Wall clock time and date at job start Mon Mar 30 2020 03:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46907 * 109.47243 * 2 1 4 4 C 1.46898 * 111.00054 * 300.71597 * 3 2 1 5 5 C 1.53003 * 109.47040 * 294.59620 * 4 3 2 6 6 C 1.53004 * 109.47197 * 181.29678 * 5 4 3 7 7 C 1.50702 * 109.47166 * 180.02562 * 6 5 4 8 8 H 1.07994 * 120.00086 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99652 * 180.02562 * 7 6 5 10 10 N 1.31517 * 120.00331 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99816 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.46671 * 60.00279 * 11 9 7 13 13 H 1.48499 * 109.46942 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.46969 * 300.00392 * 11 9 7 15 15 C 1.46901 * 110.99713 * 64.66875 * 3 2 1 16 16 H 1.08996 * 109.46907 * 296.04636 * 15 3 2 17 17 C 1.53000 * 109.46556 * 176.04409 * 15 3 2 18 18 C 1.53000 * 109.46945 * 56.04666 * 15 3 2 19 19 C 1.52993 * 117.49973 * 248.61870 * 18 15 3 20 20 C 1.52996 * 60.00065 * 252.51198 * 19 18 15 21 21 H 1.08997 * 109.46988 * 186.63605 * 1 2 3 22 22 H 1.09005 * 109.47008 * 306.63623 * 1 2 3 23 23 H 1.09002 * 109.47303 * 66.62958 * 1 2 3 24 24 H 1.09003 * 109.47276 * 240.00544 * 2 1 3 25 25 H 1.09002 * 109.47587 * 120.00509 * 2 1 3 26 26 H 1.09004 * 109.47104 * 54.59728 * 4 3 2 27 27 H 1.08994 * 109.47103 * 174.60223 * 4 3 2 28 28 H 1.08998 * 109.47506 * 301.30233 * 5 4 3 29 29 H 1.09007 * 109.47204 * 61.30085 * 5 4 3 30 30 H 1.09001 * 109.46890 * 300.00422 * 6 5 4 31 31 H 1.08999 * 109.46464 * 59.99954 * 6 5 4 32 32 H 0.96995 * 120.00235 * 179.97438 * 10 9 7 33 33 H 1.08996 * 109.47698 * 299.99743 * 17 15 3 34 34 H 1.09003 * 109.46559 * 180.02562 * 17 15 3 35 35 H 1.08992 * 109.47109 * 60.00818 * 17 15 3 36 36 H 1.09001 * 115.55110 * 34.32746 * 18 15 3 37 37 H 1.09003 * 117.49933 * 0.02562 * 19 18 15 38 38 H 1.09006 * 117.50264 * 145.01943 * 19 18 15 39 39 H 1.08998 * 117.49935 * 252.50615 * 20 19 18 40 40 H 1.09003 * 117.49743 * 107.49328 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5348 2.1149 -1.1790 5 6 2.1391 1.5005 -2.4433 6 6 1.6596 2.2809 -3.6689 7 6 2.2543 1.6754 -4.9142 8 1 2.9084 0.8194 -4.8391 9 6 1.9632 2.2143 -6.1494 10 7 1.1670 3.2571 -6.2409 11 14 2.7009 1.4642 -7.6930 12 1 2.2707 0.0477 -7.8092 13 1 2.2364 2.2223 -8.8824 14 1 4.1825 1.5268 -7.6143 15 6 1.6419 2.0769 1.2396 16 1 0.5561 2.1521 1.2973 17 6 2.2515 3.4802 1.2463 18 6 2.1633 1.2886 2.4428 19 6 1.1303 0.6055 3.3411 20 6 1.8704 1.8498 3.8357 21 1 -0.3633 -1.0208 0.1188 22 1 -0.3633 0.6133 0.8247 23 1 -0.3634 0.4077 -0.9434 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 0.4478 2.0478 -1.2262 27 1 1.8314 3.1611 -1.1060 28 1 3.2265 1.5467 -2.3857 29 1 1.8236 0.4606 -2.5285 30 1 0.5720 2.2346 -3.7264 31 1 1.9750 3.3207 -3.5837 32 1 0.9625 3.6364 -7.1099 33 1 3.3374 3.4051 1.1887 34 1 1.9716 3.9934 2.1663 35 1 1.8801 4.0418 0.3892 36 1 3.1164 0.7808 2.2950 37 1 0.0792 0.7173 3.0747 38 1 1.4035 -0.3521 3.7844 39 1 2.6306 1.7110 4.6043 40 1 1.3063 2.7806 3.8949 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000324778615.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:20 Heat of formation + Delta-G solvation = 9.140735 kcal Electronic energy + Delta-G solvation = -15990.976086 eV Core-core repulsion = 13612.947824 eV Total energy + Delta-G solvation = -2378.028262 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.24829 -36.40719 -33.60305 -31.57787 -31.39827 -28.26731 -26.39565 -23.94372 -23.28803 -22.34590 -21.47730 -19.70308 -18.87802 -16.48531 -16.17810 -15.15666 -15.03856 -14.71750 -14.37729 -13.82031 -13.05357 -12.89902 -12.72948 -12.29179 -12.17094 -11.87765 -11.63493 -11.48339 -11.36775 -11.25370 -10.84677 -10.67218 -10.58513 -10.55352 -10.33258 -10.28040 -9.86350 -9.48148 -9.25117 -9.00619 -8.29345 -7.89800 -5.95028 -3.96824 3.36729 3.40622 3.43555 3.71490 4.16163 4.50855 4.66872 4.85949 4.96868 5.21421 5.35176 5.40377 5.41217 5.43752 5.51075 5.63200 5.65232 5.75024 5.76335 5.89937 5.91828 6.00694 6.05365 6.13918 6.21228 6.28315 6.35272 6.46562 6.52442 6.79336 6.91007 7.21224 7.50579 7.53630 7.74161 7.90249 8.05999 8.49733 9.10304 9.66842 11.16436 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.052143 B = 0.004960 C = 0.004781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.855655 B = 5644.054711 C = 5854.964259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.050 3.950 3 N -0.530 5.530 4 C 0.048 3.952 5 C -0.103 4.103 6 C 0.022 3.978 7 C -0.517 4.517 8 H 0.054 0.946 9 C 0.056 3.944 10 N -0.897 5.897 11 Si 0.891 3.109 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.277 1.277 15 C 0.108 3.892 16 H 0.039 0.961 17 C -0.145 4.145 18 C -0.135 4.135 19 C -0.184 4.184 20 C -0.179 4.179 21 H 0.054 0.946 22 H 0.051 0.949 23 H 0.061 0.939 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.031 0.969 27 H 0.072 0.928 28 H 0.054 0.946 29 H 0.046 0.954 30 H 0.012 0.988 31 H 0.015 0.985 32 H 0.260 0.740 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.110 0.890 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.323 -3.515 17.907 18.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.078 4.078 3 N -0.254 5.254 4 C -0.079 4.079 5 C -0.141 4.141 6 C -0.015 4.015 7 C -0.556 4.556 8 H 0.072 0.928 9 C -0.145 4.145 10 N -0.537 5.537 11 Si 0.719 3.281 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.202 1.202 15 C 0.000 4.000 16 H 0.057 0.943 17 C -0.203 4.203 18 C -0.154 4.154 19 C -0.221 4.221 20 C -0.217 4.217 21 H 0.073 0.927 22 H 0.070 0.930 23 H 0.080 0.920 24 H 0.097 0.903 25 H 0.088 0.912 26 H 0.050 0.950 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.031 0.969 31 H 0.033 0.967 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.128 0.872 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.116 -3.396 17.751 18.073 hybrid contribution -0.614 -0.361 -0.873 1.127 sum -0.498 -3.757 16.878 17.298 Atomic orbital electron populations 1.22404 0.98784 1.01642 1.02098 1.22135 0.92629 0.90648 1.02417 1.62338 1.59410 1.02080 1.01527 1.22401 0.97335 0.98182 0.89950 1.21627 0.99995 0.99212 0.93295 1.19064 0.96233 0.95289 0.90930 1.21224 1.28625 1.14302 0.91417 0.92773 1.25022 0.95288 0.95059 0.99107 1.69957 1.36392 1.22925 1.24421 0.86671 0.79595 0.79230 0.82585 1.20295 1.21340 1.20236 1.21144 0.96689 0.93465 0.88721 0.94335 1.21870 1.02057 0.95050 1.01287 1.22285 1.00191 1.02460 0.90436 1.23026 0.97742 0.96686 1.04687 1.22924 1.03566 0.97768 0.97400 0.92666 0.93027 0.91950 0.90314 0.91182 0.95046 0.90974 0.92722 0.93553 0.96950 0.96695 0.93038 0.91724 0.92734 0.92083 0.87218 0.89152 0.89104 0.88994 0.88992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.54 9.17 37.16 0.34 -2.20 16 2 C 0.05 0.70 5.54 -3.82 -0.02 0.68 16 3 N -0.53 -8.08 4.58 -226.64 -1.04 -9.12 16 4 C 0.05 0.86 4.50 -3.82 -0.02 0.84 16 5 C -0.10 -2.20 5.03 -26.73 -0.13 -2.34 16 6 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 7 C -0.52 -14.97 9.11 -34.44 -0.31 -15.28 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 10 N -0.90 -27.40 13.29 55.43 0.74 -26.67 16 11 Si 0.89 22.01 29.54 -169.99 -5.02 16.99 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 C 0.11 1.40 1.91 -67.71 -0.13 1.27 16 16 H 0.04 0.52 6.24 -51.93 -0.32 0.20 16 17 C -0.15 -1.81 8.83 37.16 0.33 -1.49 16 18 C -0.14 -1.50 3.72 -90.63 -0.34 -1.84 16 19 C -0.18 -1.78 10.05 -26.74 -0.27 -2.05 16 20 C -0.18 -1.67 9.73 -26.74 -0.26 -1.93 16 21 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 22 H 0.05 0.65 5.91 -51.93 -0.31 0.35 16 23 H 0.06 0.95 6.65 -51.93 -0.35 0.60 16 24 H 0.08 1.21 6.51 -51.93 -0.34 0.87 16 25 H 0.07 0.88 6.65 -51.93 -0.35 0.54 16 26 H 0.03 0.57 6.16 -51.93 -0.32 0.25 16 27 H 0.07 1.30 5.85 -51.93 -0.30 0.99 16 28 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.05 0.98 6.61 -51.93 -0.34 0.63 16 30 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.05 0.58 7.29 -51.93 -0.38 0.20 16 35 H 0.06 0.82 6.21 -51.93 -0.32 0.50 16 36 H 0.11 1.29 8.09 -51.93 -0.42 0.87 16 37 H 0.09 0.89 7.66 -51.93 -0.40 0.49 16 38 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.09 0.83 7.61 -51.93 -0.40 0.44 16 LS Contribution 307.22 15.07 4.63 4.63 Total: -1.00 -29.73 307.22 -8.78 -38.51 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -7.04 Total: -2.01 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: -1.05 Total: -22.33 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: -0.30 Total: -35.79 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -29.73 -8.78 -38.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000324778615.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.655 kcal (2) G-P(sol) polarization free energy of solvation -29.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds