Wall clock time and date at job start Mon Mar 30 2020 02:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47030 * 2 1 4 4 C 1.53003 * 109.46930 * 240.00085 * 2 1 3 5 5 H 1.08993 * 109.47073 * 60.00128 * 4 2 1 6 6 C 1.53000 * 109.47195 * 299.99814 * 4 2 1 7 7 N 1.46504 * 109.46676 * 179.97438 * 4 2 1 8 8 C 1.36936 * 119.99979 * 242.18094 * 7 4 2 9 9 H 1.08002 * 119.99754 * 149.24086 * 8 7 4 10 10 C 1.38812 * 120.00093 * 329.25079 * 8 7 4 11 11 N 1.31617 * 119.99929 * 145.14511 * 10 8 7 12 12 Si 1.86797 * 119.99919 * 325.14235 * 10 8 7 13 13 H 1.48494 * 109.47206 * 86.70437 * 12 10 8 14 14 H 1.48501 * 109.47067 * 206.70653 * 12 10 8 15 15 H 1.48505 * 109.47169 * 326.69992 * 12 10 8 16 16 C 1.46499 * 120.00162 * 62.18979 * 7 4 2 17 17 C 1.54256 * 110.03178 * 239.77638 * 16 7 4 18 18 C 1.54897 * 104.19772 * 217.10177 * 17 16 7 19 19 C 1.54894 * 102.74297 * 37.94229 * 18 17 16 20 20 C 1.53872 * 110.03439 * 122.60766 * 16 7 4 21 21 H 1.09007 * 109.47189 * 59.99970 * 1 2 3 22 22 H 1.09001 * 109.47019 * 300.00032 * 1 2 3 23 23 H 1.08996 * 109.46903 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46905 * 119.99865 * 2 1 3 25 25 H 1.09001 * 109.47246 * 60.00107 * 3 2 1 26 26 H 1.09005 * 109.46921 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.47166 * 299.99705 * 3 2 1 28 28 H 1.08997 * 109.46987 * 178.29588 * 6 4 2 29 29 H 1.09006 * 109.46709 * 298.29400 * 6 4 2 30 30 H 1.08996 * 109.46874 * 58.28938 * 6 4 2 31 31 H 0.97006 * 119.99990 * 179.97438 * 11 10 8 32 32 H 1.09001 * 110.01544 * 1.21691 * 16 7 4 33 33 H 1.08997 * 110.49078 * 335.77954 * 17 16 7 34 34 H 1.09003 * 110.49119 * 98.42908 * 17 16 7 35 35 H 1.08994 * 110.75908 * 279.63079 * 18 17 16 36 36 H 1.08995 * 110.91480 * 156.32684 * 18 17 16 37 37 H 1.09001 * 110.48553 * 203.37600 * 19 18 17 38 38 H 1.09001 * 110.59624 * 80.79202 * 19 18 17 39 39 H 1.09001 * 110.03511 * 238.57480 * 20 16 7 40 40 H 1.09005 * 110.03357 * 359.94916 * 20 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 1 1.6766 -0.2074 -2.1392 6 6 1.5300 -2.1638 -1.2493 7 7 3.5050 -0.7207 -1.2495 8 6 4.1892 -0.0889 -2.2535 9 1 5.1552 0.3513 -2.0546 10 6 3.6413 -0.0143 -3.5267 11 7 3.8458 1.0528 -4.2696 12 14 2.6138 -1.4283 -4.1857 13 1 1.2015 -1.2536 -3.7615 14 1 2.6869 -1.4441 -5.6688 15 1 3.1364 -2.7113 -3.6507 16 6 4.2380 -1.3961 -0.1759 17 6 5.1337 -0.3854 0.5695 18 6 6.4163 -1.1875 0.9021 19 6 6.6098 -2.0619 -0.3617 20 6 5.1765 -2.4621 -0.7680 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5138 0.8900 25 1 1.6766 1.9564 0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.8681 -2.6686 -2.1542 29 1 1.9182 -2.6863 -0.3750 30 1 0.4404 -2.1639 -1.2186 31 1 3.4632 1.1048 -5.1595 32 1 3.5381 -1.8596 0.5194 33 1 5.3699 0.4621 -0.0740 34 1 4.6475 -0.0470 1.4845 35 1 6.2646 -1.8106 1.7834 36 1 7.2665 -0.5204 1.0441 37 1 7.2009 -2.9470 -0.1264 38 1 7.0852 -1.4871 -1.1566 39 1 4.9326 -3.4428 -0.3594 40 1 5.0860 -2.4775 -1.8541 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000319620414.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:53 Heat of formation + Delta-G solvation = 2.423524 kcal Electronic energy + Delta-G solvation = -17394.544049 eV Core-core repulsion = 15016.224507 eV Total energy + Delta-G solvation = -2378.319542 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.42847 -36.11437 -33.07099 -31.21407 -29.22473 -27.87359 -26.91380 -26.22984 -23.61434 -21.77122 -20.01965 -19.62029 -18.51283 -16.54813 -15.32525 -15.18544 -14.28551 -13.94756 -13.71275 -13.26214 -13.04621 -12.79040 -12.55579 -11.98441 -11.82394 -11.58743 -11.32744 -11.04978 -10.76881 -10.65404 -10.44506 -10.40448 -10.34686 -10.21112 -10.11185 -9.98571 -9.81523 -9.80430 -9.33603 -9.25405 -8.31417 -6.78430 -5.98265 -3.18544 3.41212 3.55757 3.58895 4.61914 4.92172 5.28094 5.39090 5.40954 5.54527 5.62363 5.66571 5.88151 6.00819 6.09657 6.15502 6.19152 6.23695 6.26896 6.28385 6.40359 6.43529 6.48653 6.51067 6.55714 6.59399 6.60785 6.73585 6.78844 6.82826 6.95730 7.05256 7.14196 7.20429 7.23865 7.29792 8.10528 8.44346 9.11080 9.84146 10.25374 11.17289 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.019202 B = 0.014963 C = 0.011223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.832731 B = 1870.834881 C = 2494.240642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 C -0.130 4.130 4 C 0.166 3.834 5 H 0.079 0.921 6 C -0.177 4.177 7 N -0.587 5.587 8 C -0.255 4.255 9 H 0.081 0.919 10 C 0.039 3.961 11 N -0.885 5.885 12 Si 0.848 3.152 13 H -0.283 1.283 14 H -0.308 1.308 15 H -0.274 1.274 16 C 0.173 3.827 17 C -0.133 4.133 18 C -0.123 4.123 19 C -0.117 4.117 20 C -0.135 4.135 21 H 0.050 0.950 22 H 0.044 0.956 23 H 0.050 0.950 24 H 0.056 0.944 25 H 0.029 0.971 26 H 0.070 0.930 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.261 0.739 32 H 0.052 0.948 33 H 0.079 0.921 34 H 0.047 0.953 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.047 0.953 38 H 0.064 0.936 39 H 0.041 0.959 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.697 -4.256 9.184 10.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.125 4.125 3 C -0.187 4.187 4 C 0.059 3.941 5 H 0.097 0.903 6 C -0.235 4.235 7 N -0.307 5.307 8 C -0.383 4.383 9 H 0.099 0.901 10 C -0.161 4.161 11 N -0.526 5.526 12 Si 0.677 3.323 13 H -0.210 1.210 14 H -0.236 1.236 15 H -0.200 1.200 16 C 0.065 3.935 17 C -0.172 4.172 18 C -0.161 4.161 19 C -0.155 4.155 20 C -0.174 4.174 21 H 0.070 0.930 22 H 0.063 0.937 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.048 0.952 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.060 0.940 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.705 -4.145 9.004 10.058 hybrid contribution -0.619 -0.959 -0.605 1.292 sum -2.324 -5.105 8.399 10.100 Atomic orbital electron populations 1.21904 0.96763 1.00876 1.00879 1.21584 0.93923 0.97476 0.99508 1.21628 1.02743 0.94952 0.99391 1.20705 0.84096 0.92665 0.96631 0.90295 1.22590 0.99824 0.99686 1.01420 1.44376 0.99634 1.61232 1.25442 1.18600 1.04840 1.27752 0.87113 0.90132 1.25295 0.97515 0.96852 0.96465 1.70073 1.45977 1.25158 1.11353 0.87515 0.80717 0.87068 0.77000 1.21009 1.23594 1.19991 1.20943 0.91962 0.90782 0.89771 1.22824 0.95203 0.99924 0.99289 1.22427 0.98158 0.98243 0.97271 1.22241 0.97383 0.98381 0.97481 1.22596 0.94574 0.97540 1.02709 0.93050 0.93683 0.93119 0.92510 0.95165 0.91110 0.93229 0.93005 0.93251 0.93258 0.92972 0.92975 0.90195 0.93415 0.92797 0.92774 0.93431 0.91718 0.94021 0.90376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 8.84 37.16 0.33 -1.96 16 2 C -0.10 -1.89 2.39 -90.62 -0.22 -2.10 16 3 C -0.13 -2.43 9.04 37.16 0.34 -2.09 16 4 C 0.17 3.50 1.14 -67.93 -0.08 3.42 16 5 H 0.08 1.91 5.03 -51.93 -0.26 1.65 16 6 C -0.18 -3.42 8.09 37.16 0.30 -3.12 16 7 N -0.59 -13.06 1.24 -156.89 -0.19 -13.26 16 8 C -0.26 -6.69 8.23 -15.06 -0.12 -6.81 16 9 H 0.08 2.29 6.98 -52.49 -0.37 1.92 16 10 C 0.04 1.09 4.83 -17.43 -0.08 1.01 16 11 N -0.89 -26.32 13.97 55.49 0.78 -25.54 16 12 Si 0.85 21.68 23.50 -169.99 -4.00 17.68 16 13 H -0.28 -7.02 6.28 56.52 0.35 -6.66 16 14 H -0.31 -8.16 7.11 56.52 0.40 -7.76 16 15 H -0.27 -6.96 6.61 56.52 0.37 -6.59 16 16 C 0.17 3.33 2.49 -66.82 -0.17 3.16 16 17 C -0.13 -2.38 5.84 -25.07 -0.15 -2.53 16 18 C -0.12 -1.91 6.91 -24.73 -0.17 -2.09 16 19 C -0.12 -1.96 6.83 -25.07 -0.17 -2.13 16 20 C -0.13 -2.55 6.26 -25.62 -0.16 -2.71 16 21 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 22 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.05 0.74 6.39 -51.93 -0.33 0.41 16 24 H 0.06 0.99 7.22 -51.93 -0.37 0.61 16 25 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 1.45 7.03 -51.93 -0.37 1.09 16 27 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.05 1.10 4.69 -51.93 -0.24 0.86 16 29 H 0.05 0.87 6.86 -51.93 -0.36 0.52 16 30 H 0.05 0.85 6.34 -51.93 -0.33 0.52 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.05 0.96 6.11 -51.93 -0.32 0.64 16 33 H 0.08 1.64 6.50 -51.93 -0.34 1.31 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 39 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.08 1.72 7.27 -51.93 -0.38 1.35 16 LS Contribution 289.75 15.07 4.37 4.37 Total: -1.00 -27.62 289.75 -6.50 -34.12 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -7.10 Total: 0.58 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: -0.35 Total: -17.94 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.58 Total: -38.80 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.00 Total: 17.68 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -27.62 -6.50 -34.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000319620414.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.539 kcal (2) G-P(sol) polarization free energy of solvation -27.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds