Wall clock time and date at job start Mon Mar 30 2020 02:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47030 * 2 1 4 4 C 1.53003 * 109.46930 * 240.00085 * 2 1 3 5 5 H 1.08993 * 109.47073 * 60.00128 * 4 2 1 6 6 C 1.53000 * 109.47195 * 299.99814 * 4 2 1 7 7 N 1.46504 * 109.46676 * 179.97438 * 4 2 1 8 8 C 1.36936 * 119.99979 * 242.18094 * 7 4 2 9 9 H 1.08002 * 119.99754 * 149.24086 * 8 7 4 10 10 C 1.38812 * 120.00093 * 329.25079 * 8 7 4 11 11 N 1.31617 * 119.99929 * 145.14511 * 10 8 7 12 12 Si 1.86797 * 119.99919 * 325.14235 * 10 8 7 13 13 H 1.48494 * 109.47206 * 86.70437 * 12 10 8 14 14 H 1.48501 * 109.47067 * 206.70653 * 12 10 8 15 15 H 1.48505 * 109.47169 * 326.69992 * 12 10 8 16 16 C 1.46499 * 120.00162 * 62.18979 * 7 4 2 17 17 C 1.54256 * 110.03178 * 239.77638 * 16 7 4 18 18 C 1.54897 * 104.19772 * 217.10177 * 17 16 7 19 19 C 1.54894 * 102.74297 * 37.94229 * 18 17 16 20 20 C 1.53872 * 110.03439 * 122.60766 * 16 7 4 21 21 H 1.09007 * 109.47189 * 59.99970 * 1 2 3 22 22 H 1.09001 * 109.47019 * 300.00032 * 1 2 3 23 23 H 1.08996 * 109.46903 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46905 * 119.99865 * 2 1 3 25 25 H 1.09001 * 109.47246 * 60.00107 * 3 2 1 26 26 H 1.09005 * 109.46921 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.47166 * 299.99705 * 3 2 1 28 28 H 1.08997 * 109.46987 * 178.29588 * 6 4 2 29 29 H 1.09006 * 109.46709 * 298.29400 * 6 4 2 30 30 H 1.08996 * 109.46874 * 58.28938 * 6 4 2 31 31 H 0.97006 * 119.99990 * 179.97438 * 11 10 8 32 32 H 1.09001 * 110.01544 * 1.21691 * 16 7 4 33 33 H 1.08997 * 110.49078 * 335.77954 * 17 16 7 34 34 H 1.09003 * 110.49119 * 98.42908 * 17 16 7 35 35 H 1.08994 * 110.75908 * 279.63079 * 18 17 16 36 36 H 1.08995 * 110.91480 * 156.32684 * 18 17 16 37 37 H 1.09001 * 110.48553 * 203.37600 * 19 18 17 38 38 H 1.09001 * 110.59624 * 80.79202 * 19 18 17 39 39 H 1.09001 * 110.03511 * 238.57480 * 20 16 7 40 40 H 1.09005 * 110.03357 * 359.94916 * 20 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 1 1.6766 -0.2074 -2.1392 6 6 1.5300 -2.1638 -1.2493 7 7 3.5050 -0.7207 -1.2495 8 6 4.1892 -0.0889 -2.2535 9 1 5.1552 0.3513 -2.0546 10 6 3.6413 -0.0143 -3.5267 11 7 3.8458 1.0528 -4.2696 12 14 2.6138 -1.4283 -4.1857 13 1 1.2015 -1.2536 -3.7615 14 1 2.6869 -1.4441 -5.6688 15 1 3.1364 -2.7113 -3.6507 16 6 4.2380 -1.3961 -0.1759 17 6 5.1337 -0.3854 0.5695 18 6 6.4163 -1.1875 0.9021 19 6 6.6098 -2.0619 -0.3617 20 6 5.1765 -2.4621 -0.7680 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8933 -0.5138 0.8900 25 1 1.6766 1.9564 0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.8681 -2.6686 -2.1542 29 1 1.9182 -2.6863 -0.3750 30 1 0.4404 -2.1639 -1.2186 31 1 3.4632 1.1048 -5.1595 32 1 3.5381 -1.8596 0.5194 33 1 5.3699 0.4621 -0.0740 34 1 4.6475 -0.0470 1.4845 35 1 6.2646 -1.8106 1.7834 36 1 7.2665 -0.5204 1.0441 37 1 7.2009 -2.9470 -0.1264 38 1 7.0852 -1.4871 -1.1566 39 1 4.9326 -3.4428 -0.3594 40 1 5.0860 -2.4775 -1.8541 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000319620414.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:53 Heat of formation + Delta-G solvation = -12.503851 kcal Electronic energy + Delta-G solvation = -17395.191348 eV Core-core repulsion = 15016.224507 eV Total energy + Delta-G solvation = -2378.966841 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.03371 -37.57888 -34.89570 -33.08227 -30.81624 -29.31189 -28.52786 -27.68043 -25.42497 -23.41154 -21.40775 -21.17652 -20.24894 -18.31369 -17.11924 -16.85802 -15.80226 -15.61269 -15.25934 -14.89350 -14.80815 -14.42712 -14.02230 -13.71094 -13.40885 -12.99414 -12.97098 -12.60608 -12.50023 -12.34769 -12.15371 -11.90471 -11.78794 -11.77004 -11.64337 -11.48793 -11.39593 -11.32831 -11.12745 -10.91558 -10.39750 -8.66815 -8.15088 -5.28649 1.33595 1.42700 1.50074 2.49747 3.02699 3.42961 3.97118 3.99165 4.05149 4.24061 4.27351 4.42380 4.56966 4.65418 4.71464 4.74814 4.79260 4.90211 4.92970 4.96558 4.98696 5.03503 5.09834 5.15629 5.21476 5.22317 5.24469 5.31564 5.33969 5.48273 5.57990 5.63727 5.65986 5.68433 5.76578 6.04423 6.29765 7.13066 7.84583 8.23483 9.05041 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.019202 B = 0.014963 C = 0.011223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1457.832731 B = 1870.834881 C = 2494.240642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.097 4.097 3 C -0.124 4.124 4 C 0.158 3.842 5 H 0.041 0.959 6 C -0.172 4.172 7 N -0.594 5.594 8 C -0.220 4.220 9 H 0.048 0.952 10 C -0.015 4.015 11 N -0.936 5.936 12 Si 0.902 3.098 13 H -0.271 1.271 14 H -0.324 1.324 15 H -0.271 1.271 16 C 0.166 3.834 17 C -0.129 4.129 18 C -0.112 4.112 19 C -0.116 4.116 20 C -0.135 4.135 21 H 0.038 0.962 22 H 0.069 0.931 23 H 0.065 0.935 24 H 0.075 0.925 25 H 0.059 0.941 26 H 0.045 0.955 27 H 0.023 0.977 28 H 0.028 0.972 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.256 0.744 32 H 0.075 0.925 33 H 0.041 0.959 34 H 0.065 0.935 35 H 0.083 0.917 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.038 0.962 39 H 0.066 0.934 40 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.658 -6.117 12.286 13.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 C -0.182 4.182 4 C 0.051 3.949 5 H 0.060 0.940 6 C -0.230 4.230 7 N -0.314 5.314 8 C -0.350 4.350 9 H 0.066 0.934 10 C -0.211 4.211 11 N -0.581 5.581 12 Si 0.732 3.268 13 H -0.198 1.198 14 H -0.254 1.254 15 H -0.197 1.197 16 C 0.060 3.940 17 C -0.168 4.168 18 C -0.150 4.150 19 C -0.154 4.154 20 C -0.174 4.174 21 H 0.057 0.943 22 H 0.088 0.912 23 H 0.084 0.916 24 H 0.093 0.907 25 H 0.078 0.922 26 H 0.064 0.936 27 H 0.042 0.958 28 H 0.047 0.953 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.065 0.935 32 H 0.093 0.907 33 H 0.060 0.940 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.057 0.943 39 H 0.085 0.915 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -2.683 -6.045 12.151 13.834 hybrid contribution -0.263 -0.351 -1.462 1.526 sum -2.947 -6.395 10.689 12.800 Atomic orbital electron populations 1.21865 0.94466 1.02120 1.01536 1.21489 0.95787 0.96245 0.98232 1.21562 1.01055 0.95997 0.99569 1.20798 0.83130 0.94090 0.96834 0.94043 1.22518 1.01367 0.97855 1.01254 1.44462 1.00483 1.61473 1.24981 1.18445 1.03278 1.25452 0.87794 0.93396 1.25697 0.99838 0.98424 0.97159 1.70167 1.49224 1.26987 1.11746 0.86628 0.80244 0.84645 0.75272 1.19791 1.25391 1.19659 1.21201 0.92495 0.91175 0.89112 1.22720 0.96506 0.98587 0.99026 1.22398 0.97061 0.98057 0.97487 1.22223 0.96271 0.99439 0.97428 1.22564 0.95955 0.98739 1.00160 0.94264 0.91246 0.91574 0.90716 0.92176 0.93612 0.95800 0.95263 0.91065 0.90925 0.93497 0.90665 0.93980 0.91631 0.89841 0.91840 0.90668 0.94277 0.91544 0.94363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.94 8.84 71.98 0.64 -3.30 16 2 C -0.10 -3.25 2.39 -10.79 -0.03 -3.28 16 3 C -0.12 -4.52 9.04 71.98 0.65 -3.87 16 4 C 0.16 6.44 1.14 44.99 0.05 6.49 16 5 H 0.04 2.01 5.03 -2.39 -0.01 2.00 16 6 C -0.17 -6.12 8.09 71.98 0.58 -5.54 16 7 N -0.59 -26.24 1.24 -650.28 -0.81 -27.05 16 8 C -0.22 -11.95 8.23 84.03 0.69 -11.26 16 9 H 0.05 2.89 6.98 -2.91 -0.02 2.87 16 10 C -0.02 -0.88 4.83 84.86 0.41 -0.47 16 11 N -0.94 -58.65 13.97 21.65 0.30 -58.35 16 12 Si 0.90 46.45 23.50 68.60 1.61 48.06 16 13 H -0.27 -13.26 6.28 99.48 0.62 -12.64 16 14 H -0.32 -17.43 7.11 99.48 0.71 -16.72 16 15 H -0.27 -13.61 6.61 99.48 0.66 -12.95 16 16 C 0.17 6.06 2.49 45.71 0.11 6.18 16 17 C -0.13 -4.39 5.84 31.67 0.18 -4.21 16 18 C -0.11 -3.15 6.91 31.89 0.22 -2.92 16 19 C -0.12 -3.66 6.83 31.67 0.22 -3.44 16 20 C -0.13 -4.85 6.26 31.32 0.20 -4.65 16 21 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 22 H 0.07 1.60 8.14 -2.39 -0.02 1.59 16 23 H 0.07 1.63 6.39 -2.39 -0.02 1.62 16 24 H 0.07 2.26 7.22 -2.39 -0.02 2.24 16 25 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.04 1.87 7.03 -2.38 -0.02 1.85 16 27 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.03 1.16 4.69 -2.39 -0.01 1.15 16 29 H 0.07 2.21 6.86 -2.38 -0.02 2.19 16 30 H 0.07 2.24 6.34 -2.39 -0.02 2.22 16 31 H 0.26 15.48 8.31 -92.70 -0.77 14.71 16 32 H 0.08 2.43 6.11 -2.39 -0.01 2.41 16 33 H 0.04 1.75 6.50 -2.39 -0.02 1.73 16 34 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 38 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.04 1.67 7.27 -2.38 -0.02 1.66 16 Total: -1.00 -62.81 289.75 5.89 -56.92 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: 0.85 Total: 10.68 kcal Atomic # 6 Polarization: -34.20 SS G_CDS: 3.93 Total: -30.27 kcal Atomic # 7 Polarization: -84.89 SS G_CDS: -0.51 Total: -85.39 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 1.61 Total: 48.06 kcal Total: -62.81 5.89 -56.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000319620414.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.418 kcal (2) G-P(sol) polarization free energy of solvation -62.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds