Wall clock time and date at job start Mon Mar 30 2020 02:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47641 * 2 1 4 4 C 1.50700 * 109.47202 * 239.99602 * 2 1 3 5 5 H 1.07998 * 120.00028 * 239.99973 * 4 2 1 6 6 C 1.37873 * 120.00047 * 60.00426 * 4 2 1 7 7 N 1.31521 * 120.00063 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00262 * 179.97438 * 6 4 2 9 9 H 1.48509 * 109.46993 * 60.00003 * 8 6 4 10 10 H 1.48502 * 109.47335 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47358 * 300.00364 * 8 6 4 12 12 N 1.46904 * 109.46818 * 119.99820 * 2 1 3 13 13 C 1.46890 * 111.00189 * 272.02356 * 12 2 1 14 14 H 1.09007 * 109.47605 * 28.66379 * 13 12 2 15 15 C 1.52996 * 109.47500 * 148.66721 * 13 12 2 16 16 C 1.53000 * 117.49689 * 8.61853 * 15 13 12 17 17 C 1.52997 * 60.00154 * 252.51470 * 16 15 13 18 18 C 1.53005 * 109.47634 * 268.66852 * 13 12 2 19 19 C 1.53001 * 109.46725 * 297.50417 * 18 13 12 20 20 C 1.53002 * 109.47108 * 57.49723 * 18 13 12 21 21 C 1.52994 * 109.47584 * 177.50403 * 18 13 12 22 22 H 1.08994 * 109.47641 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47215 * 300.00456 * 1 2 3 24 24 H 1.09004 * 109.46614 * 59.99866 * 1 2 3 25 25 H 0.96998 * 119.99985 * 179.97438 * 7 6 4 26 26 H 1.00899 * 110.99919 * 35.97720 * 12 2 1 27 27 H 1.08998 * 115.55327 * 154.33029 * 15 13 12 28 28 H 1.09000 * 117.49916 * 0.02562 * 16 15 13 29 29 H 1.09004 * 117.50018 * 145.02077 * 16 15 13 30 30 H 1.09004 * 117.49352 * 252.50940 * 17 16 15 31 31 H 1.08994 * 117.51815 * 107.48415 * 17 16 15 32 32 H 1.09008 * 109.47369 * 59.99549 * 19 18 13 33 33 H 1.08996 * 109.47138 * 179.97438 * 19 18 13 34 34 H 1.09003 * 109.47364 * 299.99469 * 19 18 13 35 35 H 1.09002 * 109.46900 * 54.54437 * 20 18 13 36 36 H 1.08995 * 109.47077 * 174.54248 * 20 18 13 37 37 H 1.09003 * 109.47283 * 294.54893 * 20 18 13 38 38 H 1.08999 * 109.47447 * 59.99671 * 21 18 13 39 39 H 1.09005 * 109.47137 * 179.97438 * 21 18 13 40 40 H 1.09001 * 109.46636 * 299.99776 * 21 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9437 0.8302 -2.6035 8 14 2.3226 -1.1197 -4.0078 9 1 1.8280 -2.5200 -4.0080 10 1 1.8281 -0.4194 -5.2204 11 1 3.8076 -1.1193 -4.0076 12 7 2.0196 -0.6925 1.1995 13 6 2.1494 0.2382 2.3285 14 1 1.4257 1.0459 2.2188 15 6 1.8858 -0.5083 3.6378 16 6 1.7544 -2.0311 3.5686 17 6 0.5157 -1.1667 3.8120 18 6 3.5641 0.8205 2.3496 19 6 4.5762 -0.3063 2.5661 20 6 3.8502 1.5136 1.0158 21 6 3.6807 1.8364 3.4876 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 0.7097 1.1617 -3.4845 26 1 1.4214 -1.4692 1.4381 27 1 2.3562 -0.0832 4.5243 28 1 1.8561 -2.5011 2.5904 29 1 2.1386 -2.6082 4.4097 30 1 0.0850 -1.1751 4.8133 31 1 -0.1979 -1.0677 2.9941 32 1 4.4932 -1.0301 1.7552 33 1 5.5841 0.1085 2.5806 34 1 4.3725 -0.8001 3.5162 35 1 3.0727 2.2509 0.8155 36 1 4.8187 2.0112 1.0654 37 1 3.8627 0.7726 0.2166 38 1 3.4769 1.3426 4.4377 39 1 4.6887 2.2509 3.5028 40 1 2.9596 2.6391 3.3333 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000324214093.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:26 Heat of formation + Delta-G solvation = 16.620483 kcal Electronic energy + Delta-G solvation = -17008.465348 eV Core-core repulsion = 14630.761433 eV Total energy + Delta-G solvation = -2377.703915 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.15136 -35.42030 -34.52840 -31.80858 -28.28129 -26.87629 -26.56741 -25.12990 -24.65490 -22.03010 -20.48554 -19.97660 -17.74204 -16.44697 -15.46127 -14.86796 -14.71137 -14.21177 -13.62509 -13.02470 -12.91071 -12.53021 -12.13284 -11.99413 -11.61431 -11.41495 -11.27421 -11.07237 -10.89161 -10.88245 -10.73572 -10.59436 -10.51479 -10.13835 -10.11564 -9.74686 -9.71055 -9.60512 -9.51864 -8.79147 -8.26864 -7.09969 -5.92908 -3.95190 3.36811 3.40953 3.44273 4.14428 4.48323 5.01704 5.15683 5.23454 5.38271 5.41788 5.50990 5.56038 5.68578 5.86643 5.93491 6.09039 6.12772 6.23174 6.28531 6.31821 6.41368 6.43930 6.46739 6.64149 6.73561 6.74943 6.79480 6.87917 6.90852 7.11369 7.20795 7.35699 7.50877 7.80256 7.96695 8.38078 8.64781 8.72175 9.12326 9.69798 11.13882 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.028704 B = 0.008941 C = 0.008047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.226873 B = 3131.019353 C = 3478.824214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.203 3.797 3 H 0.048 0.952 4 C -0.489 4.489 5 H 0.060 0.940 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.893 3.107 9 H -0.279 1.279 10 H -0.290 1.290 11 H -0.278 1.278 12 N -0.677 5.677 13 C 0.127 3.873 14 H 0.039 0.961 15 C -0.149 4.149 16 C -0.176 4.176 17 C -0.193 4.193 18 C -0.049 4.049 19 C -0.126 4.126 20 C -0.139 4.139 21 C -0.142 4.142 22 H 0.024 0.976 23 H 0.002 0.998 24 H 0.087 0.913 25 H 0.259 0.741 26 H 0.325 0.675 27 H 0.102 0.898 28 H 0.110 0.890 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.034 0.966 34 H 0.042 0.958 35 H 0.045 0.955 36 H 0.033 0.967 37 H 0.088 0.912 38 H 0.049 0.951 39 H 0.048 0.952 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.533 -0.894 11.229 11.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.095 3.905 3 H 0.065 0.935 4 C -0.528 4.528 5 H 0.078 0.922 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.722 3.278 9 H -0.205 1.205 10 H -0.216 1.216 11 H -0.204 1.204 12 N -0.310 5.310 13 C 0.016 3.984 14 H 0.057 0.943 15 C -0.168 4.168 16 C -0.214 4.214 17 C -0.230 4.230 18 C -0.050 4.050 19 C -0.183 4.183 20 C -0.196 4.196 21 C -0.200 4.200 22 H 0.043 0.957 23 H 0.022 0.978 24 H 0.106 0.894 25 H 0.068 0.932 26 H 0.145 0.855 27 H 0.120 0.880 28 H 0.128 0.872 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.110 0.890 32 H 0.090 0.910 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.052 0.948 37 H 0.107 0.893 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.110 -0.733 10.886 11.345 hybrid contribution -0.796 -0.224 -0.606 1.025 sum 2.314 -0.957 10.280 10.581 Atomic orbital electron populations 1.22461 1.01276 0.98884 1.00286 1.19441 0.89156 0.95322 0.86578 0.93455 1.21115 1.29877 1.12207 0.89624 0.92188 1.24931 0.95460 0.95224 0.98895 1.69875 1.37448 1.23200 1.23245 0.86639 0.79165 0.79614 0.82382 1.20529 1.21605 1.20373 1.60982 1.56013 1.10314 1.03662 1.20944 0.95076 0.93937 0.88424 0.94282 1.22637 0.99213 0.95082 0.99831 1.23012 1.01408 0.93636 1.03315 1.22990 0.91719 1.06109 1.02210 1.20392 0.95180 0.94567 0.94835 1.21695 0.96449 0.98484 1.01658 1.21969 0.98946 1.00823 0.97869 1.21957 1.00867 0.98887 0.98302 0.95682 0.97850 0.89412 0.93163 0.85474 0.88026 0.87211 0.89658 0.89543 0.88989 0.90960 0.94661 0.93850 0.93553 0.94761 0.89339 0.93205 0.93259 0.93273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.08 8.93 37.16 0.33 -3.75 16 2 C 0.20 4.90 1.31 -68.86 -0.09 4.81 16 3 H 0.05 1.24 5.04 -51.93 -0.26 0.98 16 4 C -0.49 -13.19 8.56 -34.44 -0.29 -13.48 16 5 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 6 C 0.06 1.51 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -25.49 11.32 55.43 0.63 -24.87 16 8 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 N -0.68 -13.70 4.76 -100.96 -0.48 -14.18 16 13 C 0.13 2.24 1.78 -67.72 -0.12 2.12 16 14 H 0.04 0.77 7.33 -51.92 -0.38 0.39 16 15 C -0.15 -2.21 4.13 -90.62 -0.37 -2.58 16 16 C -0.18 -2.47 9.64 -26.73 -0.26 -2.73 16 17 C -0.19 -2.71 9.87 -26.73 -0.26 -2.98 16 18 C -0.05 -0.81 0.62 -154.51 -0.10 -0.91 16 19 C -0.13 -1.99 8.06 37.16 0.30 -1.69 16 20 C -0.14 -2.63 6.93 37.16 0.26 -2.37 16 21 C -0.14 -2.00 8.26 37.15 0.31 -1.70 16 22 H 0.02 0.58 8.12 -51.93 -0.42 0.15 16 23 H 0.00 0.06 7.76 -51.93 -0.40 -0.35 16 24 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 25 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 26 H 0.32 6.40 4.96 -39.29 -0.19 6.21 16 27 H 0.10 1.38 6.22 -51.93 -0.32 1.06 16 28 H 0.11 1.70 6.02 -51.93 -0.31 1.39 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.09 1.43 7.98 -51.93 -0.41 1.01 16 32 H 0.07 1.29 7.68 -51.92 -0.40 0.90 16 33 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.04 0.63 7.14 -51.93 -0.37 0.26 16 35 H 0.05 0.92 7.21 -51.93 -0.37 0.55 16 36 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.09 1.96 6.42 -51.93 -0.33 1.63 16 38 H 0.05 0.63 6.27 -51.93 -0.33 0.31 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 299.54 15.07 4.51 4.51 Total: -1.00 -26.85 299.54 -7.67 -34.52 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -6.91 Total: 7.37 kcal Atomic # 6 Polarization: -23.44 SS G_CDS: -0.40 Total: -23.84 kcal Atomic # 7 Polarization: -39.19 SS G_CDS: 0.15 Total: -39.05 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -26.85 -7.67 -34.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000324214093.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.136 kcal (2) G-P(sol) polarization free energy of solvation -26.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds