Wall clock time and date at job start Mon Mar 30 2020 02:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53005 * 109.46992 * 2 1 4 4 C 1.52994 * 109.47199 * 119.99991 * 2 1 3 5 5 H 1.08995 * 109.47237 * 300.00261 * 4 2 1 6 6 C 1.53005 * 109.47141 * 60.00100 * 4 2 1 7 7 N 1.46503 * 109.47157 * 180.02562 * 4 2 1 8 8 C 1.36934 * 120.00243 * 121.94508 * 7 4 2 9 9 H 1.07999 * 120.00028 * 208.76448 * 8 7 4 10 10 C 1.38809 * 119.99818 * 28.76477 * 8 7 4 11 11 N 1.31611 * 120.00624 * 17.62359 * 10 8 7 12 12 Si 1.86806 * 119.99655 * 197.62479 * 10 8 7 13 13 H 1.48499 * 109.47080 * 59.99960 * 12 10 8 14 14 H 1.48507 * 109.46963 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47070 * 300.00046 * 12 10 8 16 16 C 1.46509 * 119.99641 * 301.94317 * 7 4 2 17 17 C 1.54267 * 110.02779 * 237.16908 * 16 7 4 18 18 C 1.54896 * 104.19256 * 217.10391 * 17 16 7 19 19 C 1.54892 * 102.74578 * 37.94218 * 18 17 16 20 20 C 1.53871 * 110.03175 * 120.00174 * 16 7 4 21 21 H 1.08996 * 109.46763 * 299.99517 * 1 2 3 22 22 H 1.09000 * 109.47136 * 59.99887 * 1 2 3 23 23 H 1.09000 * 109.46575 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47239 * 240.00251 * 2 1 3 25 25 H 1.08995 * 109.47229 * 180.02562 * 3 2 1 26 26 H 1.08997 * 109.47487 * 300.00511 * 3 2 1 27 27 H 1.09005 * 109.46898 * 60.00017 * 3 2 1 28 28 H 1.08997 * 109.47487 * 179.97438 * 6 4 2 29 29 H 1.08995 * 109.47229 * 300.00020 * 6 4 2 30 30 H 1.09005 * 109.46898 * 60.00010 * 6 4 2 31 31 H 0.96995 * 120.00576 * 180.02562 * 11 10 8 32 32 H 1.08999 * 110.01631 * 358.60318 * 16 7 4 33 33 H 1.09001 * 110.48943 * 335.77799 * 17 16 7 34 34 H 1.08997 * 110.48985 * 98.42994 * 17 16 7 35 35 H 1.08989 * 110.75786 * 279.62937 * 18 17 16 36 36 H 1.09000 * 110.91653 * 156.32754 * 18 17 16 37 37 H 1.08998 * 110.49074 * 203.37659 * 19 18 17 38 38 H 1.09006 * 110.48403 * 80.73504 * 19 18 17 39 39 H 1.08996 * 110.03112 * 238.57000 * 20 16 7 40 40 H 1.09006 * 110.03082 * 359.97438 * 20 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6767 -0.2074 2.1391 6 6 1.5301 -2.1638 1.2492 7 7 3.5051 -0.7207 1.2495 8 6 4.1894 -0.1628 2.2962 9 1 5.1693 0.2618 2.1357 10 6 3.6236 -0.1433 3.5636 11 7 2.6168 -0.9420 3.8473 12 14 4.2912 1.0170 4.8666 13 1 4.1618 2.4189 4.3942 14 1 3.5206 0.8448 6.1244 15 1 5.7221 0.7091 5.1172 16 6 4.2380 -1.3170 0.1298 17 6 5.1830 -2.4220 0.6456 18 6 6.4449 -2.2875 -0.2426 19 6 6.5817 -0.7540 -0.4121 20 6 5.1273 -0.2565 -0.5426 21 1 -0.3633 0.5137 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 -1.0277 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 3.1300 1.4426 -0.0005 26 1 1.6767 1.9564 -0.8899 27 1 1.6767 1.9564 0.8900 28 1 1.8938 -2.6778 2.1389 29 1 0.4401 -2.1638 1.2492 30 1 1.8935 -2.6776 0.3591 31 1 2.2211 -0.9281 4.7328 32 1 3.5381 -1.7320 -0.5955 33 1 5.4336 -2.2516 1.6926 34 1 4.7283 -3.4040 0.5160 35 1 6.2915 -2.7706 -1.2074 36 1 7.3199 -2.7002 0.2596 37 1 7.1476 -0.5187 -1.3134 38 1 7.0581 -0.3143 0.4642 39 1 4.8596 -0.1573 -1.5945 40 1 5.0132 0.7020 -0.0361 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000319620411.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:51 Heat of formation + Delta-G solvation = -16.251644 kcal Electronic energy + Delta-G solvation = -17326.730720 eV Core-core repulsion = 14947.601362 eV Total energy + Delta-G solvation = -2379.129358 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.81135 -37.41694 -34.82723 -32.47582 -30.54555 -29.25440 -28.17230 -27.64927 -25.38206 -23.25358 -21.31525 -21.10009 -20.01735 -18.10373 -17.06052 -16.36484 -15.86387 -15.50513 -14.99550 -14.71627 -14.62337 -14.00973 -13.77046 -13.50131 -13.04266 -12.93343 -12.73820 -12.67892 -12.45575 -12.22128 -12.14171 -11.90898 -11.81035 -11.70109 -11.57680 -11.46676 -11.29710 -11.16534 -11.13231 -10.75042 -10.24777 -8.38894 -7.70861 -5.12936 1.47135 1.49742 1.54268 2.58932 3.40445 3.70243 4.03126 4.06281 4.19468 4.32628 4.40484 4.58847 4.73517 4.80261 4.87395 4.94491 4.97219 4.97849 4.98462 5.02784 5.07954 5.12652 5.23531 5.26301 5.28138 5.31246 5.36882 5.43466 5.51332 5.57950 5.64712 5.73247 5.79068 5.84924 5.98760 6.13081 6.61162 7.36210 8.12716 8.57649 9.32314 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.016942 B = 0.014992 C = 0.010228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.265445 B = 1867.175267 C = 2736.838336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.107 4.107 3 C -0.124 4.124 4 C 0.189 3.811 5 H 0.063 0.937 6 C -0.132 4.132 7 N -0.584 5.584 8 C -0.227 4.227 9 H 0.056 0.944 10 C -0.045 4.045 11 N -0.920 5.920 12 Si 0.942 3.058 13 H -0.285 1.285 14 H -0.300 1.300 15 H -0.284 1.284 16 C 0.167 3.833 17 C -0.131 4.131 18 C -0.113 4.113 19 C -0.115 4.115 20 C -0.129 4.129 21 H 0.040 0.960 22 H 0.064 0.936 23 H 0.056 0.944 24 H 0.057 0.943 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.027 0.973 28 H 0.032 0.968 29 H 0.045 0.955 30 H 0.032 0.968 31 H 0.242 0.758 32 H 0.055 0.945 33 H 0.042 0.958 34 H 0.043 0.957 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.045 0.955 39 H 0.064 0.936 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.098 0.234 -9.874 9.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.127 4.127 3 C -0.182 4.182 4 C 0.083 3.917 5 H 0.081 0.919 6 C -0.191 4.191 7 N -0.303 5.303 8 C -0.358 4.358 9 H 0.074 0.926 10 C -0.240 4.240 11 N -0.567 5.567 12 Si 0.772 3.228 13 H -0.212 1.212 14 H -0.226 1.226 15 H -0.210 1.210 16 C 0.060 3.940 17 C -0.171 4.171 18 C -0.151 4.151 19 C -0.152 4.152 20 C -0.168 4.168 21 H 0.059 0.941 22 H 0.083 0.917 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.046 0.954 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.095 0.905 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.064 0.936 39 H 0.083 0.917 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.008 0.226 -9.712 9.767 hybrid contribution 0.214 0.442 1.411 1.494 sum 1.222 0.667 -8.301 8.417 Atomic orbital electron populations 1.21786 0.94963 1.01524 1.01114 1.21599 0.95556 0.96544 0.98958 1.21593 1.01217 0.95817 0.99525 1.20286 0.82721 0.93290 0.95444 0.91914 1.22002 0.98770 0.99198 0.99108 1.44197 1.00897 1.65926 1.19295 1.19048 1.01320 1.28455 0.86991 0.92640 1.25469 1.00130 1.00166 0.98270 1.70145 1.28057 1.38464 1.20008 0.85733 0.77569 0.80088 0.79387 1.21175 1.22641 1.21000 1.21080 0.92183 0.91436 0.89296 1.22722 0.96762 0.98187 0.99391 1.22390 0.96956 0.96229 0.99529 1.22244 0.96442 0.95733 1.00823 1.22569 0.95379 0.99389 0.99488 0.94129 0.91711 0.92530 0.92426 0.93139 0.92580 0.95365 0.94893 0.93592 0.94913 0.94824 0.92645 0.93873 0.93774 0.90463 0.91958 0.90471 0.93640 0.91738 0.93110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.29 8.84 71.98 0.64 -3.65 16 2 C -0.11 -3.91 2.33 -10.79 -0.03 -3.93 16 3 C -0.12 -4.52 9.04 71.98 0.65 -3.87 16 4 C 0.19 8.52 1.30 44.99 0.06 8.58 16 5 H 0.06 3.36 5.78 -2.39 -0.01 3.34 16 6 C -0.13 -5.72 8.70 71.98 0.63 -5.09 16 7 N -0.58 -27.15 1.55 -650.26 -1.01 -28.16 16 8 C -0.23 -11.90 7.68 84.03 0.65 -11.25 16 9 H 0.06 2.94 7.33 -2.91 -0.02 2.92 16 10 C -0.04 -2.46 4.88 84.86 0.41 -2.04 16 11 N -0.92 -52.65 10.32 21.65 0.22 -52.43 16 12 Si 0.94 45.19 29.59 68.60 2.03 47.22 16 13 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 14 H -0.30 -14.63 7.11 99.48 0.71 -13.92 16 15 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 16 C 0.17 6.60 2.50 45.71 0.11 6.72 16 17 C -0.13 -5.10 6.41 31.67 0.20 -4.90 16 18 C -0.11 -3.42 6.91 31.89 0.22 -3.20 16 19 C -0.11 -3.53 6.83 31.67 0.22 -3.31 16 20 C -0.13 -4.47 5.67 31.32 0.18 -4.30 16 21 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 22 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 23 H 0.06 1.71 6.43 -2.39 -0.02 1.69 16 24 H 0.06 2.03 6.98 -2.39 -0.02 2.02 16 25 H 0.05 1.98 5.85 -2.39 -0.01 1.97 16 26 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 28 H 0.03 1.64 7.42 -2.39 -0.02 1.63 16 29 H 0.05 1.79 6.43 -2.39 -0.02 1.78 16 30 H 0.03 1.29 7.14 -2.38 -0.02 1.28 16 31 H 0.24 13.80 8.31 -92.71 -0.77 13.03 16 32 H 0.06 2.11 6.12 -2.39 -0.01 2.10 16 33 H 0.04 2.01 7.00 -2.39 -0.02 1.99 16 34 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 39 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.05 2.00 5.95 -2.38 -0.01 1.98 16 Total: -1.00 -56.98 296.03 6.16 -50.82 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 0.98 Total: 12.81 kcal Atomic # 6 Polarization: -34.19 SS G_CDS: 3.94 Total: -30.26 kcal Atomic # 7 Polarization: -79.81 SS G_CDS: -0.79 Total: -80.59 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -56.98 6.16 -50.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000319620411.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.565 kcal (2) G-P(sol) polarization free energy of solvation -56.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds