Wall clock time and date at job start Mon Mar 30 2020 02:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47641 * 2 1 4 4 C 1.50700 * 109.47202 * 239.99602 * 2 1 3 5 5 H 1.07998 * 120.00028 * 239.99973 * 4 2 1 6 6 C 1.37873 * 120.00047 * 60.00426 * 4 2 1 7 7 N 1.31521 * 120.00063 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00262 * 179.97438 * 6 4 2 9 9 H 1.48509 * 109.46993 * 60.00003 * 8 6 4 10 10 H 1.48502 * 109.47335 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47358 * 300.00364 * 8 6 4 12 12 N 1.46904 * 109.46818 * 119.99820 * 2 1 3 13 13 C 1.46890 * 111.00189 * 272.02356 * 12 2 1 14 14 H 1.09007 * 109.47605 * 28.66379 * 13 12 2 15 15 C 1.52996 * 109.47500 * 148.66721 * 13 12 2 16 16 C 1.53000 * 117.49689 * 8.61853 * 15 13 12 17 17 C 1.52997 * 60.00154 * 252.51470 * 16 15 13 18 18 C 1.53005 * 109.47634 * 268.66852 * 13 12 2 19 19 C 1.53001 * 109.46725 * 297.50417 * 18 13 12 20 20 C 1.53002 * 109.47108 * 57.49723 * 18 13 12 21 21 C 1.52994 * 109.47584 * 177.50403 * 18 13 12 22 22 H 1.08994 * 109.47641 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47215 * 300.00456 * 1 2 3 24 24 H 1.09004 * 109.46614 * 59.99866 * 1 2 3 25 25 H 0.96998 * 119.99985 * 179.97438 * 7 6 4 26 26 H 1.00899 * 110.99919 * 35.97720 * 12 2 1 27 27 H 1.08998 * 115.55327 * 154.33029 * 15 13 12 28 28 H 1.09000 * 117.49916 * 0.02562 * 16 15 13 29 29 H 1.09004 * 117.50018 * 145.02077 * 16 15 13 30 30 H 1.09004 * 117.49352 * 252.50940 * 17 16 15 31 31 H 1.08994 * 117.51815 * 107.48415 * 17 16 15 32 32 H 1.09008 * 109.47369 * 59.99549 * 19 18 13 33 33 H 1.08996 * 109.47138 * 179.97438 * 19 18 13 34 34 H 1.09003 * 109.47364 * 299.99469 * 19 18 13 35 35 H 1.09002 * 109.46900 * 54.54437 * 20 18 13 36 36 H 1.08995 * 109.47077 * 174.54248 * 20 18 13 37 37 H 1.09003 * 109.47283 * 294.54893 * 20 18 13 38 38 H 1.08999 * 109.47447 * 59.99671 * 21 18 13 39 39 H 1.09005 * 109.47137 * 179.97438 * 21 18 13 40 40 H 1.09001 * 109.46636 * 299.99776 * 21 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9437 0.8302 -2.6035 8 14 2.3226 -1.1197 -4.0078 9 1 1.8280 -2.5200 -4.0080 10 1 1.8281 -0.4194 -5.2204 11 1 3.8076 -1.1193 -4.0076 12 7 2.0196 -0.6925 1.1995 13 6 2.1494 0.2382 2.3285 14 1 1.4257 1.0459 2.2188 15 6 1.8858 -0.5083 3.6378 16 6 1.7544 -2.0311 3.5686 17 6 0.5157 -1.1667 3.8120 18 6 3.5641 0.8205 2.3496 19 6 4.5762 -0.3063 2.5661 20 6 3.8502 1.5136 1.0158 21 6 3.6807 1.8364 3.4876 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 0.7097 1.1617 -3.4845 26 1 1.4214 -1.4692 1.4381 27 1 2.3562 -0.0832 4.5243 28 1 1.8561 -2.5011 2.5904 29 1 2.1386 -2.6082 4.4097 30 1 0.0850 -1.1751 4.8133 31 1 -0.1979 -1.0677 2.9941 32 1 4.4932 -1.0301 1.7552 33 1 5.5841 0.1085 2.5806 34 1 4.3725 -0.8001 3.5162 35 1 3.0727 2.2509 0.8155 36 1 4.8187 2.0112 1.0654 37 1 3.8627 0.7726 0.2166 38 1 3.4769 1.3426 4.4377 39 1 4.6887 2.2509 3.5028 40 1 2.9596 2.6391 3.3333 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000324214093.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:26 Heat of formation + Delta-G solvation = 2.360414 kcal Electronic energy + Delta-G solvation = -17009.083711 eV Core-core repulsion = 14630.761433 eV Total energy + Delta-G solvation = -2378.322278 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.53453 -36.72083 -36.30166 -33.75039 -30.04426 -28.24067 -27.91537 -27.15617 -26.17505 -23.16686 -22.22154 -21.40183 -19.19061 -18.28386 -17.06803 -16.58610 -16.17007 -15.77269 -14.93288 -14.70429 -14.48398 -14.12220 -13.75661 -13.51892 -13.06935 -12.96982 -12.88790 -12.79504 -12.47810 -12.40862 -12.30273 -12.19471 -12.05895 -11.82779 -11.58678 -11.40616 -11.24545 -10.90998 -10.86792 -10.64035 -10.36439 -8.79174 -8.04180 -6.13049 1.43039 1.44003 1.51432 2.46166 2.99145 3.24149 3.74321 3.81211 3.98711 4.19099 4.27886 4.30467 4.40042 4.57139 4.77248 4.81109 4.84781 4.87887 4.88285 4.93232 5.03764 5.08164 5.12734 5.18190 5.19217 5.33060 5.36747 5.39665 5.45819 5.53890 5.54355 5.73094 5.75653 5.83432 5.91812 6.37335 6.77702 6.97251 7.03868 7.56203 9.00846 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.028704 B = 0.008941 C = 0.008047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.226873 B = 3131.019353 C = 3478.824214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.211 3.789 3 H 0.024 0.976 4 C -0.501 4.501 5 H 0.051 0.949 6 C 0.009 3.991 7 N -0.923 5.923 8 Si 0.952 3.048 9 H -0.274 1.274 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.674 5.674 13 C 0.126 3.874 14 H 0.014 0.986 15 C -0.153 4.153 16 C -0.170 4.170 17 C -0.189 4.189 18 C -0.049 4.049 19 C -0.118 4.118 20 C -0.131 4.131 21 C -0.136 4.136 22 H 0.025 0.975 23 H 0.017 0.983 24 H 0.059 0.941 25 H 0.258 0.742 26 H 0.328 0.672 27 H 0.125 0.875 28 H 0.090 0.910 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.071 0.929 32 H 0.044 0.956 33 H 0.048 0.952 34 H 0.062 0.938 35 H 0.025 0.975 36 H 0.051 0.949 37 H 0.049 0.951 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.343 -1.594 13.160 13.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.102 3.898 3 H 0.042 0.958 4 C -0.540 4.540 5 H 0.069 0.931 6 C -0.189 4.189 7 N -0.564 5.564 8 Si 0.779 3.221 9 H -0.199 1.199 10 H -0.213 1.213 11 H -0.200 1.200 12 N -0.306 5.306 13 C 0.016 3.984 14 H 0.032 0.968 15 C -0.171 4.171 16 C -0.207 4.207 17 C -0.226 4.226 18 C -0.050 4.050 19 C -0.175 4.175 20 C -0.189 4.189 21 C -0.194 4.194 22 H 0.044 0.956 23 H 0.036 0.964 24 H 0.078 0.922 25 H 0.067 0.933 26 H 0.148 0.852 27 H 0.143 0.857 28 H 0.109 0.891 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.044 0.956 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 3.924 -1.444 12.830 13.494 hybrid contribution -1.048 0.010 -1.192 1.588 sum 2.876 -1.433 11.638 12.073 Atomic orbital electron populations 1.22289 1.01243 0.98602 0.99548 1.19161 0.88951 0.94064 0.87617 0.95833 1.21384 1.29606 1.11960 0.91016 0.93084 1.25639 0.95742 0.95922 1.01606 1.70006 1.38404 1.24343 1.23647 0.85705 0.78638 0.78681 0.79099 1.19942 1.21327 1.20036 1.60889 1.55474 1.10635 1.03615 1.20972 0.95284 0.93067 0.89087 0.96776 1.22576 1.00358 0.95470 0.98684 1.23016 1.01260 0.93078 1.03340 1.23019 0.91139 1.05578 1.02886 1.20419 0.94672 0.95447 0.94470 1.21603 0.96845 0.97528 1.01533 1.21856 0.99207 0.99487 0.98318 1.21891 1.01651 0.98024 0.97809 0.95581 0.96398 0.92197 0.93315 0.85163 0.85706 0.89143 0.87009 0.86958 0.91056 0.93671 0.93341 0.91890 0.95631 0.92978 0.93173 0.91069 0.91887 0.93779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.76 8.93 71.98 0.64 -7.12 16 2 C 0.21 10.52 1.31 44.17 0.06 10.58 16 3 H 0.02 1.30 5.04 -2.39 -0.01 1.29 16 4 C -0.50 -27.69 8.56 25.60 0.22 -27.48 16 5 H 0.05 2.85 7.81 -2.91 -0.02 2.83 16 6 C 0.01 0.48 5.30 84.65 0.45 0.92 16 7 N -0.92 -53.81 11.32 21.45 0.24 -53.56 16 8 Si 0.95 44.69 29.54 68.60 2.03 46.71 16 9 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 10 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 11 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 12 N -0.67 -27.62 4.76 -473.32 -2.25 -29.87 16 13 C 0.13 4.38 1.78 44.92 0.08 4.46 16 14 H 0.01 0.57 7.33 -2.38 -0.02 0.55 16 15 C -0.15 -4.12 4.13 -10.79 -0.04 -4.17 16 16 C -0.17 -4.31 9.64 30.59 0.30 -4.02 16 17 C -0.19 -4.86 9.87 30.59 0.30 -4.56 16 18 C -0.05 -1.58 0.62 -52.18 -0.03 -1.61 16 19 C -0.12 -3.49 8.06 71.98 0.58 -2.91 16 20 C -0.13 -5.05 6.93 71.98 0.50 -4.55 16 21 C -0.14 -3.46 8.26 71.98 0.59 -2.87 16 22 H 0.03 1.22 8.12 -2.39 -0.02 1.20 16 23 H 0.02 0.78 7.76 -2.39 -0.02 0.76 16 24 H 0.06 3.30 6.07 -2.39 -0.01 3.29 16 25 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 26 H 0.33 12.99 4.96 -89.69 -0.45 12.54 16 27 H 0.13 2.85 6.22 -2.39 -0.01 2.83 16 28 H 0.09 2.69 6.02 -2.39 -0.01 2.67 16 29 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.11 2.32 8.14 -2.38 -0.02 2.30 16 31 H 0.07 2.14 7.98 -2.39 -0.02 2.12 16 32 H 0.04 1.58 7.68 -2.38 -0.02 1.56 16 33 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.06 1.61 7.14 -2.39 -0.02 1.59 16 35 H 0.02 1.04 7.21 -2.39 -0.02 1.03 16 36 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.05 2.30 6.42 -2.39 -0.02 2.28 16 38 H 0.07 1.52 6.27 -2.39 -0.01 1.50 16 39 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 40 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -58.77 299.54 4.21 -54.56 By element: Atomic # 1 Polarization: 24.92 SS G_CDS: 0.55 Total: 25.47 kcal Atomic # 6 Polarization: -46.95 SS G_CDS: 3.64 Total: -43.31 kcal Atomic # 7 Polarization: -81.43 SS G_CDS: -2.01 Total: -83.44 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -58.77 4.21 -54.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000324214093.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.920 kcal (2) G-P(sol) polarization free energy of solvation -58.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds