99517 * 1 2 3 22 22 H 1.09000 * 109.47136 * 59.99887 * 1 2 3 23 23 H 1.09000 * 109.46575 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47239 * 240.00251 * 2 1 3 25 25 H 1.08995 * 109.47229 * 180.02562 * 3 2 1 26 26 H 1.08997 * 109.47487 * 300.00511 * 3 2 1 27 27 H 1.09005 * 109.46898 * 60.00017 * 3 2 1 28 28 H 1.08997 * 109.47487 * 179.97438 * 6 4 2 29 29 H 1.08995 * 109.47229 * 300.00020 * 6 4 2 30 30 H 1.09005 * 109.46898 * 60.00010 * 6 4 2 31 31 H 0.96995 * 120.00576 * 180.02562 * 11 10 8 32 32 H 1.08999 * 110.01631 * 358.60318 * 16 7 4 33 33 H 1.09001 * 110.48943 * 335.77799 * 17 16 7 34 34 H 1.08997 * 110.48985 * 98.42994 * 17 16 7 35 35 H 1.08989 * 110.75786 * 279.62937 * 18 17 16 36 36 H 1.09000 * 110.91653 * 156.32754 * 18 17 16 37 37 H 1.08998 * 110.49074 * 203.37659 * 19 18 17 38 38 H 1.09006 * 110.48403 * 80.73504 * 19 18 17 39 39 H 1.08996 * 110.03112 * 238.57000 * 20 16 7 40 40 H 1.09006 * 110.03082 * 359.97438 * 20 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6767 -0.2074 2.1391 6 6 1.5301 -2.1638 1.2492 7 7 3.5051 -0.7207 1.2495 8 6 4.1894 -0.1628 2.2962 9 1 5.1693 0.2618 2.1357 10 6 3.6236 -0.1433 3.5636 11 7 2.6168 -0.9420 3.8473 12 14 4.2912 1.0170 4.8666 13 1 4.1618 2.4189 4.3942 14 1 3.5206 0.8448 6.1244 15 1 5.7221 0.7091 5.1172 16 6 4.2380 -1.3170 0.1298 17 6 5.1830 -2.4220 0.6456 18 6 6.4449 -2.2875 -0.2426 19 6 6.5817 -0.7540 -0.4121 20 6 5.1273 -0.2565 -0.5426 21 1 -0.3633 0.5137 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 3.1300 1.4426 -0.0005 26 1 1.6767 1.9564 -0.8899 27 1 1.6767 1.9564 0.8900 28 1 1.8938 -2.6778 2.1389 29 1 0.4401 -2.1638 1.2492 30 1 1.8935 -2.6776 0.3591 31 1 2.2211 -0.9281 4.7328 32 1 3.5381 -1.7320 -0.5955 33 1 5.4336 -2.2516 1.6926 34 1 4.7283 -3.4040 0.5160 35 1 6.2915 -2.7706 -1.2074 36 1 7.3199 -2.7002 0.2596 37 1 7.1476 -0.5187 -1.3134 38 1 7.0581 -0.3143 0.4642 39 1 4.8596 -0.1573 -1.5945 40 1 5.0132 0.7020 -0.0361 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000319620411.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:51 Heat of formation + Delta-G solvation = -4.781952 kcal Electronic energy + Delta-G solvation = -17326.233357 eV Core-core repulsion = 14947.601362 eV Total energy + Delta-G solvation = -2378.631995 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.16527 -35.86949 -33.03081 -30.65448 -28.84618 -27.75272 -26.54365 -26.11131 -23.52563 -21.56153 -19.87009 -19.51001 -18.27064 -16.32516 -15.36200 -14.61592 -14.07673 -13.94825 -13.46013 -13.09633 -12.91357 -12.52183 -12.18613 -11.71427 -11.49685 -11.33805 -10.91113 -10.82049 -10.76300 -10.59609 -10.43028 -10.33885 -10.20714 -10.16709 -10.01456 -9.87398 -9.80699 -9.50544 -9.40408 -9.00911 -8.28132 -6.48955 -5.69445 -3.11603 3.42029 3.48068 3.49926 4.56112 5.36588 5.37049 5.49370 5.54370 5.70335 5.76925 5.87136 6.10199 6.16921 6.29395 6.30361 6.35930 6.47212 6.50703 6.53401 6.57960 6.61310 6.62805 6.66607 6.73738 6.87478 6.89090 6.98164 7.00952 7.07167 7.14109 7.18196 7.35464 7.41839 7.78661 7.86341 7.96928 8.60943 9.35496 10.00278 10.53326 11.36912 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.016942 B = 0.014992 C = 0.010228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.265445 B = 1867.175267 C = 2736.838336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.114 4.114 3 C -0.130 4.130 4 C 0.191 3.809 5 H 0.101 0.899 6 C -0.145 4.145 7 N -0.575 5.575 8 C -0.238 4.238 9 H 0.063 0.937 10 C 0.004 3.996 11 N -0.897 5.897 12 Si 0.892 3.108 13 H -0.286 1.286 14 H -0.293 1.293 15 H -0.285 1.285 16 C 0.173 3.827 17 C -0.131 4.131 18 C -0.124 4.124 19 C -0.118 4.118 20 C -0.136 4.136 21 H 0.049 0.951 22 H 0.037 0.963 23 H 0.050 0.950 24 H 0.049 0.951 25 H 0.066 0.934 26 H 0.026 0.974 27 H 0.044 0.956 28 H 0.069 0.931 29 H 0.029 0.971 30 H 0.020 0.980 31 H 0.251 0.749 32 H 0.049 0.951 33 H 0.082 0.918 34 H 0.043 0.957 35 H 0.052 0.948 36 H 0.051 0.949 37 H 0.046 0.954 38 H 0.060 0.940 39 H 0.042 0.958 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.707 0.057 -7.517 7.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.134 4.134 3 C -0.188 4.188 4 C 0.084 3.916 5 H 0.119 0.881 6 C -0.204 4.204 7 N -0.293 5.293 8 C -0.368 4.368 9 H 0.081 0.919 10 C -0.194 4.194 11 N -0.541 5.541 12 Si 0.723 3.277 13 H -0.213 1.213 14 H -0.219 1.219 15 H -0.212 1.212 16 C 0.065 3.935 17 C -0.171 4.171 18 C -0.162 4.162 19 C -0.156 4.156 20 C -0.175 4.175 21 H 0.068 0.932 22 H 0.056 0.944 23 H 0.069 0.931 24 H 0.067 0.933 25 H 0.085 0.915 26 H 0.045 0.955 27 H 0.063 0.937 28 H 0.088 0.912 29 H 0.048 0.952 30 H 0.039 0.961 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.601 0.045 -7.331 7.356 hybrid contribution 0.323 0.519 0.732 0.954 sum 0.925 0.564 -6.600 6.688 Atomic orbital electron populations 1.21840 0.96931 1.00862 1.00262 1.21731 0.93944 0.96921 1.00787 1.21666 1.02297 0.95812 0.98986 1.20355 0.82959 0.93042 0.95244 0.88096 1.22170 0.97879 0.99851 1.00464 1.44066 1.00426 1.65613 1.19239 1.18951 1.01801 1.29703 0.86376 0.91924 1.24957 0.99211 0.98595 0.96681 1.69999 1.26758 1.37007 1.20352 0.86526 0.78286 0.81511 0.81382 1.21256 1.21886 1.21151 1.20883 0.91853 0.90690 0.90103 1.22812 0.94864 0.98387 1.00998 1.22436 0.98537 0.96100 0.99144 1.22259 0.97425 0.95874 1.00018 1.22683 0.94629 1.01358 0.98839 0.93185 0.94371 0.93058 0.93268 0.91545 0.95470 0.93657 0.91217 0.95172 0.96130 0.93876 0.93265 0.89959 0.93775 0.92935 0.92996 0.93518 0.92106 0.93954 0.90897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 8.84 37.16 0.33 -2.06 16 2 C -0.11 -2.18 2.33 -90.62 -0.21 -2.39 16 3 C -0.13 -2.47 9.04 37.16 0.34 -2.13 16 4 C 0.19 4.28 1.30 -67.93 -0.09 4.19 16 5 H 0.10 2.63 5.78 -51.93 -0.30 2.33 16 6 C -0.14 -3.15 8.70 37.16 0.32 -2.82 16 7 N -0.57 -13.28 1.55 -156.88 -0.24 -13.52 16 8 C -0.24 -6.12 7.68 -15.06 -0.12 -6.23 16 9 H 0.06 1.63 7.33 -52.49 -0.38 1.24 16 10 C 0.00 0.10 4.88 -17.44 -0.09 0.02 16 11 N -0.90 -24.74 10.32 55.49 0.57 -24.17 16 12 Si 0.89 21.42 29.59 -169.99 -5.03 16.39 16 13 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 14 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 16 C 0.17 3.51 2.50 -66.81 -0.17 3.35 16 17 C -0.13 -2.60 6.41 -25.07 -0.16 -2.76 16 18 C -0.12 -2.05 6.91 -24.73 -0.17 -2.22 16 19 C -0.12 -1.97 6.83 -25.07 -0.17 -2.14 16 20 C -0.14 -2.49 5.67 -25.62 -0.15 -2.64 16 21 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 22 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 23 H 0.05 0.84 6.43 -51.93 -0.33 0.50 16 24 H 0.05 0.94 6.98 -51.93 -0.36 0.58 16 25 H 0.07 1.34 5.85 -51.93 -0.30 1.04 16 26 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.07 1.72 7.42 -51.93 -0.39 1.34 16 29 H 0.03 0.59 6.43 -51.93 -0.33 0.26 16 30 H 0.02 0.41 7.14 -51.93 -0.37 0.04 16 31 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 32 H 0.05 0.99 6.12 -51.93 -0.32 0.68 16 33 H 0.08 1.89 7.00 -51.93 -0.36 1.52 16 34 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.05 0.79 8.14 -51.94 -0.42 0.37 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 1.47 5.95 -51.93 -0.31 1.16 16 LS Contribution 296.03 15.07 4.46 4.46 Total: -1.00 -26.00 296.03 -7.70 -33.70 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -7.13 Total: 0.99 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: -0.33 Total: -17.84 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.33 Total: -37.70 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -26.00 -7.70 -33.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000319620411.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.915 kcal (2) G-P(sol) polarization free energy of solvation -26.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds