Wall clock time and date at job start Mon Mar 30 2020 02:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47027 * 2 1 4 4 C 1.50699 * 109.46738 * 119.99726 * 2 1 3 5 5 H 1.07999 * 119.99936 * 120.00550 * 4 2 1 6 6 C 1.37874 * 120.00118 * 299.99587 * 4 2 1 7 7 N 1.31515 * 120.00066 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00131 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.46992 * 90.00502 * 8 6 4 10 10 H 1.48497 * 109.47102 * 210.00556 * 8 6 4 11 11 H 1.48502 * 109.46685 * 330.00561 * 8 6 4 12 12 N 1.46898 * 109.47335 * 239.99644 * 2 1 3 13 13 C 1.46900 * 110.99564 * 89.29045 * 12 2 1 14 14 H 1.08997 * 109.47635 * 341.36197 * 13 12 2 15 15 C 1.53003 * 109.46998 * 221.36037 * 13 12 2 16 16 C 1.53003 * 117.49898 * 132.29722 * 15 13 12 17 17 C 1.52999 * 117.49713 * 63.63514 * 15 13 12 18 18 C 1.52997 * 109.47366 * 101.36513 * 13 12 2 19 19 C 1.53005 * 109.47320 * 56.69503 * 18 13 12 20 20 C 1.52997 * 109.47558 * 176.69823 * 18 13 12 21 21 C 1.53006 * 109.46860 * 296.69757 * 18 13 12 22 22 H 1.08997 * 109.47331 * 186.12612 * 1 2 3 23 23 H 1.08998 * 109.47552 * 306.13194 * 1 2 3 24 24 H 1.09005 * 109.47280 * 66.13172 * 1 2 3 25 25 H 0.97001 * 120.00241 * 179.97438 * 7 6 4 26 26 H 1.00903 * 110.99753 * 325.34032 * 12 2 1 27 27 H 1.09004 * 115.55010 * 277.96844 * 15 13 12 28 28 H 1.09000 * 117.49906 * 359.97438 * 16 15 13 29 29 H 1.08999 * 117.49839 * 145.02411 * 16 15 13 30 30 H 1.09006 * 117.49781 * 214.97550 * 17 15 13 31 31 H 1.08999 * 117.49989 * 359.97438 * 17 15 13 32 32 H 1.09000 * 109.46959 * 60.00565 * 19 18 13 33 33 H 1.09001 * 109.47040 * 180.02562 * 19 18 13 34 34 H 1.09002 * 109.47084 * 300.00611 * 19 18 13 35 35 H 1.08996 * 109.47047 * 59.99597 * 20 18 13 36 36 H 1.09001 * 109.47288 * 179.97438 * 20 18 13 37 37 H 1.09000 * 109.47185 * 299.99719 * 20 18 13 38 38 H 1.09003 * 109.47127 * 61.33775 * 21 18 13 39 39 H 1.08998 * 109.47187 * 181.33625 * 21 18 13 40 40 H 1.08994 * 109.47090 * 301.33486 * 21 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 0.9428 0.8299 2.6033 8 14 2.3223 -1.1194 4.0081 9 1 3.6303 -0.5438 4.4120 10 1 1.3442 -0.9488 5.1123 11 1 2.4879 -2.5652 3.7123 12 7 2.0197 -0.6926 -1.1994 13 6 2.1792 0.2441 -2.3198 14 1 1.6019 1.1475 -2.1232 15 6 1.6774 -0.4116 -3.6079 16 6 0.7372 0.4053 -4.4966 17 6 0.1926 -0.7727 -3.6848 18 6 3.6574 0.6071 -2.4747 19 6 4.4784 -0.6693 -2.6687 20 6 3.8343 1.5172 -3.6917 21 6 4.1377 1.3364 -1.2183 22 1 -0.3634 -1.0218 0.1097 23 1 -0.3634 0.6059 0.8300 24 1 -0.3634 0.4158 -0.9398 25 1 0.7081 1.1611 3.4843 26 1 1.4097 -1.4561 -1.4504 27 1 2.3839 -1.0787 -4.1020 28 1 0.4758 1.4097 -4.1633 29 1 0.8249 0.2754 -5.5753 30 1 -0.0778 -1.6771 -4.2299 31 1 -0.4266 -0.5436 -2.8176 32 1 4.1362 -1.1889 -3.5637 33 1 5.5316 -0.4107 -2.7786 34 1 4.3524 -1.3178 -1.8016 35 1 3.2494 2.4265 -3.5535 36 1 4.8873 1.7761 -3.8018 37 1 3.4921 0.9976 -4.5867 38 1 4.0339 0.6794 -0.3547 39 1 5.1844 1.6160 -1.3383 40 1 3.5372 2.2333 -1.0669 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000324214092.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:25 Heat of formation + Delta-G solvation = -8.745876 kcal Electronic energy + Delta-G solvation = -16890.000089 eV Core-core repulsion = 14511.196206 eV Total energy + Delta-G solvation = -2378.803883 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.32185 -36.75608 -36.30787 -33.84795 -30.19640 -28.10596 -27.90640 -27.17240 -25.88986 -23.27518 -21.93282 -21.76132 -19.41186 -18.19542 -16.98247 -16.72395 -15.94753 -15.51674 -15.03711 -14.86893 -14.36632 -14.13538 -13.90646 -13.54711 -12.99745 -12.94703 -12.92363 -12.78773 -12.57754 -12.35435 -12.28227 -12.26307 -12.08263 -11.87676 -11.68907 -11.40006 -11.17278 -10.99358 -10.94617 -10.67001 -10.42538 -8.77645 -8.05267 -6.14130 1.42183 1.43032 1.53258 2.45627 2.94311 3.23402 3.62797 3.82545 4.01304 4.22954 4.25547 4.35040 4.44528 4.51318 4.71778 4.76365 4.82822 4.88866 4.91665 4.94292 5.02858 5.06984 5.07577 5.16121 5.20837 5.30043 5.33810 5.38639 5.43185 5.50011 5.54600 5.71954 5.74998 5.83236 5.91573 6.35858 6.78138 6.97297 7.05711 7.55623 9.00285 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.030079 B = 0.008630 C = 0.007554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.655533 B = 3243.783259 C = 3705.758330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.222 3.778 3 H 0.006 0.994 4 C -0.502 4.502 5 H 0.052 0.948 6 C 0.008 3.992 7 N -0.924 5.924 8 Si 0.953 3.047 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.270 1.270 12 N -0.671 5.671 13 C 0.131 3.869 14 H 0.015 0.985 15 C -0.155 4.155 16 C -0.163 4.163 17 C -0.189 4.189 18 C -0.050 4.050 19 C -0.122 4.122 20 C -0.132 4.132 21 C -0.132 4.132 22 H 0.028 0.972 23 H 0.054 0.946 24 H 0.021 0.979 25 H 0.258 0.742 26 H 0.329 0.671 27 H 0.120 0.880 28 H 0.081 0.919 29 H 0.116 0.884 30 H 0.110 0.890 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.047 0.953 35 H 0.041 0.959 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.044 0.956 39 H 0.055 0.945 40 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.761 -1.147 -13.679 14.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.113 3.887 3 H 0.024 0.976 4 C -0.541 4.541 5 H 0.071 0.929 6 C -0.190 4.190 7 N -0.565 5.565 8 Si 0.780 3.220 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.194 1.194 12 N -0.300 5.300 13 C 0.021 3.979 14 H 0.033 0.967 15 C -0.173 4.173 16 C -0.201 4.201 17 C -0.226 4.226 18 C -0.051 4.051 19 C -0.179 4.179 20 C -0.189 4.189 21 C -0.190 4.190 22 H 0.047 0.953 23 H 0.072 0.928 24 H 0.040 0.960 25 H 0.067 0.933 26 H 0.146 0.854 27 H 0.138 0.862 28 H 0.100 0.900 29 H 0.134 0.866 30 H 0.128 0.872 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 3.351 -1.006 -13.335 13.787 hybrid contribution -0.984 0.095 1.210 1.563 sum 2.367 -0.911 -12.125 12.387 Atomic orbital electron populations 1.22254 1.00753 0.99382 0.98680 1.18981 0.89205 0.92770 0.87759 0.97619 1.21441 1.29647 1.11989 0.90991 0.92928 1.25665 0.95709 0.95927 1.01704 1.70030 1.38426 1.24461 1.23620 0.85626 0.77835 0.79167 0.79385 1.20573 1.21215 1.19424 1.60662 1.54438 1.11270 1.03676 1.21075 0.95105 0.93010 0.88738 0.96707 1.22609 0.92879 1.03661 0.98176 1.23018 1.03037 0.95529 0.98496 1.23007 0.96371 1.00529 1.02706 1.20441 0.94232 0.95880 0.94533 1.21659 0.98150 0.96577 1.01527 1.21812 1.01447 0.98517 0.97143 1.21783 0.99558 0.98927 0.98710 0.95304 0.92757 0.96032 0.93326 0.85370 0.86222 0.90014 0.86622 0.87183 0.90921 0.92053 0.93099 0.93374 0.93940 0.92089 0.91190 0.93654 0.92565 0.95526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.40 8.86 71.98 0.64 -6.76 16 2 C 0.22 11.12 1.46 44.17 0.06 11.19 16 3 H 0.01 0.33 6.31 -2.39 -0.02 0.32 16 4 C -0.50 -27.90 8.84 25.60 0.23 -27.67 16 5 H 0.05 2.96 7.81 -2.91 -0.02 2.93 16 6 C 0.01 0.42 5.30 84.65 0.45 0.87 16 7 N -0.92 -54.16 11.39 21.45 0.24 -53.91 16 8 Si 0.95 44.81 29.54 68.60 2.03 46.84 16 9 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 10 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 11 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 12 N -0.67 -27.61 4.87 -473.32 -2.31 -29.91 16 13 C 0.13 4.52 1.54 44.92 0.07 4.59 16 14 H 0.01 0.59 7.26 -2.39 -0.02 0.58 16 15 C -0.15 -4.16 3.49 -10.79 -0.04 -4.20 16 16 C -0.16 -3.78 10.02 30.62 0.31 -3.48 16 17 C -0.19 -4.89 9.63 30.62 0.29 -4.60 16 18 C -0.05 -1.58 0.62 -52.18 -0.03 -1.61 16 19 C -0.12 -3.56 8.08 71.98 0.58 -2.98 16 20 C -0.13 -3.32 8.19 71.98 0.59 -2.73 16 21 C -0.13 -4.94 7.29 71.98 0.52 -4.41 16 22 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.05 2.97 6.26 -2.39 -0.01 2.96 16 24 H 0.02 0.93 7.04 -2.38 -0.02 0.91 16 25 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 26 H 0.33 13.08 7.33 -89.69 -0.66 12.43 16 27 H 0.12 2.92 6.30 -2.38 -0.02 2.90 16 28 H 0.08 2.05 8.07 -2.39 -0.02 2.03 16 29 H 0.12 2.07 8.14 -2.39 -0.02 2.06 16 30 H 0.11 2.39 8.14 -2.38 -0.02 2.37 16 31 H 0.07 2.23 7.05 -2.39 -0.02 2.22 16 32 H 0.06 1.54 6.32 -2.39 -0.02 1.52 16 33 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.05 1.67 7.52 -2.39 -0.02 1.65 16 35 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.07 1.53 6.98 -2.39 -0.02 1.51 16 38 H 0.04 2.03 6.85 -2.39 -0.02 2.01 16 39 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.03 1.03 8.02 -2.39 -0.02 1.01 16 Total: -1.00 -59.17 304.85 3.97 -55.20 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: 0.33 Total: 23.58 kcal Atomic # 6 Polarization: -45.47 SS G_CDS: 3.67 Total: -41.79 kcal Atomic # 7 Polarization: -81.76 SS G_CDS: -2.06 Total: -83.82 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -59.17 3.97 -55.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000324214092.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.453 kcal (2) G-P(sol) polarization free energy of solvation -59.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds