Wall clock time and date at job start Mon Mar 30 2020 03:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46907 * 109.47243 * 2 1 4 4 C 1.46898 * 111.00054 * 300.71597 * 3 2 1 5 5 C 1.53003 * 109.47040 * 294.59620 * 4 3 2 6 6 C 1.53004 * 109.47197 * 181.29678 * 5 4 3 7 7 C 1.50702 * 109.47166 * 180.02562 * 6 5 4 8 8 H 1.07994 * 120.00086 * 0.02562 * 7 6 5 9 9 C 1.37876 * 119.99652 * 180.02562 * 7 6 5 10 10 N 1.31517 * 120.00331 * 0.02562 * 9 7 6 11 11 Si 1.86804 * 119.99816 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.46671 * 60.00279 * 11 9 7 13 13 H 1.48499 * 109.46942 * 180.02562 * 11 9 7 14 14 H 1.48500 * 109.46969 * 300.00392 * 11 9 7 15 15 C 1.46901 * 110.99713 * 64.66875 * 3 2 1 16 16 H 1.08996 * 109.46907 * 296.04636 * 15 3 2 17 17 C 1.53000 * 109.46556 * 176.04409 * 15 3 2 18 18 C 1.53000 * 109.46945 * 56.04666 * 15 3 2 19 19 C 1.52993 * 117.49973 * 248.61870 * 18 15 3 20 20 C 1.52996 * 60.00065 * 252.51198 * 19 18 15 21 21 H 1.08997 * 109.46988 * 186.63605 * 1 2 3 22 22 H 1.09005 * 109.47008 * 306.63623 * 1 2 3 23 23 H 1.09002 * 109.47303 * 66.62958 * 1 2 3 24 24 H 1.09003 * 109.47276 * 240.00544 * 2 1 3 25 25 H 1.09002 * 109.47587 * 120.00509 * 2 1 3 26 26 H 1.09004 * 109.47104 * 54.59728 * 4 3 2 27 27 H 1.08994 * 109.47103 * 174.60223 * 4 3 2 28 28 H 1.08998 * 109.47506 * 301.30233 * 5 4 3 29 29 H 1.09007 * 109.47204 * 61.30085 * 5 4 3 30 30 H 1.09001 * 109.46890 * 300.00422 * 6 5 4 31 31 H 1.08999 * 109.46464 * 59.99954 * 6 5 4 32 32 H 0.96995 * 120.00235 * 179.97438 * 10 9 7 33 33 H 1.08996 * 109.47698 * 299.99743 * 17 15 3 34 34 H 1.09003 * 109.46559 * 180.02562 * 17 15 3 35 35 H 1.08992 * 109.47109 * 60.00818 * 17 15 3 36 36 H 1.09001 * 115.55110 * 34.32746 * 18 15 3 37 37 H 1.09003 * 117.49933 * 0.02562 * 19 18 15 38 38 H 1.09006 * 117.50264 * 145.01943 * 19 18 15 39 39 H 1.08998 * 117.49935 * 252.50615 * 20 19 18 40 40 H 1.09003 * 117.49743 * 107.49328 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5348 2.1149 -1.1790 5 6 2.1391 1.5005 -2.4433 6 6 1.6596 2.2809 -3.6689 7 6 2.2543 1.6754 -4.9142 8 1 2.9084 0.8194 -4.8391 9 6 1.9632 2.2143 -6.1494 10 7 1.1670 3.2571 -6.2409 11 14 2.7009 1.4642 -7.6930 12 1 2.2707 0.0477 -7.8092 13 1 2.2364 2.2223 -8.8824 14 1 4.1825 1.5268 -7.6143 15 6 1.6419 2.0769 1.2396 16 1 0.5561 2.1521 1.2973 17 6 2.2515 3.4802 1.2463 18 6 2.1633 1.2886 2.4428 19 6 1.1303 0.6055 3.3411 20 6 1.8704 1.8498 3.8357 21 1 -0.3633 -1.0208 0.1188 22 1 -0.3633 0.6133 0.8247 23 1 -0.3634 0.4077 -0.9434 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 0.4478 2.0478 -1.2262 27 1 1.8314 3.1611 -1.1060 28 1 3.2265 1.5467 -2.3857 29 1 1.8236 0.4606 -2.5285 30 1 0.5720 2.2346 -3.7264 31 1 1.9750 3.3207 -3.5837 32 1 0.9625 3.6364 -7.1099 33 1 3.3374 3.4051 1.1887 34 1 1.9716 3.9934 2.1663 35 1 1.8801 4.0418 0.3892 36 1 3.1164 0.7808 2.2950 37 1 0.0792 0.7173 3.0747 38 1 1.4035 -0.3521 3.7844 39 1 2.6306 1.7110 4.6043 40 1 1.3063 2.7806 3.8949 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000324778615.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:20 Heat of formation + Delta-G solvation = -7.719287 kcal Electronic energy + Delta-G solvation = -15991.707191 eV Core-core repulsion = 13612.947824 eV Total energy + Delta-G solvation = -2378.759367 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 225.179 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.33833 -37.48642 -35.59609 -33.33900 -32.60718 -29.71580 -27.99988 -25.55081 -24.40260 -23.12794 -23.03853 -21.19473 -20.00913 -18.43634 -17.55125 -16.61749 -16.24688 -16.12414 -15.76651 -15.06135 -14.50544 -14.39366 -13.93777 -13.79727 -13.53021 -13.25285 -13.03282 -12.78769 -12.69464 -12.51128 -12.42895 -12.20335 -12.11987 -11.83077 -11.72214 -11.41258 -11.26514 -11.13758 -10.92928 -10.73779 -10.53774 -9.13607 -8.19388 -6.30556 1.39822 1.43329 1.51235 2.41373 2.85089 3.08900 3.13458 3.76899 4.04895 4.06238 4.16344 4.24730 4.34725 4.38512 4.41255 4.50166 4.60440 4.65128 4.74675 4.77518 4.85765 4.91119 5.01009 5.03116 5.07971 5.16754 5.18513 5.23815 5.30777 5.33109 5.37121 5.45764 5.54438 5.75785 5.86700 6.17947 6.29464 6.34089 6.85882 7.38543 8.92412 Molecular weight = 225.18amu Principal moments of inertia in cm(-1) A = 0.052143 B = 0.004960 C = 0.004781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.855655 B = 5644.054711 C = 5854.964259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.050 3.950 3 N -0.535 5.535 4 C 0.061 3.939 5 C -0.087 4.087 6 C 0.027 3.973 7 C -0.543 4.543 8 H 0.058 0.942 9 C 0.000 4.000 10 N -0.934 5.934 11 Si 0.965 3.035 12 H -0.267 1.267 13 H -0.282 1.282 14 H -0.267 1.267 15 C 0.109 3.891 16 H 0.036 0.964 17 C -0.144 4.144 18 C -0.148 4.148 19 C -0.178 4.178 20 C -0.167 4.167 21 H 0.072 0.928 22 H 0.059 0.941 23 H 0.037 0.963 24 H 0.063 0.937 25 H 0.090 0.910 26 H 0.026 0.974 27 H 0.068 0.932 28 H 0.049 0.951 29 H 0.048 0.952 30 H -0.012 1.012 31 H -0.010 1.010 32 H 0.264 0.736 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.045 0.955 36 H 0.104 0.896 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.161 -4.601 19.047 19.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.078 4.078 3 N -0.259 5.259 4 C -0.066 4.066 5 C -0.125 4.125 6 C -0.010 4.010 7 C -0.581 4.581 8 H 0.076 0.924 9 C -0.198 4.198 10 N -0.574 5.574 11 Si 0.789 3.211 12 H -0.192 1.192 13 H -0.207 1.207 14 H -0.192 1.192 15 C 0.001 3.999 16 H 0.054 0.946 17 C -0.201 4.201 18 C -0.167 4.167 19 C -0.215 4.215 20 C -0.204 4.204 21 H 0.091 0.909 22 H 0.078 0.922 23 H 0.056 0.944 24 H 0.081 0.919 25 H 0.108 0.892 26 H 0.044 0.956 27 H 0.086 0.914 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.006 0.994 31 H 0.009 0.991 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.064 0.936 36 H 0.122 0.878 37 H 0.107 0.893 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.603 -4.491 18.912 19.447 hybrid contribution -0.783 -0.002 -1.179 1.415 sum -0.179 -4.493 17.733 18.295 Atomic orbital electron populations 1.22330 0.98124 1.02738 1.01042 1.22164 0.93150 0.89871 1.02620 1.62280 1.59574 1.02600 1.01460 1.22093 0.96675 0.98007 0.89871 1.21362 0.99527 0.98648 0.92946 1.18954 0.94570 0.94562 0.92930 1.21654 1.29036 1.14719 0.92697 0.92373 1.25985 0.95544 0.95396 1.02854 1.70093 1.37560 1.24267 1.25503 0.85502 0.79020 0.78637 0.77908 1.19155 1.20698 1.19172 1.21189 0.96613 0.93766 0.88291 0.94606 1.21867 1.01585 0.94957 1.01714 1.22125 1.00488 1.03625 0.90452 1.23083 0.97266 0.97474 1.03667 1.23009 1.03487 0.97841 0.96109 0.90895 0.92205 0.94405 0.91864 0.89150 0.95565 0.91358 0.93229 0.93360 0.99352 0.99125 0.92768 0.92261 0.90597 0.93624 0.87774 0.89268 0.87903 0.87628 0.88584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.70 9.17 71.98 0.66 -4.04 16 2 C 0.05 1.35 5.54 86.30 0.48 1.83 16 3 N -0.54 -16.07 4.58 -870.97 -3.99 -20.06 16 4 C 0.06 2.23 4.50 86.30 0.39 2.62 16 5 C -0.09 -3.80 5.03 30.60 0.15 -3.64 16 6 C 0.03 1.51 4.97 29.85 0.15 1.66 16 7 C -0.54 -31.96 9.11 25.60 0.23 -31.73 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 9 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 10 N -0.93 -58.04 13.29 21.45 0.28 -57.76 16 11 Si 0.97 45.14 29.54 68.60 2.03 47.17 16 12 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 13 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 14 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 15 C 0.11 2.70 1.91 44.92 0.09 2.79 16 16 H 0.04 0.92 6.24 -2.39 -0.01 0.90 16 17 C -0.14 -3.47 8.83 71.98 0.64 -2.83 16 18 C -0.15 -2.96 3.72 -10.80 -0.04 -3.00 16 19 C -0.18 -2.93 10.05 30.59 0.31 -2.62 16 20 C -0.17 -2.62 9.73 30.59 0.30 -2.33 16 21 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 22 H 0.06 1.42 5.91 -2.38 -0.01 1.41 16 23 H 0.04 1.14 6.65 -2.39 -0.02 1.13 16 24 H 0.06 1.91 6.51 -2.39 -0.02 1.89 16 25 H 0.09 2.10 6.65 -2.39 -0.02 2.08 16 26 H 0.03 0.98 6.16 -2.39 -0.01 0.97 16 27 H 0.07 2.53 5.85 -2.39 -0.01 2.52 16 28 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.05 2.07 6.61 -2.38 -0.02 2.05 16 30 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 31 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 32 H 0.26 15.37 8.31 -92.71 -0.77 14.59 16 33 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.08 1.48 7.29 -2.39 -0.02 1.46 16 35 H 0.04 1.22 6.21 -2.39 -0.01 1.21 16 36 H 0.10 2.24 8.09 -2.39 -0.02 2.22 16 37 H 0.09 1.51 7.66 -2.39 -0.02 1.49 16 38 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 39 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.10 1.45 7.61 -2.39 -0.02 1.43 16 Total: -1.00 -63.92 307.22 3.11 -60.81 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: 0.98 Total: 10.70 kcal Atomic # 6 Polarization: -44.67 SS G_CDS: 3.81 Total: -40.86 kcal Atomic # 7 Polarization: -74.11 SS G_CDS: -3.71 Total: -77.82 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -63.92 3.11 -60.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000324778615.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.089 kcal (2) G-P(sol) polarization free energy of solvation -63.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds